[Annotation] evidence code advice

Tanya Berardini tberardi at acoma.stanford.edu
Wed Apr 2 21:21:12 PDT 2008


Hi Mike,

I am interested to learn how


<snip>

> TAIR (23,486 - 22%),

<snip>

> use RCA -- thats the number of RCA and
> the percent of total associations provided by the project.
>

Most of the TAIR RCA annotations come from the Arabidopsis thaliana
annotations that we integrated from TIGR.  They had a large fraction of
annotations that used the evidence code ISS.  However, after the RCA
evidence code was adopted, and we discussed it with Linda Hannick, we
thought that the RCA evidence code would be more appropriate than ISS and so
we moved all annotations with this type of analysis from ISS to RCA.  A
description of their assignment method is here:

http://arabidopsis.org/servlets/TairObject?type=communication&id=501714663

There are probably a handful of TAIR curated RCA annotations that derive
from papers.

Tanya

<http://www.arabidopsis.org>
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