From gocvs at genome.Stanford.EDU  Tue Apr  3 21:31:07 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Tue, 3 Apr 2007 21:31:07 -0700 (PDT)
Subject: GO update 04/03/2007
Message-ID: <200704040431.VAA25083@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.261 by 5.265

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created new object GO:0060091 (macro)
  * Created object GO:0060091 of type obo:TERM.
  * Changed name of GO:0060091 from "<new term>" to "kinocilium"
  * Added definition "An immotile primary cilium that is found at the apical surface of auditory receptor cells. The kinocilium is surrounded by actin-based stereocilia."
  * Added definition dbxref GOC:dph to GO:0060091
  * Added definition dbxref PMID:15882574 to GO:0060091
  * Copied kinocilium (GO:0060091) (as part_of), to stereocilium bundle (GO:0032421)
  * Copied kinocilium (GO:0060091) (as OBO_REL:is_a), to nonmotile primary cilium (GO:0031513)
  * Changed namespace of GO:0060091 from "null" to "cellular_component"
* Created new object GO:0060092 (macro)
  * Created object GO:0060092 of type obo:TERM.
  * Changed name of GO:0060092 from "<new term>" to "regulation of synaptic transmission, glycinergic"
  * Added definition "Any process that stops or decreases the frequency, rate or extent of glycinergic synaptic transmission. Glycinergic synaptic transmission is the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glycine."
  * Added definition dbxref GOC:dms to GO:0060092
  * Added definition dbxref GOC:dph to GO:0060092
  * Copied regulation of synaptic transmission, glycinergic (GO:0060092) (as part_of), to synaptic transmission, glycinergic (GO:0060012)
  * Copied regulation of synaptic transmission, glycinergic (GO:0060092) (as OBO_REL:is_a), to regulation of synaptic transmission (GO:0050804)
  * Changed namespace of GO:0060092 from "null" to "biological_process"
* Created new object GO:0060093 (macro)
  * Created object GO:0060093 of type obo:TERM.
  * Changed name of GO:0060093 from "<new term>" to "negative regulation of synaptic transmission, glycinergic"
  * Added definition "Any process that stops or decreases the frequency, rate or extent of glycinergic synaptic transmission. Glycinergic synaptic transmission is the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glycine."
  * Added definition dbxref GOC:dms to GO:0060093
  * Added definition dbxref GOC:dph to GO:0060093
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 89e3be
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at c6fe68
  * Copied negative regulation of synaptic transmission, glycinergic (GO:0060093) (as OBO_REL:is_a), to regulation of synaptic transmission, glycinergic (GO:0060092)
  * Copied negative regulation of synaptic transmission, glycinergic (GO:0060093) (as OBO_REL:is_a), to negative regulation of synaptic transmission (GO:0050805)
  * Changed namespace of GO:0060093 from "null" to "biological_process"
* Created new object GO:0060094 (macro)
  * Created object GO:0060094 of type obo:TERM.
  * Changed name of GO:0060094 from "<new term>" to "positive regulation of synaptic transmission, glycinergic"
  * Added definition "Any process that activates or increases the frequency, rate or extent of glycinergic synaptic transmission. Glycinergic synaptic transmission is the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glycine."
  * Added definition dbxref GOC:dms to GO:0060094
  * Added definition dbxref GOC:dph to GO:0060094
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 688f7b
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at a3e8f6
  * Copied positive regulation of synaptic transmission, glycinergic (GO:0060094) (as OBO_REL:is_a), to regulation of synaptic transmission, glycinergic (GO:0060092)
  * Copied positive regulation of synaptic transmission, glycinergic (GO:0060094) (as OBO_REL:is_a), to positive regulation of synaptic transmission (GO:0050806)
  * Changed namespace of GO:0060094 from "null" to "biological_process"
* Created new object GO:0060095 (macro)
  * Created object GO:0060095 of type obo:TERM.
  * Changed name of GO:0060095 from "<new term>" to "zinc potentiation of synaptic transmission, glycinergic"
  * Added definition "Any process that activates or increases the frequency, rate or extent of glycinergic synaptic transmission in the presence of zinc. Glycinergic synaptic transmission is the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glycine."
  * Added definition dbxref GOC:dms to GO:0060095
  * Added definition dbxref GOC:dph to GO:0060095
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 113a425
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 7daaed
  * Copied zinc potentiation of synaptic transmission, glycinergic (GO:0060095) (as OBO_REL:is_a), to positive regulation of synaptic transmission, glycinergic (GO:0060094)
  * Changed namespace of GO:0060095 from "null" to "biological_process"
* Changed name of GO:0002459 from "adaptive immune response (sensu Myxinidae and Petromyzontidae)" to "adaptive immune response based on somatic recombination of immune receptors built from leucine-rich repeat domains"
* Changed definition from "An immune response based on directed amplification of specific receptors for antigen produced through a somatic diversification process, and allowing for enhanced response to subsequent exposures to the same antigen (immunological memory), as in, but not restricted to, hagfish and lamprays (Myxinidae, ncbi_taxonomy_id:7762, Petromyzontidae, ncbi_taxonomy_id:7746)." to "An immune response based on directed amplification of specific receptors for antigen produced through a somatic diversification process that includes somatic recombination of variable lymphocyte receptors (VLR) incorporating leucine-rich repeat (LRR) domains, and allowing for enhanced responses upon subsequent exposures to the same antigen (immunological memory)."
* Added definition dbxref GOC:mtg_sensu to GO:0002459
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 60d6e3
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1bc07a4
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 199df72
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 11cf1af
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 13f3da9
* Changed name of GO:0002460 from "adaptive immune response (sensu Gnathostomata)" to "adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains"
* Changed definition from "An immune response based on directed amplification of specific receptors for antigen produced through a somatic diversification process that includes somatic recombination of germline gene segments, and allowing for enhanced response to subsequent exposures to the same antigen (immunological memory), as in, but not restricted to, the jawed vertebrates (Gnathostomata, ncbi_taxonomy_id:7776)." to "An immune response based on directed amplification of specific receptors for antigen produced through a somatic diversification process that includes somatic recombination of germline gene segments encoding immunoglobulin superfamily domains, and allowing for enhanced responses upon subsequent exposures to the same antigen (immunological memory). Recombined receptors for antigen encoded by immunoglobulin superfamily domains include T cell receptors and immunoglobulins (antibodies)."
* Added definition dbxref GOC:mtg_sensu to GO:0002460
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at e92803
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 14210b7
* Changed name of GO:0002822 from "regulation of adaptive immune response (sensu Gnathostomata)" to "regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains."
* Changed definition from "Any process that modulates the frequency, rate, or extent of an adaptive immune response, as in, but not restricted to, the jawed vertebrates (Gnathostomata, ncbi_taxonomy_id:7776)." to "Any process that modulates the frequency, rate, or extent of an adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains."
* Added definition dbxref GOC:mtg_sensu to GO:0002822
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 57621a
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at e99a29
* Changed name of GO:0002823 from "negative regulation of adaptive immune response (sensu Gnathostomata)" to "negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains"
* Changed definition from "Any process that stops, prevents, or reduces the frequency, rate, or extent of an adaptive immune response , as in, but not restricted to, the jawed vertebrates (Gnathostomata, ncbi_taxonomy_id:7776)." to "Any process that stops, prevents, or reduces the frequency, rate, or extent of an adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains."
* Added definition dbxref GOC:mtg_sensu to GO:0002823
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 8815e9
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 5685b5
* Changed name of GO:0002824 from "positive regulation of adaptive immune response (sensu Gnathostomata)" to "positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains"
* Changed definition from "Any process that activates or increases the frequency, rate, or extent of an adaptive immune response, as in, but not restricted to, the jawed vertebrates (Gnathostomata, ncbi_taxonomy_id:7776)." to "Any process that activates or increases the frequency, rate, or extent of an adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains."
* Added definition dbxref GOC:mtg_sensu to GO:0002824
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 643881
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1b9bc20
* org.geneontology.oboedit.datamodel.history.DestroyObjectHistoryItem at ee05de
* org.geneontology.oboedit.datamodel.history.DestroyObjectHistoryItem at c3648f
* org.geneontology.oboedit.datamodel.history.DestroyObjectHistoryItem at 1ff2639
* Changed name of GO:0007516 from "hemocyte development (sensu Arthropoda)" to "hemocyte development"
* Changed definition from "The process whose specific outcome is the progression of the hemocyte over time, from its formation to the mature structure. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body). As in, but not restricted to, arthropods (Arthropoda, ncbi_taxonomy_id:6656)." to "The process whose specific outcome is the progression of the hemocyte over time, from its formation to the mature structure. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen."
* Added definition dbxref GOC:mtg_sensu to GO:0007516
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 269b79
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at a92710
* Changed definition from "Fix: The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant." to "The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant."
* added secondary id GO:0006960 to GO:0019730
* added secondary id GO:0019735 to GO:0019730
* Added definition dbxref GOC:mtg_sensu to GO:0019730
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1438ccd
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1d0fef8
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 138b49
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 11d91c5
* added secondary id GO:0006961 to GO:0019731
* added secondary id GO:0019733 to GO:0019731
* Added definition dbxref GOC:mtg_sensu to GO:0019731
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 4d2b72
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 5f4985
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1d3e0e8
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 152baf3
* added secondary id GO:0006966 to GO:0019732
* added secondary id GO:0019734 to GO:0019732
* Added definition dbxref GOC:mtg_sensu to GO:0019732
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 6fdd8a
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 39aaf1
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 5eab2
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 738593
* org.geneontology.oboedit.datamodel.history.DestroyObjectHistoryItem at 468062
* org.geneontology.oboedit.datamodel.history.DestroyObjectHistoryItem at 96b8a3
* org.geneontology.oboedit.datamodel.history.DestroyObjectHistoryItem at 133fa90
* Deleted stereocilium (GO:0032420) from cell projection (GO:0042995) with OBO_REL:is_a
* Copied stereocilium (GO:0032420) (as OBO_REL:is_a), to microvillus (GO:0005902)
* Changed name of GO:0035099 from "hemocyte migration (sensu Arthropoda)" to "hemocyte migration"
* Changed definition from "The directed movement of hemocytes within the embryo. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body). In Drosophila, embryonic hemocytes originate from the head mesoderm as a cluster of cells. The cluster splits into two and one group of cells crosses the amnioserosa. Both populations then spread toward the middle of the embryo and then disperse evenly throughout the embryo. As in, but not restricted to, arthropods (Arthropoda, ncbi_taxonomy_id:6656)." to "The directed movement of hemocytes within the embryo. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. In Drosophila, embryonic hemocytes originate from the head mesoderm as a cluster of cells. The cluster splits into two and one group of cells crosses the amnioserosa. Both populations then spread toward the middle of the embryo and then disperse evenly throughout the embryo."
