[Annotation] check for ND + additional annotation

Judith Blake jblake at informatics.jax.org
Wed Sep 3 11:37:13 PDT 2008


Typically, I think this should be done at the time of generating the 
annotation...even an IEA.  Each group might consider implementing 
something to QC this, but a QC at the time of submission of data file to 
AmiGO would be good too.

Judy



Midori Harris wrote:
> Hi,
>
> We received a query on the GO Help list from a user who noticed a gene 
> that was annotated to both the biological process (BP) root with ND, 
> and annotated to a non-root BP term with another evidence code. I 
> agreed with him that it doesn't make sense to keep the ND/root 
> annotation if a "real"
> annotation could be made to a term in the same ontology. Would it be 
> worthwhile to add a check for cases like this, perhaps in Mike's script?
>
> cheers,
> midori
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