[Annotation] map gene to GO

[Rama Balakrishnan]

HI

If you can get the sequence of your genes, then you can BLAST them  
within AmiGO and tranfer/map the GO annotations based on the best hits.
URL for AmiGO Blast-
http://amigo.geneontology.org/cgi-bin/amigo/blast.cgi?session_id=2694amigo1240334215

Hope this helps. Please let us know if you have questions.

Best,

Rama


On Apr 20, 2009, at 2:17 PM, Mike wrote:

>
> I wonder if someone can share their experience in mapping genes to  
> GO. The information I have for the genes are their symbol name like  
> ANAPC4 and the accession number like NM_013367.2. I have a bunch of  
> genes (more than 2000) like this. Any suggestions are appreciated.
>
> Thanks,
>
> Mike
>
>
>
>
> _______________________________________________
> Annotation mailing list
> Annotation at geneontology.org
> http://fafner.stanford.edu/mailman/listinfo/annotation

+-----o--o  
---------------------------------------------------------------
         o-o       Rama Balakrishnan Ph.D
         O          Senior Scientific Curator
       o-o         Saccharomyces Genome Database
      o---o       Stanford University
    o----o        Stanford, CA 94305-5120
  O-----O       Ph: 650.725.8956 Fax: 650.723.7016
    0--o          email: rama at genome.stanford.edu
      O            Website: http://www.yeastgenome.org
     o-o           SGD Wiki- http://wiki.yeastgenome.org
+- o---o  
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