From camon at ebi.ac.uk  Tue Jan 23 03:49:44 2007
From: camon at ebi.ac.uk (Evelyn Camon)
Date: Tue, 23 Jan 2007 11:49:44 +0000
Subject: GOA chicken and Cow files now updated
Message-ID: <45B5F658.1070408@ebi.ac.uk>

Evelyn

GOA releases: January 2007
===========================

GOA (GO Annotation at EBI) is a project run by the European Bioinformatics
Institute that aims to provide assignments of gene products to the Gene
Ontology (GO) resource.

The data can be obtained via:

            EBI FTP: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/

            EBI SRS: http://srs.ebi.ac.uk. Search GOA data library

            GO FTP: ftp://ftp.geneontology.org/pub/go/gene-associations/

            GO CVS: http://www.geneontology.org/GO.CVS.help.html

For further information read: http://www.ebi.ac.uk/GOA
or contact goa at ebi.ac.uk.

GOA News update:
*****************

Please note that the version of the GOA UniProt gene association file
available from the GO Consortium ftp site (ftp.geneontology.org)  has
been filtered to remove annotations for those species where a different
Consortium group is primarily responsible for providing GO annotations.
If you would like to download an unfiltered GOA UniProt gene association
file, please use either the GOA ftp site:

ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz


Or the submissions folder in the GO Consortium ftp site:

ftp://ftp.geneontology.org/pub/go/gene-associations/submission/gene_association.goa_uniprot.gz



Please look at our README
(ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/README) for further
information on the contents of the GOA gene association files.

Species which have been filtered out of the
gene_association.goa_uniprot.gz file on the GO Consortium site include:


Danio rerio
Drosophila melanogaster
Mus musculus
Rattus norvegicus

Arabidopsis thaliana
All rice species

Bacillus anthracis str. Ames
Campylobacter jejuni RM1221
Candida albicans
Caenorhabditis elegans
Coxiella burnetii RSA 493
Dehalococcoides ethenogenes 195
Dictyostelium sp., Dictyostelium discoideum
Geobacter sulfurreducens PCA
Glossina morsitans morsitans
Leishmania major
Listeria monocytogenes str. 4b F2365
Methylococcus capsulatus str. Bath
Pseudomonas syringae pv. tomato str. DC3000
Plasmodium falciparum
Saccharomyces cerevisiae
Schizosaccharomyces pombe
Shewanella oneidensis MR-1
Silicibacter pomeroyi DSS-3
Trypanosoma brucei
Vibrio cholerae O1 biovar eltor

(Further information on this filtering script can be found at:
http://www.geneontology.org/GO.annotation.shtml#file).


Regards

The UniProt GOA Team

-- 
Evelyn Camon
GOA Coordinator
Senior Scientific Curator
European Bioinformatics Institute
Tel:01223-494465
Fax:01223-494468
E-mail: camon at ebi.ac.uk
URL: http://www.ebi.ac.uk/goa