* Added definition dbxref GOC:mtg_sensu to GO:0035099
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 18713f1
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 12e3a27
* Changed name of GO:0035163 from "embryonic hemocyte differentiation (sensu Arthropoda)" to "embryonic hemocyte differentiation"
* Changed definition from "The process whereby a relatively unspecialized cell derived from the embryonic head mesoderm acquires the specialized features of a mature hemocyte. As in, but not restricted to, arthropods (Arthropoda, ncbi_taxonomy_id:6656)." to "The process whereby a relatively unspecialized cell derived from the embryonic head mesoderm acquires the specialized features of a mature hemocyte. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen."
* Added definition dbxref GOC:mtg_sensu to GO:0035163
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1ebe66f
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 658ba0
* Changed name of GO:0035167 from "lymph gland hemopoiesis (sensu Arthropoda)" to "lymph gland hemopoiesis"
* Changed definition from "The production of blood cells from the larval lymph gland. Lymph glands in Drosophila are a hematopoietic organ composed of paired lobes located along the dorsal vessel. As in, but not restricted to, arthropods (Arthropoda, ncbi_taxonomy_id:6656)." to "The production of blood cells from the larval lymph gland. The lymph gland consists of three to six bilaterally paired lobes that are attached to the cardioblasts during larval stages, and it degenerates during pupal stages."
* Added definition dbxref GOC:mtg_sensu to GO:0035167
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at b1e8de
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 2f6b14
* Changed name of GO:0035168 from "lymph gland hemocyte differentiation (sensu Arthropoda)" to "lymph gland hemocyte differentiation"
* Changed definition from "The process whereby a relatively unspecialized cell derived from the larval lymph gland acquires the specialized features of a mature hemocyte. As in, but not restricted to, arthropods (Arthropoda, ncbi_taxonomy_id:6656)." to "The process whereby a relatively unspecialized cell derived from the larval lymph gland acquires the specialized features of a mature hemocyte. The lymph gland consists of three to six bilaterally paired lobes that are attached to the cardioblasts during larval stages, and it degenerates during pupal stages. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen."
* Added definition dbxref GOC:mtg_sensu to GO:0035168
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 11f1418
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1606ca6
* Changed name of GO:0035172 from "hemocyte proliferation (sensu Arthropoda)" to "hemocyte proliferation"
* Changed definition from "The multiplication or reproduction of hemocytes, resulting in the rapid expansion of the cell population. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body). As in, but not restricted to, arthropods (Arthropoda, ncbi_taxonomy_id:6656)." to "The multiplication or reproduction of hemocytes, resulting in the rapid expansion of the cell population. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen."
* Added definition dbxref GOC:mtg_sensu to GO:0035172
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 17d383c
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1f6ebe7
* Changed name of GO:0035206 from "regulation of hemocyte proliferation (sensu Arthropoda)" to "regulation of hemocyte proliferation"
* Changed definition from "Any process that modulates the frequency, rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body). As in, but not restricted to, arthropods (Arthropoda, ncbi_taxonomy_id:6656)." to "Any process that modulates the frequency, rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen."
* Added definition dbxref GOC:mtg_sensu to GO:0035206
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1f9ad8d
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at f10812
* Changed name of GO:0035207 from "negative regulation of hemocyte proliferation (sensu Arthropoda)" to "negative regulation of hemocyte proliferation"
* Changed definition from "Any process that stops, prevents or reduces the rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body). As in, but not restricted to, arthropods (Arthropoda, ncbi_taxonomy_id:6656)." to "Any process that stops, prevents or reduces the rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen."
* Added definition dbxref GOC:mtg_sensu to GO:0035207
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 48e288
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1108c69
* Changed name of GO:0035208 from "positive regulation of hemocyte proliferation (sensu Arthropoda)" to "positive regulation of hemocyte proliferation"
* Changed definition from "Any process that activates or increases the rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body). As in, but not restricted to, arthropods (Arthropoda, ncbi_taxonomy_id:6656)." to "Any process that activates or increases the rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen."
* Added definition dbxref GOC:mtg_sensu to GO:0035208
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1727f97
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 16a9d0
* Changed name of GO:0042386 from "hemocyte differentiation (sensu Arthropoda)" to "hemocyte differentiation"
* Changed definition from "The process whereby a relatively unspecialized cell acquires the characteristics of a mature hemocyte. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. As in, but not restricted to, arthropods (Arthropoda, ncbi_taxonomy_id:6656)." to "The process whereby a relatively unspecialized cell acquires the characteristics of a mature hemocyte. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen."
* Added definition dbxref GOC:mtg_sensu to GO:0042386
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1e6b374
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 10fb1c1
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 15f2cd0
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1773673
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 197beed
* Changed name of GO:0048542 from "lymph gland development (sensu Arthropoda)" to "lymph gland development"
* Changed definition from "The process whose specific outcome is the progression of the lymph gland over time, from its formation to the mature structure. The lymph gland is one of the sites of hemocyte differentiation. It consists of three to six bilaterally paired lobes that are attached to the cardioblasts during larval stages, and it degenerates during pupal stages. As in, but not restricted to, arthropods (Arthropoda, ncbi_taxonomy_id:6656)." to "The process whose specific outcome is the progression of the lymph gland over time, from its formation to the mature structure. The lymph gland is one of the sites of hemocyte differentiation. It consists of three to six bilaterally paired lobes that are attached to the cardioblasts during larval stages, and it degenerates during pupal stages."
* Added definition dbxref GOC:mtg_sensu to GO:0048542
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 177c093
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 10426f0
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1986364


From gocvs at genome.Stanford.EDU  Wed Apr  4 21:31:07 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Wed, 4 Apr 2007 21:31:07 -0700 (PDT)
Subject: GO update 04/04/2007
Message-ID: <200704050431.VAA08438@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.265 by 5.271

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created new object GO:0010380 (macro)
  * Created object GO:0010380 of type obo:TERM.
  * Changed name of GO:0010380 from "<new term>" to "regulation of chlorophyll biosynthetic process"
  * Added definition "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors."
  * Added definition dbxref PMID:17291312 to GO:0010380
  * Copied regulation of chlorophyll biosynthetic process (GO:0010380) (as part_of), to chlorophyll biosynthetic process (GO:0015995)
  * Copied regulation of chlorophyll biosynthetic process (GO:0010380) (as OBO_REL:is_a), to regulation of biological process (GO:0050789)
  * Changed namespace of GO:0010380 from "null" to "biological_process"
* Created new object GO:0010381 (macro)
  * Created object GO:0010381 of type obo:TERM.
  * Changed name of GO:0010381 from "<new term>" to "attachment of peroxisome to chloroplast"
  * Added definition "The process by which a peroxisome is transported to, and/or maintained in, a location adjacent to the chloroplast."
  * Added definition dbxref PMID:17215364 to GO:0010381
  * Copied attachment of peroxisome to chloroplast (GO:0010381) (as OBO_REL:is_a), to organelle localization (GO:0051640)
  * Changed namespace of GO:0010381 from "null" to "biological_process"
* Created new object GO:0033110 (macro)
  * Created object GO:0033110 of type obo:TERM.
  * Changed name of GO:0033110 from "<new term>" to "CVT vesicle membrane"
  * Copied CVT vesicle membrane (GO:0033110) (as part_of), to CVT vesicle (GO:0033107)
  * Copied CVT vesicle membrane (GO:0033110) (as OBO_REL:is_a), to cytoplasmic vesicle membrane (GO:0030659)
  * Changed namespace of GO:0033110 from "null" to "cellular_component"
* Created new object GO:0033111 (macro)
  * Created object GO:0033111 of type obo:TERM.
  * Changed name of GO:0033111 from "<new term>" to "attachment organelle membrane"
  * Added definition "The lipid bilayer surrounding an attachment organelle."
  * Added definition dbxref GOC:ecd to GO:0033111
  * Copied attachment organelle membrane (GO:0033111) (as part_of), to attachment organelle (GO:0033099)
  * Copied attachment organelle membrane (GO:0033111) (as OBO_REL:is_a), to organelle membrane (GO:0031090)
  * Changed namespace of GO:0033111 from "null" to "cellular_component"
* Created new object GO:0033112 (macro)
  * Created object GO:0033112 of type obo:TERM.
  * Changed name of GO:0033112 from "<new term>" to "cyanelle envelope"
  * Added definition "The double lipid bilayer enclosing the cyanelle and separating its contents from the rest of the cytoplasm; includes the intermembrane space."
  * Added definition dbxref GOC:mah to GO:0033112
  * Copied cyanelle envelope (GO:0033112) (as part_of), to cyanelle (GO:0009842)
  * Copied cyanelle envelope (GO:0033112) (as OBO_REL:is_a), to plastid envelope (GO:0009526)
  * Changed namespace of GO:0033112 from "null" to "cellular_component"
* Created new object GO:0033113 (macro)
  * Created object GO:0033113 of type obo:TERM.
  * Changed name of GO:0033113 from "<new term>" to "cyanelle membrane"
  * Added definition "Either of the lipid bilayers that surround a cyanelle and form the cyanelle envelope."
  * Added definition dbxref GOC:ecd to GO:0033113
  * Copied cyanelle membrane (GO:0033113) (as OBO_REL:is_a), to plastid membrane (GO:0042170)
  * Copied cyanelle membrane (GO:0033113) (as part_of), to cyanelle envelope (GO:0033112)
  * Changed namespace of GO:0033113 from "null" to "cellular_component"
* Created new object GO:0033114 (macro)
  * Created object GO:0033114 of type obo:TERM.
  * Changed name of GO:0033114 from "<new term>" to "cyanelle thylakoid lumen"
  * Added definition "The volume enclosed by a cyanelle thylakoid membrane."
  * Added definition dbxref GOC:mah to GO:0033114
  * Copied cyanelle thylakoid lumen (GO:0033114) (as part_of), to cyanelle thylakoid (GO:0009843)
  * Copied cyanelle thylakoid lumen (GO:0033114) (as OBO_REL:is_a), to plastid thylakoid lumen (GO:0031978)
  * Changed namespace of GO:0033114 from "null" to "cellular_component"
* Created new object GO:0033115 (macro)
  * Created object GO:0033115 of type obo:TERM.
  * Changed name of GO:0033115 from "<new term>" to "cyanelle thylakoid membrane"
  * Added definition "The lipid bilayer membrane of any thylakoid within a cyanelle."
  * Added definition dbxref GOC:mah to GO:0033115
  * Copied cyanelle thylakoid membrane (GO:0033115) (as OBO_REL:is_a), to plastid thylakoid membrane (GO:0055035)
  * Changed namespace of GO:0033115 from "null" to "cellular_component"
* Created new object GO:0033116 (macro)
  * Created object GO:0033116 of type obo:TERM.
  * Changed name of GO:0033116 from "<new term>" to "ER-Golgi intermediate compartment membrane"
  * Added definition "The lipid bilayer surrounding any of the compartments of the ER-Golgi intermediate compartment system."
