[Annotation] Association errors

[Amelia Ireland]

Hi all,

I have been looking at database refs in the GO database and have found a
few dodgy xrefs which need fixing. The errors mean that the links from the
associations don't work correctly, so it'd be good to get them fixed.

I've attached a file with the dodgy refs in it. It's tab delimited so you
can open it in excel for your viewing pleasure (or displeasure).

Cheers!
Amelia

-- 
Amelia Ireland
GO Editorial Office
http://www.ebi.ac.uk || http://www.berkeleybop.org
Carbon neutral driving: http://www.targetneutral.com/TONIC/index.jsp

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gpxref	evcode	reference	with column	assigned_by

REFERENCE				
Not sure what TIGR:autoGO is supposed to mean!				
GeneDB_Tbrucei:Tb10.6k15.3030	ISS	TIGR:autoGO	UniProt:Q9Y4W6	GeneDB_Tbrucei

WITH COLUMN				
"Should be Interpro, not IUPHAR"				
dictyBase:DDB0266650	ISS	dictyBase_REF:10155	IUPHAR:IPR000271	dictyBase

Should these be MGI?				
GeneDB_Spombe:SPBC28E12.06c	ISS	PMID:17072883	MGD:1096875	GeneDB_Spombe
SGD:S000005096	ISS	SGD_REF:S000125856	MGD:99665	SGD
SGD:S000003563	ISS	SGD_REF:S000045069	MGD:98181	SGD
SGD:S000003241	ISS	SGD_REF:S000043550	MGD:74623	SGD

Remove the surplus MGD				
dictyBase:DDB0230136	ISS	dictyBase_REF:10155	MGD:MGI:1914510	dictyBase

The MGI IDs for these need to be found				
SGD:S000005853	ISS	SGD_REF:S000043587	MGD:Myo5a	SGD
SGD:S000000027	ISS	SGD_REF:S000043587	MGD:Myo5a	SGD
SGD:S000003664	ISS	SGD_REF:S000046190	MGD:Map2k1	SGD

Should be lowercase				
MGI:MGI:1915651	ISS	MGI:MGI:3576961	REFSEQ:NM_138387.2	MGI

"I think these are supposed to be SGD, not SMD"				
dictyBase:DDB0230088	ISS	dictyBase_REF:10155	SMD:S000005654	dictyBase
dictyBase:DDB0231094	ISS	dictyBase_REF:10155	SMD:S000003080	dictyBase

TIGR: should these be TIGRFAMS refs instead?				
TAIR:gene:2050224	RCA	TAIR:Communication:501714663	TIGR:TIGR00797	TIGR
TAIR:gene:2050224	RCA	TAIR:Communication:501714663	TIGR:TIGR00797	TIGR
TIGR_CMR:BA_0175	ISS	PMID:12721629	TIGR:TIGR00363	TIGR
TIGR_CMR:BA_1378	ISS	PMID:12721629	TIGR:TIGR01439	TIGR
TIGR_CMR:BA_1378	ISS	PMID:12721629	TIGR:TIGR01439	TIGR
TIGR_CMR:BA_2818	ISS	PMID:12721629	TIGR:TIGR01389	TIGR
TIGR_CMR:BA_2818	ISS	PMID:12721629	TIGR:TIGR01389	TIGR
TIGR_CMR:BA_2818	ISS	PMID:12721629	TIGR:TIGR01389	TIGR
TIGR_CMR:BA_2818	ISS	PMID:12721629	TIGR:TIGR01389	TIGR
TIGR_CMR:BA_2818	ISS	PMID:12721629	TIGR:TIGR01389	TIGR
TIGR_CMR:BA_3635	ISS	PMID:12721629	TIGR:annotation	TIGR
TIGR_CMR:BA_3769	ISS	PMID:12721629	TIGR:TIGR01439	TIGR
TIGR_CMR:BA_3769	ISS	PMID:12721629	TIGR:TIGR01439	TIGR
TIGR_CMR:BA_4076	ISS	PMID:12721629	TIGR:TIGR01439	TIGR
TIGR_CMR:BA_4076	ISS	PMID:12721629	TIGR:TIGR01439	TIGR
TIGR_CMR:BA_4140	ISS	PMID:12721629	TIGR:TIGR00095	TIGR
TIGR_CMR:BA_4140	ISS	PMID:12721629	TIGR:TIGR00095	TIGR
TIGR_CMR:BA_4713	ISS	PMID:12721629	TIGR:TIGR00040	TIGR
TIGR_CMR:BA_4713	ISS	PMID:12721629	TIGR:TIGR00040	TIGR
TIGR_CMR:LMOf2365_1146	ISS	PMID:15115801	TIGR:TIGR00493	TIGR
TIGR_CMR:LMOf2365_1146	ISS	PMID:15115801	TIGR:TIGR00493	TIGR
TIGR_CMR:LMOf2365_1146	ISS	PMID:15115801	TIGR:TIGR00493	TIGR
TIGR_CMR:LMOf2365_1733	ISS	PMID:15115801	TIGR:TIGR00500	TIGR
TIGR_CMR:LMOf2365_1733	ISS	PMID:15115801	TIGR:TIGR00500	TIGR
TIGR_CMR:LMOf2365_1888	ISS	PMID:15115801	TIGR:TIGR00401	TIGR
TIGR_CMR:LMOf2365_1888	ISS	PMID:15115801	TIGR:TIGR00401	TIGR
TIGR_CMR:LMOf2365_2483	ISS	PMID:15115801	TIGR:TIGR00963	TIGR
TIGR_CMR:LMOf2365_2483	ISS	PMID:15115801	TIGR:TIGR00963	TIGR

Change Flybase to FB:...				
GeneDB_Spombe:SPCC550.14	ISS	PMID:17072883	Flybase:FBgn0027835	GeneDB_Spombe
GeneDB_Spombe:SPAC26F1.02	ISS	PMID:17072883	Flybase:FBgn0037737	GeneDB_Spombe

These IDs are wrong - should be FB:FBgn0015477				
WB:WB:WP:CE30344	ISS	WB:WBPaper00004810	FLYBASE:CG8014-PA	WB
WB:WB:WP:CE30345	ISS	WB:WBPaper00004810	FLYBASE:CG8014-PA	WB