[Annotation] mapping genes to GO slims

[Doug Howe]

Perhaps the most repeated question on the lists:
Does anyone have a bead on the current best way to map a list of genes  
(symbols or MOD IDs) to a GO slim, with the ability to include and  
exclude IEA annotations?

AmiGO has some of this, but it isn't clear to me how/if I could  
provide the ZFIN GAF file along with a list of target genes of  
interest so the IEAs would be included in the analysis?

Any recommendations?

-Doug

Doug Howe, Ph.D.
Scientific Curator
Zebrafish Nomenclature Coordinator
Zebrafish Information Network
541-346-0120
dhowe at zfin.org