  * Added definition dbxref GOC:mah to GO:0033116
  * Added definition dbxref PMID:16723730 to GO:0033116
  * Copied ER-Golgi intermediate compartment membrane (GO:0033116) (as part_of), to ER-Golgi intermediate compartment (GO:0005793)
  * Copied ER-Golgi intermediate compartment membrane (GO:0033116) (as OBO_REL:is_a), to organelle membrane (GO:0031090)
  * Changed namespace of GO:0033116 from "null" to "cellular_component"
* Created new object GO:0033117 (macro)
  * Created object GO:0033117 of type obo:TERM.
  * Changed name of GO:0033117 from "<new term>" to "esterosome"
  * Added definition "A vesicle filled with crystalline protein that shows sequence similarities with various esterases."
  * Added definition dbxref GOC:ecd to GO:0033117
  * Added definition dbxref PMID:2307702 to GO:0033117
  * Copied esterosome (GO:0033117) (as OBO_REL:is_a), to cytoplasmic membrane-bound vesicle (GO:0016023)
  * Changed namespace of GO:0033117 from "null" to "cellular_component"
* Created new object GO:0033118 (macro)
  * Created object GO:0033118 of type obo:TERM.
  * Changed name of GO:0033118 from "<new term>" to "esterosome membrane"
  * Added definition "The lipid bilayer surrounding an esterosome. This membrane has characteristics of rough endoplasmic reticulum (RER) membranes."
  * Added definition dbxref GOC:ecd to GO:0033118
  * Added definition dbxref PMID:2307702 to GO:0033118
  * Copied esterosome membrane (GO:0033118) (as OBO_REL:is_a), to cytoplasmic vesicle membrane (GO:0030659)
  * Copied esterosome membrane (GO:0033118) (as part_of), to esterosome (GO:0033117)
  * Changed namespace of GO:0033118 from "null" to "cellular_component"
* Created new object GO:0043706 (macro)
  * Created object GO:0043706 of type obo:TERM.
  * Changed name of GO:0043706 from "<new term>" to "heterophilic cell adhesion during cytoadherence to microvasculature, mediated by parasite protein"
  * Added definition "The attachment of a parasite adhesion molecule to a nonidentical adhesion molecule on the microvasculature of a host cell, thereby adhering the parasite to the host cell."
  * Added definition dbxref GOC:jl to GO:0043706
  * Copied heterophilic cell adhesion during cytoadherence to microvasculature, mediated by parasite protein (GO:0043706) (as OBO_REL:is_a), to heterophilic cell adhesion (GO:0007157)
  * Copied heterophilic cell adhesion during cytoadherence to microvasculature, mediated by parasite protein (GO:0043706) (as part_of), to cytoadherence to microvasculature, mediated by parasite protein (GO:0020035)
  * Changed namespace of GO:0043706 from "null" to "biological_process"
* Created new object GO:0055045 (macro)
  * Created object GO:0055045 of type obo:TERM.
  * Changed name of GO:0055045 from "<new term>" to "antipodal cell degeneration"
  * Added definition "The process whereby the antipodal cells undergo programmed cell death."
  * Added definition dbxref GOC:mtg_plant to GO:0055045
  * Copied antipodal cell degeneration (GO:0055045) (as OBO_REL:is_a), to programmed cell death (GO:0012501)
  * Copied antipodal cell degeneration (GO:0055045) (as part_of), to megagametogenesis (GO:0009561)
  * Changed namespace of GO:0055045 from "null" to "biological_process"
* Created new object GO:0055046 (macro)
  * Created object GO:0055046 of type obo:TERM.
  * Changed name of GO:0055046 from "<new term>" to "microgametogenesis"
  * Added definition "The process whose specific outcome is the progression of the pollen grain over time, from its formation as the microspore to the mature structure."
  * Added definition dbxref GOC:mtg_plant to GO:0055046
  * Copied microgametogenesis (GO:0055046) (as OBO_REL:is_a), to developmental process (GO:0032502)
  * Copied microgametogenesis (GO:0055046) (as part_of), to pollen development (GO:0009555)
  * Changed namespace of GO:0055046 from "null" to "biological_process"
* Created new object GO:0060096 (macro)
  * Created object GO:0060096 of type obo:TERM.
  * Changed name of GO:0060096 from "<new term>" to "serotonin secretion, neurotransmission"
  * Added definition "The regulated release of serotonin by a cell or group of cells. During this process,serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine neurotransmitter synthesised in serotonergic neurons in the central nervous system and enterochromaffin cells in the gastrointestinal tract."
  * Added definition dbxref GOC:dph to GO:0060096
  * Copied serotonin secretion, neurotransmission (GO:0060096) (as OBO_REL:is_a), to neurotransmitter secretion (GO:0007269)
  * Copied serotonin secretion, neurotransmission (GO:0060096) (as OBO_REL:is_a), to serotonin secretion (GO:0001820)
  * Changed namespace of GO:0060096 from "null" to "biological_process"
* Created new object GO:0060097 (macro)
  * Created object GO:0060097 of type obo:TERM.
  * Changed name of GO:0060097 from "<new term>" to "cytoskeletal rearrangement involved in phagocytosis, engulfment"
  * Added definition "The assembly and arrangement of cytoskeletal structures that is involved in the internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis."
  * Added definition dbxref GOC:dph to GO:0060097
  * Copied cytoskeletal rearrangement involved in phagocytosis, engulfment (GO:0060097) (as OBO_REL:is_a), to cytoskeleton organization and biogenesis (GO:0007010)
  * Copied cytoskeletal rearrangement involved in phagocytosis, engulfment (GO:0060097) (as part_of), to phagocytosis, engulfment (GO:0006911)
  * Changed namespace of GO:0060097 from "null" to "biological_process"
* Created new object GO:0060098 (macro)
  * Created object GO:0060098 of type obo:TERM.
  * Changed name of GO:0060098 from "<new term>" to "membrane reorganization involved in phagocytosis, engulfment"
  * Added definition "The assembly and arrangement of the plasma membrane that is involved in the internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis."
  * Added definition dbxref GOC:dph to GO:0060098
  * Copied membrane reorganization involved in phagocytosis, engulfment (GO:0060098) (as part_of), to phagocytosis, engulfment (GO:0006911)
  * Copied membrane reorganization involved in phagocytosis, engulfment (GO:0060098) (as OBO_REL:is_a), to plasma membrane organization and biogenesis (GO:0007009)
  * Changed namespace of GO:0060098 from "null" to "biological_process"
* Created new object GO:0060099 (macro)
  * Created object GO:0060099 of type obo:TERM.
  * Changed name of GO:0060099 from "<new term>" to "regulation of phagocytosis, engulfment"
  * Added definition "Any process that modulates the frequency, rate or extent of the internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis."
  * Added definition dbxref GOC:dph to GO:0060099
  * Copied regulation of phagocytosis, engulfment (GO:0060099) (as OBO_REL:is_a), to regulation of phagocytosis (GO:0050764)
  * Copied regulation of phagocytosis, engulfment (GO:0060099) (as part_of), to phagocytosis, engulfment (GO:0006911)
  * Changed namespace of GO:0060099 from "null" to "biological_process"
* Created new object GO:0060100 (macro)
  * Created object GO:0060100 of type obo:TERM.
  * Changed name of GO:0060100 from "<new term>" to "positive regulation of phagocytosis, engulfment"
  * Added definition "Any process that activates or increases the frequency, rate or extent of the internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis."
  * Added definition dbxref GOC:dph to GO:0060100
  * Copied positive regulation of phagocytosis, engulfment (GO:0060100) (as OBO_REL:is_a), to regulation of phagocytosis, engulfment (GO:0060099)
  * Copied positive regulation of phagocytosis, engulfment (GO:0060100) (as OBO_REL:is_a), to positive regulation of phagocytosis (GO:0050766)
  * Changed namespace of GO:0060100 from "null" to "biological_process"
* Created new object GO:0060101 (macro)
  * Created object GO:0060101 of type obo:TERM.
  * Changed name of GO:0060101 from "<new term>" to "negative regulation of phagocytosis, engulfment"
  * Added definition "Any process that stops, prevents or reduces the frequency, rate or extent of the internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis."
  * Added definition dbxref GOC:dph to GO:0060101
  * Copied negative regulation of phagocytosis, engulfment (GO:0060101) (as OBO_REL:is_a), to negative regulation of phagocytosis (GO:0050765)
  * Copied negative regulation of phagocytosis, engulfment (GO:0060101) (as OBO_REL:is_a), to regulation of phagocytosis, engulfment (GO:0060099)
  * Changed namespace of GO:0060101 from "null" to "biological_process"
* Changed definition from "A complex that contains kinase activity directed towards the
C-terminal Domain (CTD) of the largest subunit of RNA polymerase II and is essential for initiation at RNA polymerase II promoters in vitro. In S. cerevisiae, it is composed of the 5-subunit core (Rad3, Tfb1, Tfb2, Ssl1, Tfb4), Ssl2p, and TFIIK (Kin28p, Ccl1p, and Tfb3p). All of the subunits have equivalents in humans: the 5 subunit core is composed of XPD, p62, p55, p44, p34; the equivalent of the TFIIK subcomplex is composed of MO15, Mat1, and a cyclin; the human equivalent of Ssl2p is XPB." to "A complex that contains kinase activity directed towards the C-terminal Domain (CTD) of the largest subunit of RNA polymerase II and is essential for initiation at RNA polymerase II promoters in vitro. In S. cerevisiae, it is composed of the 5-subunit core (Rad3, Tfb1, Tfb2, Ssl1, Tfb4), Ssl2p, and TFIIK (Kin28p, Ccl1p, and Tfb3p). All of the subunits have equivalents in humans: the 5 subunit core is composed of XPD, p62, p55, p44, p34; the equivalent of the TFIIK subcomplex is composed of MO15, Mat1, and a cyclin; the human equivalent of Ssl2p is XPB."
* Changed definition from "The SSL2-core TFIIH complex when it is part of the general
transcription factor TFIIH. It is composed of the tightly associated five subunit core TFIIH subcomplex plus one additional, less tighly associated subunit. The subunits are well conserved from yeast to humans. In S. cerevisiae, the 5-subunit core is composed of Rad3, Tfb1, Tfb2, Ssl1, Tfb4 and the loosely associated subunit is Ssl2p (also called Rad25). In humans, the 5 subunit core is composed of XPD, p62, p55, p44, p34 and the loosely associated subunit is XPB." to "The SSL2-core TFIIH complex when it is part of the general transcription factor TFIIH. It is composed of the tightly associated five subunit core TFIIH subcomplex plus one additional, less tighly associated subunit. The subunits are well conserved from yeast to humans. In S. cerevisiae, the 5-subunit core is composed of Rad3, Tfb1, Tfb2, Ssl1, Tfb4 and the loosely associated subunit is Ssl2p (also called Rad25). In humans, the 5 subunit core is composed of XPD, p62, p55, p44, p34 and the loosely associated subunit is XPB."
