[Annotation] replacing UniProt refs with UniProtKB

Jane Lomax jane at ebi.ac.uk
Wed Jul 2 03:04:04 PDT 2008


Hi - there are still references in the database to UniProt, these should 
all instead be UniProtKB. The old UniProt references are causing some 
problems with AmiGO, so it would be really helpful if all the groups 
could replace them with UniProtKB in their own files. Mike has generated 
a list of the numbers of refs in each of the association files:

gene_association.GeneDB_Lmajor.gz        14
gene_association.GeneDB_Pfalciparum.gz  720
gene_association.GeneDB_Spombe.gz      2407
gene_association.GeneDB_Tbrucei.gz      805
gene_association.PAMGO_Mgrisea.gz        11
gene_association.dictyBase.gz          1301
gene_association.fb.gz                 4529
gene_association.goa_chicken.gz         739
gene_association.goa_cow.gz            1314
gene_association.goa_human.gz          3795
gene_association.goa_uniprot.gz           3
gene_association.gramene_oryza.gz        46
gene_association.mgi.gz               10401
gene_association.rgd.gz                  52
gene_association.sgd.gz                  62
gene_association.tair.gz                  4
gene_association.wb.gz                  338
gene_association.zfin.gz                371

Apparently most of them are in ISS associations, in the WITH field.

thanks,

Jane



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