[annotation] annotation of ion channel subunits
Doug howe
dhowe at cs.uoregon.edu
Fri Oct 5 13:30:09 PDT 2007
For the Ref. Genomes we are annotating the gene p2rx3, a subunit of an
ATP activated cation channel.
A paper I have shows that adding this gene to hek293 cells results in
the generation of an inward current in the presence of ATP.
We know (not from this paper) that p2x receptors are a complex of
subunits. Should this be annotated as 'contributes_to' ATP-gated cation
channel activity by IDA because it is thought to be part of an ion
channel complex, or is it not 'contributes_to' because you get the
current by introduction of just the single gene product (even if it is
forming a homomeric channel complex)??
Introduction of both zebrafish p2rx3 and rat p2rx5 produces a channel
with novel properties....what can be done with that?
'protein heterooligomerization' with the rat p2rx5 by IGI?
-Doug
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