* Deleted cumulus cell differentiation (GO:0001549) from menstrual cycle process (GO:0022602) with OBO_REL:is_a
* Changed definition from "The regulated release of serotonin by a cell or group of cells. Serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine neurotransmitter synthesised in serotonergic neurons in the central nervous system and enterochromaffin cells in the gastrointestinal tract." to "The regulated release of serotonin by a cell or group of cells. Serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine synthesised in serotonergic neurons in the central nervous system, enterochromaffin cells in the gastrointestinal tract and some immune system cells."
* Deleted serotonin secretion (GO:0001820) from neurotransmitter secretion (GO:0007269) with OBO_REL:is_a
* Deleted serotonin secretion (GO:0001820) from hormone secretion (GO:0046879) with OBO_REL:is_a
* Copied serotonin secretion (GO:0001820) (as OBO_REL:is_a), to generation of a signal involved in cell-cell signaling (GO:0003001)
* Copied serotonin secretion (GO:0001820) (as OBO_REL:is_a), to secretion by cell (GO:0032940)
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 33ead8
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 7f1858
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 175d90
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1ffbad6
* Changed definition from "A complex that contains kinase activity directed towards the
C-terminal Domain (CTD) of the largest subunit of RNA polymerase II and is essential for initiation at RNA polymerase II promoters in vitro. In S. cerevisiae, it is composed of the 5-subunit core (Rad3, Tfb1, Tfb2, Ssl1, Tfb4), Ssl2p, and TFIIK (Kin28p, Ccl1p, and Tfb3p). All of the subunits have equivalents in humans: the 5 subunit core is composed of XPD, p62, p55, p44, p34; the equivalent of the TFIIK subcomplex is composed of MO15, Mat1, and a cyclin; the human equivalent of Ssl2p is XPB." to "A complex that contains kinase activity directed towards the C-terminal Domain (CTD) of the largest subunit of RNA polymerase II and is essential for initiation at RNA polymerase II promoters in vitro. In S. cerevisiae, it is composed of the 5-subunit core (Rad3, Tfb1, Tfb2, Ssl1, Tfb4), Ssl2p, and TFIIK (Kin28p, Ccl1p, and Tfb3p). All of the subunits have equivalents in humans: the 5 subunit core is composed of XPD, p62, p55, p44, p34; the equivalent of the TFIIK subcomplex is composed of MO15, Mat1, and a cyclin; the human equivalent of Ssl2p is XPB."
* Changed definition from "A body found in cells where the endoplasmic reticulum is located several micrometers from the Golgi complex, formed from COP II coated vesicles that fuse with each other shortly after their formation." to "A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport."
* org.geneontology.oboedit.datamodel.history.DelDbxrefHistoryItem at 433dc1
* Added definition dbxref PMID:16723730 to GO:0005793
* Deleted phagocytosis, engulfment (GO:0006911) from cytoskeleton organization and biogenesis (GO:0007010) with OBO_REL:is_a
* Deleted phagocytosis, engulfment (GO:0006911) from plasma membrane organization and biogenesis (GO:0007009) with OBO_REL:is_a
* Copied phagocytosis, engulfment (GO:0006911) (as OBO_REL:is_a), to membrane invagination (GO:0010324)
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 8b6be3
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1582b57
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1858887
* Added general dbxref GOC:dph to synonym neurotransmission of GO:0007268
* Deleted chloroplast thylakoid membrane (GO:0009535) from thylakoid membrane (GO:0042651) with OBO_REL:is_a
* Copied chloroplast thylakoid membrane (GO:0009535) (as OBO_REL:is_a), to plastid thylakoid membrane (GO:0055035)
* Changed definition from "The process whose specific outcome is the progression of the embryo sac over time, from its formation to the mature structure. The process begins with the meiosis of the megasporocyte to form four haploid megaspores. Three of the megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center." to "The process whose specific outcome is the progression of the embryo sac over time, from its formation to the mature structure. The process begins with the meiosis of the megasporocyte to form four haploid megaspores. Three of the megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. The two polar nuclei fuse resulting in a mononucleate diploid endosperm mother cell. The three antipodal cells degenerate."
* Changed name of GO:0009555 from "male gametophyte development" to "pollen development"
* Changed definition from "The process whose specific outcome is the progression of the male gametophyte over time, from its formation to the mature structure. This begins with the haploid microspores and ends with the mature microgametophytes containing the gametes (pollen)." to "The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates."
* Added definition dbxref GOC:mtg_plant to GO:0009555
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1c65f07
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 88c88d
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 26dab3
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at e0304f
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 83cd74
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 125aa1f
* Changed definition from "The formation and development of haploid microspores from diploid sporogenous cells. Microspores are any of the spores in heterosporous plants that give rise to male gametophytes and are generally smaller than the megaspore." to "The process by which the microsporocyte undergoes meiosis, giving rise to four haploid microspores."
* Added definition dbxref GOC:mtg_plant to GO:0009556
* Copied microsporogenesis (GO:0009556) (as OBO_REL:is_a), to meiosis (GO:0007126)
* Changed definition from "The process whereby the two uncellularized polar nuclei cellularize and acquire the specialized features of a binucleate endosperm mother cell." to "The process whereby the two uncellularized polar nuclei cellularize, fuse and acquire the specialized features of a mononucleate diploid central cell."
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1c402d7
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 196b2c9
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at b3b94c
* Deleted cyanelle thylakoid (GO:0009843) from thylakoid (GO:0009579) with OBO_REL:is_a
* Deleted cyanelle thylakoid (GO:0009843) from plastid part (GO:0044435) with OBO_REL:is_a
* Copied cyanelle thylakoid (GO:0009843) (as OBO_REL:is_a), to plastid thylakoid (GO:0031976)
* Deleted nodulation (GO:0009877) from multicellular organismal process (GO:0032501) with OBO_REL:is_a
* Changed name of GO:0010026 from "trichome differentiation (sensu Magnoliophyta)" to "trichome differentiation"
* Changed definition from "The process whereby a relatively unspecialized epidermal cell acquires the specialized features of a trichome cell; as in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398)." to "The process whereby a relatively unspecialized epidermal cell acquires the specialized features of a trichome cell."
* Added definition dbxref GOC:mtg_sensu to GO:0010026
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 14a3525
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at e713e0
* Changed name of GO:0010090 from "trichome morphogenesis (sensu Magnoliophyta)" to "trichome morphogenesis"
* Changed definition from "The process by which the structures of a hair cell (trichome) cell are generated and organized. This process occurs while the initially relatively unspecialized epidermal cell is acquiring the specialized features of a hair cell. As in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398)." to "The process by which the structures of a hair cell (trichome) cell are generated and organized. This process occurs while the initially relatively unspecialized epidermal cell is acquiring the specialized features of a hair cell."
* Added definition dbxref GOC:mtg_sensu to GO:0010090
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at c9e3e5
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 910628
* Changed name of GO:0010091 from "trichome branching (sensu Magnoliophyta)" to "trichome branching"
* Changed definition from "The processes involved in the formation of branches in plant hair cells (trichomes); as in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398)." to "The processes involved in the formation of branches in plant hair cells."
* Added definition dbxref GOC:mtg_sensu to GO:0010091
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 12b63c7
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1a3b0e1
* Added definition dbxref GOC:mtg_plant to GO:0010197
* Deleted polar nucleus fusion (GO:0010197) from megagametogenesis (GO:0009561) with part_of
* Copied polar nucleus fusion (GO:0010197) (as part_of), to embryo sac central cell differentiation (GO:0009559)
* Changed name of GO:0010325 from "raffinose family oligosaccharide biosynthesis" to "raffinose family oligosaccharide biosynthesic process"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1b1a678
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 2828be
* Deleted cytoadherence to microvasculature, mediated by parasite protein (GO:0020035) from heterophilic cell adhesion (GO:0007157) with OBO_REL:is_a
* Deleted generative cell differentiation (GO:0022619) from pollen development (GO:0009555) with part_of
* Copied generative cell differentiation (GO:0022619) (as part_of), to microgametogenesis (GO:0055046)
* Deleted vegetative cell differentiation (GO:0022620) from pollen development (GO:0009555) with part_of
* Copied vegetative cell differentiation (GO:0022620) (as part_of), to microgametogenesis (GO:0055046)
* Changed name of GO:0035316 from "trichome organization and biogenesis (sensu Insecta)" to "non-sensory hair organization and biogenesis"
* Changed definition from "Formation and arrangement of hairs (trichomes), polarized cellular extensions that cover much of the insect epidermis. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." to "The assembly and arrangement of non-sensory hairs. These hairs are polarized cellular extensions that cover much of the insect epidermis."
* Added definition dbxref GOC:mtg_sensu to GO:0035316
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 8aeebf
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 14068f5
* Deleted serotonin metabolic process (GO:0042428) from neurotransmitter metabolic process (GO:0042133) with OBO_REL:is_a
* Deleted serotonin metabolic process (GO:0042428) from hormone metabolic process (GO:0042445) with OBO_REL:is_a
* Changed name of GO:0043705 from "cyanophycin metabolism" to "cyanophycin metabolic process"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1aae4dc
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 9737c2
* Changed name of GO:0048629 from "trichome patterning (sensu Magnoliophyta)" to "trichome patterning"
* Changed definition from "The regionalization process of establishing the non-random spatial arrangement of trichomes on the surface and margin of a leaf. Process involves signaling between adjacent epidermal cells that results in differentiation of some epidermal cells into trichomes. As in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398)." to "The regionalization process of establishing the non-random spatial arrangement of trichomes on the surface and margin of a leaf. Process involves signaling between adjacent epidermal cells that results in differentiation of some epidermal cells into trichomes."
