[Annotation] Usage of the With/From Column for IEA ?

[Pankaj Jaiswal]

http://www.geneontology.org/GO.evidence.shtml#iea

Ref: From the above site

Usage of the With/From Column for IEA

At the January 2007 GOC meeting, it was agreed that it will be required 
to make an entry in the with/from column for all annotations made after 
May 1, 2007 when using this evidence code to indicate what individual 
sequences, sequence objects, methods, keyword mapping files, etc. are 
the basis of the annotation. When multiple entries are placed in the 
with/from field, they are separated by pipes.

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Based on this rule, would you please suggest, what would be the value 
for the 'WITH' column.

- if we are making a TMHMM prediction for a 'putative tansmembrane' 
annotation
- if we have used TargetP/SignalP/Predotar/Psort to predict a putative 
cellular localization

None of the above prediction softwares give appropriate value to be 
filled in the 'WITH' column.

If you agree our suggestion is to relax this rule for IEA's.

Pankaj