[Annotation] Association errors

[Midori Harris]

Mike's script won't flag these because they all use prefixes that are 
valid, but wrong for the specific ID. For example, IUPHAR is an allowed 
prefix, but it's not the correct prefix for an InterPro ID. The script 
only catches prefixes that aren't in the GO.xrf_abbs file at all; it can't 
check whether someone meant InterPro but typed IUPHAR.

m

On Thu, 12 Jun 2008, Valerie Wood wrote:

> pombe fixed
>
> Doesnt Mikes script check the format of the dbxrefs and check they have valid 
> prefixes? I though it did. If not can it be added so we capture most of these 
> at submission?
>
> Val
>
>
> Amelia Ireland wrote:
>> Hi all,
>> 
>> I have been looking at database refs in the GO database and have found a
>> few dodgy xrefs which need fixing. The errors mean that the links from the
>> associations don't work correctly, so it'd be good to get them fixed.
>> 
>> I've attached a file with the dodgy refs in it. It's tab delimited so you
>> can open it in excel for your viewing pleasure (or displeasure).
>> 
>> Cheers!
>> Amelia
>>