* Added definition dbxref GOC:mtg_sensu to GO:0048629
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1cda803
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at d16b37
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at d61675
* Changed name of GO:0052314 from "phytoalexin metabolism" to "phytoalexin metabolic process"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 15c921f
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 7d3813
* Changed name of GO:0052315 from "phytoalexin biosynthesis" to "phytoalexin biosynthesic process"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at ec845e
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1e64a42
* Changed name of GO:0052316 from "phytoalexin catabolism" to "phytoalexin catabolic process"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 154577
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 83baf6
* Changed name of GO:0052317 from "camalexin metabolism" to "camalexin metabolic process"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 67855c
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 646788
* Changed name of GO:0052318 from "regulation of phytoalexin metabolism" to "regulation of phytoalexin metabolic process"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c92c97
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 8e83f6
* Changed name of GO:0052319 from "regulation of phytoalexin biosynthesis" to "regulation of phytoalexin biosynthesic process"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 799e3a
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 82f62e
* Changed name of GO:0052320 from "positive regulation of phytoalexin metabolism" to "positive regulation of phytoalexin metabolic process"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1f07b9c
* Changed name of GO:0052321 from "negative regulation of phytoalexin metabolism" to "negative regulation of phytoalexin metabolic process"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1437727
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 43c5fe
* Changed name of GO:0052322 from "positive regulation of phytoalexin biosynthesis" to "positive regulation of phytoalexin biosynthesic process"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 17bb637
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at f8101c
* Changed name of GO:0052323 from "negative regulation of phytoalexin biosynthesis" to "negative regulation of phytoalexin biosynthesic process"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1e9be90
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at dde819
* Changed name of GO:0052324 from "cell wall cellulose biosynthesis" to "cell wall cellulose biosynthesic process"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at b0df80
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 216ca7
* Changed name of GO:0052325 from "cell wall pectin biosynthesis" to "cell wall pectin biosynthesic process"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 647003
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1f610a7
* Changed name of GO:0052541 from "cell wall cellulose metabolism" to "cell wall cellulose metabolic process"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1bf7c57
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 7c4f52
* Changed name of GO:0052546 from "cell wall pectin metabolism" to "cell wall pectin metabolic process"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 13ba855
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1a89758
* Copied plastid thylakoid membrane (GO:0055035) (as OBO_REL:is_a), to thylakoid membrane (GO:0042651)


From gocvs at genome.Stanford.EDU  Thu Apr  5 21:31:07 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Thu, 5 Apr 2007 21:31:07 -0700 (PDT)
Subject: GO update 04/05/2007
Message-ID: <200704060431.VAA06910@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.271 by 5.273

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created new object GO:0033119 (macro)
  * Created object GO:0033119 of type obo:TERM.
  * Changed name of GO:0033119 from "<new term>" to "negative regulation of RNA splicing"
  * Added definition "Any process that stops, prevents or reduces the frequency, rate or extent of RNA splicing."
  * Added definition dbxref GOC:mah to GO:0033119
  * Copied negative regulation of RNA splicing (GO:0033119) (as OBO_REL:is_a), to regulation of RNA splicing (GO:0043484)
  * Copied negative regulation of RNA splicing (GO:0033119) (as OBO_REL:is_a), to negative regulation of RNA metabolic process (GO:0051253)
  * Changed namespace of GO:0033119 from "null" to "biological_process"
* Created new object GO:0033120 (macro)
  * Created object GO:0033120 of type obo:TERM.
  * Changed name of GO:0033120 from "<new term>" to "positive regulation of RNA splicing"
  * Added definition "Any process that activates or increases the frequency, rate or extent of RNA splicing."
  * Added definition dbxref GOC:mah to GO:0033120
  * Copied positive regulation of RNA splicing (GO:0033120) (as OBO_REL:is_a), to regulation of RNA splicing (GO:0043484)
  * Copied positive regulation of RNA splicing (GO:0033120) (as OBO_REL:is_a), to positive regulation of RNA metabolic process (GO:0051254)
  * Changed namespace of GO:0033120 from "null" to "biological_process"
* Created new object GO:0033121 (macro)
  * Created object GO:0033121 of type obo:TERM.
  * Changed name of GO:0033121 from "<new term>" to "regulation of purine nucleotide catabolic process"
  * Added definition "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides."
  * Added definition dbxref GOC:mah to GO:0033121
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at dca4f3
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1d175f7
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 97e895
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 126bba3
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1e8fa1c
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 7c518e
  * Copied regulation of purine nucleotide catabolic process (GO:0033121) (as part_of), to purine nucleotide catabolic process (GO:0006195)
  * Copied regulation of purine nucleotide catabolic process (GO:0033121) (as OBO_REL:is_a), to regulation of nucleotide catabolic process (GO:0030811)
  * Changed namespace of GO:0033121 from "null" to "biological_process"
* Created new object GO:0033122 (macro)
  * Created object GO:0033122 of type obo:TERM.
  * Changed name of GO:0033122 from "<new term>" to "negative regulation of purine nucleotide catabolic process"
  * Added definition "Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides."
  * Added definition dbxref GOC:mah to GO:0033122
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1ce4910
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1ebb63
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1a08fd4
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 42db6c
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 15397cb
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1129b5d
  * Copied negative regulation of purine nucleotide catabolic process (GO:0033122) (as OBO_REL:is_a), to regulation of purine nucleotide catabolic process (GO:0033121)
  * Copied negative regulation of purine nucleotide catabolic process (GO:0033122) (as OBO_REL:is_a), to negative regulation of nucleotide catabolic process (GO:0030812)
  * Changed namespace of GO:0033122 from "null" to "biological_process"
* Created new object GO:0033123 (macro)
  * Created object GO:0033123 of type obo:TERM.
  * Changed name of GO:0033123 from "<new term>" to "positive regulation of purine nucleotide catabolic process"
  * Added definition "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides."
  * Added definition dbxref GOC:mah to GO:0033123
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 9608a8
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 125b3a
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1237651
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 12ce34d
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1fee22b
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at b28576
  * Copied positive regulation of purine nucleotide catabolic process (GO:0033123) (as OBO_REL:is_a), to positive regulation of nucleotide catabolic process (GO:0030813)
  * Copied positive regulation of purine nucleotide catabolic process (GO:0033123) (as OBO_REL:is_a), to regulation of purine nucleotide catabolic process (GO:0033121)
  * Changed namespace of GO:0033123 from "null" to "biological_process"
* Created new object GO:0033124 (macro)
  * Created object GO:0033124 of type obo:TERM.
  * Changed name of GO:0033124 from "<new term>" to "regulation of GTP catabolic process"
  * Added definition "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of GTP, guanosine triphosphate."
  * Added definition dbxref GOC:mah to GO:0033124
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 58119e
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1ecadaf
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 17edeff
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 626c6e
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1bcc7b4
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at db048b
  * Copied regulation of GTP catabolic process (GO:0033124) (as part_of), to GTP catabolic process (GO:0006184)
  * Copied regulation of GTP catabolic process (GO:0033124) (as OBO_REL:is_a), to regulation of purine nucleotide catabolic process (GO:0033121)
  * Changed namespace of GO:0033124 from "null" to "biological_process"
* Created new object GO:0033125 (macro)
  * Created object GO:0033125 of type obo:TERM.
  * Changed name of GO:0033125 from "<new term>" to "negative regulation of GTP catabolic process"
  * Added definition "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of GTP, guanosine triphosphate."
  * Added definition dbxref GOC:mah to GO:0033125
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1076a1f
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1c81fe7
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1a6a8d8
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 970a10
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 15a6e5
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1800ca2
  * Copied negative regulation of GTP catabolic process (GO:0033125) (as OBO_REL:is_a), to regulation of GTP catabolic process (GO:0033124)
  * Copied negative regulation of GTP catabolic process (GO:0033125) (as OBO_REL:is_a), to negative regulation of purine nucleotide catabolic process (GO:0033122)
  * Changed namespace of GO:0033125 from "null" to "biological_process"
* Created new object GO:0033126 (macro)
  * Created object GO:0033126 of type obo:TERM.
  * Changed name of GO:0033126 from "<new term>" to "positive regulation of GTP catabolic process"
  * Added definition "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of GTP, guanosine triphosphate."
  * Added definition dbxref GOC:mah to GO:0033126
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1bda00c
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 56a5f5
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at a9ad57
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1b3334c
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1ecfdeb
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 128dd6
  * Copied positive regulation of GTP catabolic process (GO:0033126) (as OBO_REL:is_a), to regulation of GTP catabolic process (GO:0033124)
  * Copied positive regulation of GTP catabolic process (GO:0033126) (as OBO_REL:is_a), to positive regulation of purine nucleotide catabolic process (GO:0033123)
  * Changed namespace of GO:0033126 from "null" to "biological_process"
* Created new object GO:0033127 (macro)
  * Created object GO:0033127 of type obo:TERM.
  * Changed name of GO:0033127 from "<new term>" to "regulation of histone phosphorylation"
  * Added definition "Any process that modulates the frequency, rate or extent of the addition of one or more phosphate groups to a histone protein."
  * Added definition dbxref GOC:mah to GO:0033127
  * Copied regulation of histone phosphorylation (GO:0033127) (as OBO_REL:is_a), to regulation of histone modification (GO:0031056)
  * Copied regulation of histone phosphorylation (GO:0033127) (as part_of), to histone phosphorylation (GO:0016572)
  * Changed namespace of GO:0033127 from "null" to "biological_process"
* Created new object GO:0033128 (macro)
  * Created object GO:0033128 of type obo:TERM.
  * Changed name of GO:0033128 from "<new term>" to "negative regulation of histone phosphorylation"
  * Added definition "Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of one or more phosphate groups to a histone protein."
  * Added definition dbxref GOC:mah to GO:0033128
  * Copied negative regulation of histone phosphorylation (GO:0033128) (as OBO_REL:is_a), to regulation of histone phosphorylation (GO:0033127)
  * Copied negative regulation of histone phosphorylation (GO:0033128) (as OBO_REL:is_a), to negative regulation of histone modification (GO:0031057)
  * Changed namespace of GO:0033128 from "null" to "biological_process"
* Created new object GO:0033129 (macro)
  * Created object GO:0033129 of type obo:TERM.
  * Changed name of GO:0033129 from "<new term>" to "positive regulation of histone phosphorylation"
  * Added definition "Any process that activates or increases the frequency, rate or extent of the addition of one or more phosphate groups to a histone protein."
  * Added definition dbxref GOC:mah to GO:0033129
  * Copied positive regulation of histone phosphorylation (GO:0033129) (as OBO_REL:is_a), to positive regulation of histone modification (GO:0031058)
  * Copied positive regulation of histone phosphorylation (GO:0033129) (as OBO_REL:is_a), to regulation of histone phosphorylation (GO:0033127)
  * Changed namespace of GO:0033129 from "null" to "biological_process"
* Created new object GO:0033130 (macro)
  * Created object GO:0033130 of type obo:TERM.
  * Changed name of GO:0033130 from "<new term>" to "acetylcholine receptor binding"
  * Added definition "Interacting selectively with an acetylcholine receptor."
  * Added definition dbxref GOC:mah to GO:0033130
  * Copied acetylcholine receptor binding (GO:0033130) (as OBO_REL:is_a), to receptor binding (GO:0005102)
  * Changed namespace of GO:0033130 from "null" to "molecular_function"
* Created new object GO:0033131 (macro)
  * Created object GO:0033131 of type obo:TERM.
  * Changed name of GO:0033131 from "<new term>" to "regulation of glucokinase activity"
  * Added definition "Any process that modulates the frequency, rate or extent of glucokinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a glucose molecule."
  * Added definition dbxref GOC:mah to GO:0033131
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1db8452
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at cc30c1
  * Copied regulation of glucokinase activity (GO:0033131) (as OBO_REL:is_a), to regulation of kinase activity (GO:0043549)
  * Changed namespace of GO:0033131 from "null" to "biological_process"
* Created new object GO:0033132 (macro)
  * Created object GO:0033132 of type obo:TERM.
  * Changed name of GO:0033132 from "<new term>" to "negative regulation of glucokinase activity"
  * Added definition "Any process that stops, prevents, or reduces the frequency, rate or extent of glucokinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a glucose molecule."
  * Added definition dbxref GOC:mah to GO:0033132
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 194dca5
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 21ff81
  * Copied negative regulation of glucokinase activity (GO:0033132) (as OBO_REL:is_a), to regulation of glucokinase activity (GO:0033131)
  * Copied negative regulation of glucokinase activity (GO:0033132) (as OBO_REL:is_a), to negative regulation of transferase activity (GO:0051348)
  * Changed namespace of GO:0033132 from "null" to "biological_process"
* Created new object GO:0033133 (macro)
  * Created object GO:0033133 of type obo:TERM.
  * Changed name of GO:0033133 from "<new term>" to "positive regulation of glucokinase activity"
  * Added definition "Any process that activates or increases the frequency, rate or extent of glucokinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a glucose molecule."
  * Added definition dbxref GOC:mah to GO:0033133
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at d9847
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 88790a
  * Copied positive regulation of glucokinase activity (GO:0033133) (as OBO_REL:is_a), to regulation of glucokinase activity (GO:0033131)
  * Copied positive regulation of glucokinase activity (GO:0033133) (as OBO_REL:is_a), to positive regulation of transferase activity (GO:0051347)
  * Changed namespace of GO:0033133 from "null" to "biological_process"
* Created new object GO:0033134 (macro)
  * Created object GO:0033134 of type obo:TERM.
  * Changed name of GO:0033134 from "<new term>" to "ubiquitin activating enzyme binding"
  * Added definition "Interacting selectively with a ubiquitin activating enzyme, any of the E1 proteins."
  * Added definition dbxref GOC:mah to GO:0033134
  * Copied ubiquitin activating enzyme binding (GO:0033134) (as OBO_REL:is_a), to enzyme binding (GO:0019899)
  * Changed namespace of GO:0033134 from "null" to "molecular_function"
* Created new object GO:0033135 (macro)
  * Created object GO:0033135 of type obo:TERM.
  * Changed name of GO:0033135 from "<new term>" to "regulation of peptidyl-serine phosphorylation"
  * Added definition "Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-serine."
  * Added definition dbxref GOC:mah to GO:0033135
  * Added GO:0033135 to category gosubset_prok
  * Copied regulation of peptidyl-serine phosphorylation (GO:0033135) (as OBO_REL:is_a), to regulation of protein amino acid phosphorylation (GO:0001932)
  * Copied regulation of peptidyl-serine phosphorylation (GO:0033135) (as OBO_REL:is_a), to regulation of protein metabolic process (GO:0051246)
  * Copied regulation of peptidyl-serine phosphorylation (GO:0033135) (as part_of), to peptidyl-serine phosphorylation (GO:0018105)
  * Changed namespace of GO:0033135 from "null" to "biological_process"
* Created new object GO:0033136 (macro)
  * Created object GO:0033136 of type obo:TERM.
  * Changed name of GO:0033136 from "<new term>" to "serine phosphorylation of STAT3 protein"
  * Added definition "The process of introducing a phosphoric group to a serine residue of the STAT3 protein."
  * Added definition dbxref GOC:jl to GO:0033136
  * Added definition dbxref GOC:mah to GO:0033136
  * Copied serine phosphorylation of STAT3 protein (GO:0033136) (as OBO_REL:is_a), to serine phosphorylation of STAT protein (GO:0042501)
  * Changed namespace of GO:0033136 from "null" to "biological_process"
* Created new object GO:0033137 (macro)
  * Created object GO:0033137 of type obo:TERM.
  * Changed name of GO:0033137 from "<new term>" to "negative regulation of peptidyl-serine phosphorylation"
  * Added definition "Any process that stops, prevents, or reduces the frequency, rate or extent of the phosphorylation of peptidyl-serine."
  * Added definition dbxref GOC:mah to GO:0033137
  * Copied negative regulation of peptidyl-serine phosphorylation (GO:0033137) (as OBO_REL:is_a), to regulation of peptidyl-serine phosphorylation (GO:0033135)
  * Copied negative regulation of peptidyl-serine phosphorylation (GO:0033137) (as OBO_REL:is_a), to negative regulation of protein amino acid phosphorylation (GO:0001933)
  * Changed namespace of GO:0033137 from "null" to "biological_process"
* Created new object GO:0033138 (macro)
  * Created object GO:0033138 of type obo:TERM.
  * Changed name of GO:0033138 from "<new term>" to "positive regulation of peptidyl-serine phosphorylation"
  * Added definition "Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-serine."
  * Added definition dbxref GOC:mah to GO:0033138
  * Copied positive regulation of peptidyl-serine phosphorylation (GO:0033138) (as OBO_REL:is_a), to positive regulation of protein amino acid phosphorylation (GO:0001934)
  * Copied positive regulation of peptidyl-serine phosphorylation (GO:0033138) (as OBO_REL:is_a), to regulation of peptidyl-serine phosphorylation (GO:0033135)
  * Changed namespace of GO:0033138 from "null" to "biological_process"
* Created new object GO:0033139 (macro)
  * Created object GO:0033139 of type obo:TERM.
  * Changed name of GO:0033139 from "<new term>" to "regulation of peptidyl-serine phosphorylation of STAT protein"
  * Added definition "Any process that modulates the frequency, rate or extent of the phosphorylation of a serine residue of a STAT (Signal Transducer and Activator of Transcription) protein."
  * Added definition dbxref GOC:mah to GO:0033139
  * Added GO:0033139 to category gosubset_prok
  * Copied regulation of peptidyl-serine phosphorylation of STAT protein (GO:0033139) (as OBO_REL:is_a), to regulation of protein amino acid phosphorylation (GO:0001932)
  * Copied regulation of peptidyl-serine phosphorylation of STAT protein (GO:0033139) (as OBO_REL:is_a), to regulation of protein metabolic process (GO:0051246)
  * Copied regulation of peptidyl-serine phosphorylation of STAT protein (GO:0033139) (as part_of), to serine phosphorylation of STAT protein (GO:0042501)
  * Changed namespace of GO:0033139 from "null" to "biological_process"
* Created new object GO:0033140 (macro)
  * Created object GO:0033140 of type obo:TERM.
  * Changed name of GO:0033140 from "<new term>" to "negative regulation of peptidyl-serine phosphorylation of STAT protein"
  * Added definition "Any process that stops, prevents or reduces the frequency, rate or extent of the phosphorylation of a serine residue of a STAT (Signal Transducer and Activator of Transcription) protein."
  * Added definition dbxref GOC:mah to GO:0033140
  * Added GO:0033140 to category gosubset_prok
  * Copied negative regulation of peptidyl-serine phosphorylation of STAT protein (GO:0033140) (as OBO_REL:is_a), to regulation of protein metabolic process (GO:0051246)
  * Copied negative regulation of peptidyl-serine phosphorylation of STAT protein (GO:0033140) (as OBO_REL:is_a), to negative regulation of peptidyl-serine phosphorylation (GO:0033137)
  * Copied negative regulation of peptidyl-serine phosphorylation of STAT protein (GO:0033140) (as OBO_REL:is_a), to regulation of peptidyl-serine phosphorylation of STAT protein (GO:0033139)
  * Changed namespace of GO:0033140 from "null" to "biological_process"
* Created new object GO:0033141 (macro)
  * Created object GO:0033141 of type obo:TERM.
  * Changed name of GO:0033141 from "<new term>" to "positive regulation of peptidyl-serine phosphorylation of STAT protein"
  * Added definition "Any process that activates or increases the frequency, rate or extent of the phosphorylation of a serine residue of a STAT (Signal Transducer and Activator of Transcription) protein."
  * Added definition dbxref GOC:mah to GO:0033141
  * Added GO:0033141 to category gosubset_prok
  * Copied positive regulation of peptidyl-serine phosphorylation of STAT protein (GO:0033141) (as OBO_REL:is_a), to positive regulation of peptidyl-serine phosphorylation (GO:0033138)
  * Copied positive regulation of peptidyl-serine phosphorylation of STAT protein (GO:0033141) (as OBO_REL:is_a), to regulation of protein metabolic process (GO:0051246)
  * Copied positive regulation of peptidyl-serine phosphorylation of STAT protein (GO:0033141) (as OBO_REL:is_a), to regulation of peptidyl-serine phosphorylation of STAT protein (GO:0033139)
  * Changed namespace of GO:0033141 from "null" to "biological_process"
* Created new object GO:0033142 (macro)
  * Created object GO:0033142 of type obo:TERM.
  * Changed name of GO:0033142 from "<new term>" to "progesterone receptor binding"
  * Added definition "Interacting selectively with a progesterone receptor."
  * Added definition dbxref GOC:mah to GO:0033142
  * Copied progesterone receptor binding (GO:0033142) (as OBO_REL:is_a), to steroid hormone receptor binding (GO:0035258)
  * Changed namespace of GO:0033142 from "null" to "molecular_function"
* Created new object GO:0033143 (macro)
  * Created object GO:0033143 of type obo:TERM.
  * Changed name of GO:0033143 from "<new term>" to "regulation of steroid hormone receptor signaling pathway"
  * Added definition "Any process that modulates the frequency, rate or extent of the activity of any steroid hormone receptor signaling pathway."
  * Added definition dbxref GOC:mah to GO:0033143
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 515139
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at abacbd
  * Copied regulation of steroid hormone receptor signaling pathway (GO:0033143) (as part_of), to steroid hormone receptor signaling pathway (GO:0030518)
  * Copied regulation of steroid hormone receptor signaling pathway (GO:0033143) (as OBO_REL:is_a), to regulation of signal transduction (GO:0009966)
  * Changed namespace of GO:0033143 from "null" to "biological_process"
* Created new object GO:0033144 (macro)
  * Created object GO:0033144 of type obo:TERM.
  * Changed name of GO:0033144 from "<new term>" to "negative regulation of steroid hormone receptor signaling pathway"
  * Added definition "Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of any steroid hormone receptor signaling pathway."
  * Added definition dbxref GOC:mah to GO:0033144
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at d9d4a4
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 11790c3
  * Copied negative regulation of steroid hormone receptor signaling pathway (GO:0033144) (as OBO_REL:is_a), to regulation of steroid hormone receptor signaling pathway (GO:0033143)
  * Copied negative regulation of steroid hormone receptor signaling pathway (GO:0033144) (as OBO_REL:is_a), to negative regulation of signal transduction (GO:0009968)
  * Changed namespace of GO:0033144 from "null" to "biological_process"
* Created new object GO:0033145 (macro)
  * Created object GO:0033145 of type obo:TERM.
  * Changed name of GO:0033145 from "<new term>" to "positive regulation of steroid hormone receptor signaling pathway"
  * Added definition "Any process that activates or increases the frequency, rate or extent of the activity of any steroid hormone receptor signaling pathway."
  * Added definition dbxref GOC:mah to GO:0033145
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 210d70
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1f94384
  * Copied positive regulation of steroid hormone receptor signaling pathway (GO:0033145) (as OBO_REL:is_a), to regulation of steroid hormone receptor signaling pathway (GO:0033143)
  * Copied positive regulation of steroid hormone receptor signaling pathway (GO:0033145) (as OBO_REL:is_a), to positive regulation of signal transduction (GO:0009967)
  * Changed namespace of GO:0033145 from "null" to "biological_process"
* Created new object GO:0033146 (macro)
  * Created object GO:0033146 of type obo:TERM.
  * Changed name of GO:0033146 from "<new term>" to "regulation of estrogen receptor signaling pathway"
  * Added definition "Any process that modulates the frequency, rate or extent of the activity of an estrogen receptor signaling pathway."
  * Added definition dbxref GOC:mah to GO:0033146
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1bf9540
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at dfa9f4
  * Copied regulation of estrogen receptor signaling pathway (GO:0033146) (as part_of), to estrogen receptor signaling pathway (GO:0030520)
  * Copied regulation of estrogen receptor signaling pathway (GO:0033146) (as OBO_REL:is_a), to regulation of steroid hormone receptor signaling pathway (GO:0033143)
  * Changed namespace of GO:0033146 from "null" to "biological_process"
* Created new object GO:0033147 (macro)
  * Created object GO:0033147 of type obo:TERM.
  * Changed name of GO:0033147 from "<new term>" to "negative regulation of estrogen receptor signaling pathway"
  * Added definition "Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of an estrogen receptor signaling pathway."
  * Added definition dbxref GOC:mah to GO:0033147
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at f0c10
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1e125dc
  * Copied negative regulation of estrogen receptor signaling pathway (GO:0033147) (as OBO_REL:is_a), to negative regulation of steroid hormone receptor signaling pathway (GO:0033144)
  * Copied negative regulation of estrogen receptor signaling pathway (GO:0033147) (as OBO_REL:is_a), to regulation of estrogen receptor signaling pathway (GO:0033146)
  * Changed namespace of GO:0033147 from "null" to "biological_process"
* Created new object GO:0033148 (macro)
  * Created object GO:0033148 of type obo:TERM.
  * Changed name of GO:0033148 from "<new term>" to "positive regulation of estrogen receptor signaling pathway"
  * Added definition "Any process that activates or increases the frequency, rate or extent of the activity of an estrogen receptor signaling pathway."
  * Added definition dbxref GOC:mah to GO:0033148
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 7cb77c
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1f2520b
  * Copied positive regulation of estrogen receptor signaling pathway (GO:0033148) (as OBO_REL:is_a), to positive regulation of steroid hormone receptor signaling pathway (GO:0033145)
  * Copied positive regulation of estrogen receptor signaling pathway (GO:0033148) (as OBO_REL:is_a), to regulation of estrogen receptor signaling pathway (GO:0033146)
  * Changed namespace of GO:0033148 from "null" to "biological_process"
* Changed name of GO:0005213 from "structural constituent of chorion (sensu Insecta)" to "structural constituent of chorion"
* Changed definition from "The action of a molecule that contributes to the structural integrity of a chorion. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." to "The action of a molecule that contributes to the structural integrity of a chorion."
* Added definition dbxref GOC:sensu to GO:0005213
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1e863a3
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1e58736
* Changed name of GO:0007484 from "genitalia development (sensu Endopterygota)" to "imaginal disc-derived genitalia development"
* Changed definition from "The process whose specific outcome is the progression of the genitalia over time, from formation as part of the genital disc to the mature structure. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." to "The process whose specific outcome is the progression of the genitalia over time, from formation as part of the genital disc to the mature structure."
* Added definition dbxref GOC:sensu to GO:0007484
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 10208a
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at c8733e
* Changed name of GO:0007485 from "male genitalia development (sensu Endopterygota)" to "imaginal disc-derived male genitalia development"
* Changed definition from "The process whose specific outcome is the progression of the male genitalia over time, from formation as part of the genital disc to the mature structure. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." to "The process whose specific outcome is the progression of the male genitalia over time, from formation as part of the genital disc to the mature structure."
* Added definition dbxref GOC:sensu to GO:0007485
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 5ff56
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1be80c2
* Changed name of GO:0007486 from "female genitalia development (sensu Endopterygota)" to "imaginal disc-derived female genitalia development"
* Changed definition from "The process whose specific outcome is the progression of the female genitalia over time, from formation as part of the genital disc to the mature structure. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." to "The process whose specific outcome is the progression of the female genitalia over time, from formation as part of the genital disc to the mature structure."
* Added definition dbxref GOC:sensu to GO:0007486
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1f754f0
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at e97f86
* added secondary id GO:0046698 to GO:0007552
* added secondary id GO:0046699 to GO:0007552
* Changed definition from "A change of shape or structure of the whole organism from one developmental stage to another, particularly the rapid post embryonic structural transformation from larval to adult form." to "A biological process by which an animal physically develops after birth or hatching, involving a conspicuous and relatively abrupt change in the animal's form or structure. For example the change from tadpole to frog, and the change from larva to adult."
* Added definition dbxref GOC:sensu to GO:0007552
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1b3650b
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at aec155
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 116b4d3
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1b99897
* Copied metamorphosis (GO:0007552) (as OBO_REL:is_a), to larval development (sensu Amphibia) (GO:0002117)
* Copied metamorphosis (GO:0007552) (as part_of), to instar larval or pupal development (GO:0002165)
* Deleted imaginal disc morphogenesis (GO:0007560) from GO:0046698 with part_of
* Copied imaginal disc morphogenesis (GO:0007560) (as part_of), to metamorphosis (GO:0007552)
* Changed name of GO:0008316 from "structural constituent of vitelline membrane (sensu Insecta)" to "structural constituent of vitelline membrane"
* Changed definition from "The action of a molecule that contributes to the structural integrity of the vitelline membrane of an egg. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." to "The action of a molecule that contributes to the structural integrity of the vitelline membrane of an egg."
* Added definition dbxref GOC:sensu to GO:0008316
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1d0e784
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at faeeb
* Changed name of GO:0016543 from "male courtship behavior (sensu Insecta), orientation" to "male courtship behavior, orientation prior to leg tapping and wing vibration"
* Changed definition from "The process during courtship, where the male orients towards a potential partner. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." to "The process during courtship, where the male orients towards a potential partner."
* Added definition dbxref GOC:sensu to GO:0016543
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1a4d19d
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1bdcb79
* Changed name of GO:0035193 from "central nervous system remodeling (sensu Insecta)" to "larval central nervous system remodeling"
* Changed definition from "Reorganization of the preexisting, functional larval central nervous system into one that can serve the novel behavioral needs of the adult. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." to "Reorganization of the pre-existing, functional larval central nervous system into one that can serve the novel behavioral needs of the adult."
* Added definition dbxref GOC:sensu to GO:0035193
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1799499
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 10b0616
* Deleted positive regulation of enzyme activity (GO:0043085) from positive regulation of biological process (GO:0048518) with OBO_REL:is_a
* Deleted negative regulation of enzyme activity (GO:0043086) from negative regulation of biological process (GO:0048519) with OBO_REL:is_a
* org.geneontology.oboedit.datamodel.history.DestroyObjectHistoryItem at bcb6e4
* org.geneontology.oboedit.datamodel.history.DestroyObjectHistoryItem at 18b624c
* added secondary id GO:0048051 to GO:0048050
* Added definition dbxref GOC:sensu to GO:0048050
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1e2a1b6
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1e6d377
* org.geneontology.oboedit.datamodel.history.DestroyObjectHistoryItem at 1455ff2
* Changed name of GO:0048803 from "male genitalia morphogenesis (sensu Endopterygota)" to "imaginal disc-derived male genitalia morphogenesis"
* Changed definition from "The process by which the anatomical structures of male genitalia are generated and organized. Morphogenesis pertains to the creation of form. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." to "The process by which the anatomical structures of male genitalia are generated and organized from the genital imaginal disc. Morphogenesis pertains to the creation of form."
* Added definition dbxref GOC:sensu to GO:0048803
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 19e2223
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at d3497c
* Changed name of GO:0048804 from "female genitalia morphogenesis (sensu Endopterygota)" to "imaginal disc-derived female genitalia morphogenesis"
* Changed definition from "The process by which the anatomical structures of female genitalia are generated and organized. Morphogenesis pertains to the creation of form. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." to "The process by which the anatomical structures of female genitalia are generated and organized from the genital disc. Morphogenesis pertains to the creation of form."
* Added definition dbxref GOC:sensu to GO:0048804
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 17da7cf
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 9435f6
* Changed name of GO:0048805 from "genitalia morphogenesis (sensu Endopterygota)" to "imaginal disc-derived genitalia morphogenesis"
* Changed definition from "The process by which the anatomical structures of genitalia are generated and organized. Morphogenesis pertains to the creation of form. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." to "The process by which the anatomical structures of genitalia are generated and organized from the genital imaginal disc. Morphogenesis pertains to the creation of form."
* Added definition dbxref GOC:sensu to GO:0048805
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 62b50e
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 5cd984
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1cc9461


From gocvs at genome.Stanford.EDU  Sat Apr  7 21:31:08 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Sat, 7 Apr 2007 21:31:08 -0700 (PDT)
Subject: GO update 04/07/2007
Message-ID: <200704080431.VAA26275@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.273 by 5.274

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created new object GO:0033149 (macro)
  * Created object GO:0033149 of type obo:TERM.
  * Changed name of GO:0033149 from "<new term>" to "FFAT motif binding"
  * Added definition "Interacting selectively with the FFAT motif, a short motif containing diphenylalanine in an acidic tract that targets proteins to the cytosolic surface of the ER and to the nuclear membrane by binding directly to members of the VAP (VAMP-associated protein) protein family."
  * Added definition dbxref PMID:12727870 to GO:0033149
  * Added definition dbxref PMID:15455074 to GO:0033149
  * Added definition dbxref PMID:16004875 to GO:0033149
  * Copied FFAT motif binding (GO:0033149) (as OBO_REL:is_a), to protein domain specific binding (GO:0019904)
  * Changed namespace of GO:0033149 from "null" to "molecular_function"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1d9e914
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1552b41
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 8ac358
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1ecbd0
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1d6d31c
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at bde8b9
* Deleted chromoplast envelope (GO:0031898) from chromoplast (GO:0009509) with OBO_REL:is_a
* Copied chromoplast envelope (GO:0031898) (as part_of), to chromoplast (GO:0009509)
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1f9f62c


From gocvs at genome.Stanford.EDU  Tue Apr 10 21:31:07 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Tue, 10 Apr 2007 21:31:07 -0700 (PDT)
Subject: GO update 04/10/2007
Message-ID: <200704110431.VAA18981@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.274 by 5.277

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created new object GO:0010385 (macro)
  * Created object GO:0010385 of type obo:TERM.
  * Changed name of GO:0010385 from "<new term>" to "double-stranded methylated DNA binding"
  * Added definition "Interacting selectively with double-stranded methylated DNA. Cytosine methylation in DNA is an important mechanism for establishing stable heritable epigenetic marks."
  * Added definition dbxref PMID:17242155 to GO:0010385
  * Copied double-stranded methylated DNA binding (GO:0010385) (as OBO_REL:is_a), to double-stranded DNA binding (GO:0003690)
  * Changed namespace of GO:0010385 from "null" to "molecular_function"
* Created new object GO:0010386 (macro)
  * Created object GO:0010386 of type obo:TERM.
  * Changed name of GO:0010386 from "<new term>" to "lateral root primordium development"
  * Added definition "The process whose specific outcome is the progression of the lateral root primordium over time, which initiates the formation to the mature structure. A lateral root primordium represents an organized group of cells derived from the root pericycle that will differentiate into a new root, as opposed to the initiation of the main root from the embryo proper."
  * Added definition dbxref PMID:17259263 to GO:0010386
  * Copied lateral root primordium development (GO:0010386) (as OBO_REL:is_a), to lateral root development (GO:0048527)
  * Changed namespace of GO:0010386 from "null" to "biological_process"
* Created new object GO:0010387 (macro)
  * Created object GO:0010387 of type obo:TERM.
  * Changed name of GO:0010387 from "<new term>" to "signalosome assembly"
  * Added definition "The aggregation and bonding together of a set of components to form a signalosome complex."
  * Added definition dbxref PMID:17307927 to GO:0010387
  * Copied signalosome assembly (GO:0010387) (as OBO_REL:is_a), to protein complex assembly (GO:0006461)
  * Changed namespace of GO:0010387 from "null" to "biological_process"
* Created new object GO:0010388 (macro)
  * Created object GO:0010388 of type obo:TERM.
  * Changed name of GO:0010388 from "<new term>" to "cullin deneddylation"
  * Added definition "The modification of cullins by removal of ubiquitin-like protein NEDD8 (RUB1)."
  * Added definition dbxref PMID:17307927 to GO:0010388
  * Copied cullin deneddylation (GO:0010388) (as OBO_REL:is_a), to protein deneddylation (GO:0000338)
  * Changed namespace of GO:0010388 from "null" to "biological_process"
* Created new object GO:0010389 (macro)
  * Created object GO:0010389 of type obo:TERM.
  * Changed name of GO:0010389 from "<new term>" to "regulation of G2/M transition of mitotic cell cycle"
  * Added definition "Any process that modulates the rate or extent of progression from G2 phase to M phase of the mitotic cell cycle."
  * Added definition dbxref PMID:17329565 to GO:0010389
  * Copied regulation of G2/M transition of mitotic cell cycle (GO:0010389) (as part_of), to G2/M transition of mitotic cell cycle (GO:0000086)
  * Copied regulation of G2/M transition of mitotic cell cycle (GO:0010389) (as OBO_REL:is_a), to regulation of progression through mitotic cell cycle (GO:0007346)
  * Changed namespace of GO:0010389 from "null" to "biological_process"
* Created new object GO:0010390 (macro)
  * Created object GO:0010390 of type obo:TERM.
  * Changed name of GO:0010390 from "<new term>" to "histone monoubiquitination"
  * Added definition "The modification of histones by addition of a single ubiquitin moiety."
  * Added definition dbxref PMID:17329563 to GO:0010390
  * Copied histone monoubiquitination (GO:0010390) (as OBO_REL:is_a), to protein monoubiquitination (GO:0006513)
  * Copied histone monoubiquitination (GO:0010390) (as OBO_REL:is_a), to histone ubiquitination (GO:0016574)
  * Changed namespace of GO:0010390 from "null" to "biological_process"
* Created new object GO:0043707 (macro)
  * Created object GO:0043707 of type obo:TERM.
  * Changed name of GO:0043707 from "<new term>" to "cell adhesion during single-species biofilm formation in or on host organism"
  * Added definition "The attachment of a cell to either a host cell or a microbial cell of the same species, or to an underlying host substrate, such as the extracellular matrix, via cell adhesion molecules, occurring during the formation of a biofilm in or on a surface in a host species."
  * Added definition dbxref GOC:jl to GO:0043707
  * Copied cell adhesion during single-species biofilm formation in or on host organism (GO:0043707) (as OBO_REL:is_a), to cell adhesion during single-species biofilm formation (GO:0043709)
  * Copied cell adhesion during single-species biofilm formation in or on host organism (GO:0043707) (as part_of), to single-species biofilm formation in or on host organism (GO:0044407)
  * Changed namespace of GO:0043707 from "null" to "biological_process"
* Created new object GO:0043708 (macro)
  * Created object GO:0043708 of type obo:TERM.
  * Changed name of GO:0043708 from "<new term>" to "cell adhesion during biofilm formation"
  * Added definition "The attachment of a cell to a surface, via cell adhesion molecules, during the formation of a biofilm."
  * Added definition dbxref GOC:jl to GO:0043708
  * Copied cell adhesion during biofilm formation (GO:0043708) (as OBO_REL:is_a), to cell adhesion (GO:0007155)
  * Copied cell adhesion during biofilm formation (GO:0043708) (as part_of), to biofilm formation (GO:0042710)
  * Changed namespace of GO:0043708 from "null" to "biological_process"
* Created new object GO:0043709 (macro)
  * Created object GO:0043709 of type obo:TERM.
  * Changed name of GO:0043709 from "<new term>" to "cell adhesion during single-species biofilm formation"
  * Added definition "The attachment of a cell to a surface, via cell adhesion molecules, during the formation of a biofilm composed of microorganisms of the same species."
  * Added definition dbxref GOC:jl to GO:0043709
  * Copied cell adhesion during single-species biofilm formation (GO:0043709) (as OBO_REL:is_a), to cell adhesion during biofilm formation (GO:0043708)
  * Copied cell adhesion during single-species biofilm formation (GO:0043709) (as part_of), to single-species biofilm formation (GO:0044010)
  * Changed namespace of GO:0043709 from "null" to "biological_process"
* Created new object GO:0043710 (macro)
  * Created object GO:0043710 of type obo:TERM.
  * Changed name of GO:0043710 from "<new term>" to "cell adhesion during multi-species biofilm formation"
  * Added definition "The attachment of a cell to a surface, via cell adhesion molecules, during the formation of a biofilm composed of microorganisms of different species."
  * Added definition dbxref GOC:jl to GO:0043710
  * Copied cell adhesion during multi-species biofilm formation (GO:0043710) (as part_of), to multi-species biofilm formation (GO:0044399)
  * Copied cell adhesion during multi-species biofilm formation (GO:0043710) (as OBO_REL:is_a), to cell adhesion during biofilm formation (GO:0043708)
  * Changed namespace of GO:0043710 from "null" to "biological_process"
* Deleted cell killing (GO:0001906) from cell death (GO:0008219) with OBO_REL:is_a
* Copied cell killing (GO:0001906) (as OBO_REL:is_a), to biological_process (GO:0008150)
* Changed name of GO:0002812 from "biosynthetic process of antibacterial peptides active against anti-Gram-negative bacteria" to "biosynthetic process of antibacterial peptides active against Gram-negative bacteria"
* Changed name of GO:0002813 from "regulation of biosynthetic process of antibacterial peptides active against anti-Gram-negative bacteria" to "regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria"
* Changed definition from "Any process that modulates the frequency, rate, or extent of biosynthesis of antibacterial peptides active against anti-Gram-negative bacteria." to "Any process that modulates the frequency, rate, or extent of biosynthesis of antibacterial peptides active against Gram-negative bacteria."
* Changed name of GO:0002814 from "negative regulation of biosynthetic process of antibacterial peptides active against anti-Gram-negative bacteria" to "negative regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria"
* Changed definition from "Any process that stops, prevents, or reduces the frequency, rate, or extent of biosynthesis of antibacterial peptides active against anti-Gram-negative bacteria." to "Any process that stops, prevents, or reduces the frequency, rate, or extent of biosynthesis of antibacterial peptides active against Gram-negative bacteria."
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 43be48
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1819e72
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at c96ad6
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1851764
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at c2c3bc
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at c09510
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 17a5f43
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 10430ab
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 17689f
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at d59fcb
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at edf0dc
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1601188
* Changed name of GO:0002815 from "biosynthetic process of antibacterial peptides active against anti-Gram-positive bacteria" to "biosynthetic process of antibacterial peptides active against Gram-positive bacteria"
* Changed name of GO:0002816 from "regulation of biosynthetic process of antibacterial peptides active against anti-Gram-positive bacteria" to "regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria"
* Changed definition from "Any process that modulates the frequency, rate, or extent of biosynthesis of antibacterial peptides active against anti-Gram-positive bacteria." to "Any process that modulates the frequency, rate, or extent of biosynthesis of antibacterial peptides active against Gram-positive bacteria."
* Changed name of GO:0002817 from "negative regulation of biosynthetic process of antibacterial peptides active against anti-Gram-positive bacteria" to "negative regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria"
* Changed definition from "Any process that stops, prevents, or reduces the frequency, rate, or extent of biosynthesis of antibacterial peptides active against anti-Gram-positive bacteria." to "Any process that stops, prevents, or reduces the frequency, rate, or extent of biosynthesis of antibacterial peptides active against Gram-positive bacteria."
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1f2eca
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1390948
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1905dc6
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at fca84f
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 18ddd17
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at ae461e
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 17d6526
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 17bdaf9
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 651a66
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1a84ce7
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 50e3fa
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at a772df
* Deleted generation of precursor metabolites and energy (GO:0006091) from cellular metabolic process (GO:0044237) with OBO_REL:is_a
* Copied generation of precursor metabolites and energy (GO:0006091) (as OBO_REL:is_a), to metabolic process (GO:0008152)
* Changed name of GO:0006964 from "positive regulation of biosynthetic process of antibacterial peptides active against anti-Gram-negative bacteria" to "positive regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria"
* Changed definition from "Any process that activates or increases the frequency, rate, or extent of biosynthesis of antibacterial peptides active against anti-Gram-negative bacteria." to "Any process that activates or increases the frequency, rate, or extent of biosynthesis of antibacterial peptides active against Gram-negative bacteria."
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 166c841
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at e5241f
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1a670b5
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 318420
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at d974e0
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 884dbf
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at a85bcc
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 122e5cf
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1d8a07
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1511033
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at fe9976
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 10d1697
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 461511
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1113843
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 184cbc5
* Changed name of GO:0006965 from "positive regulation of biosynthetic process of antibacterial peptides active against anti-Gram-positive bacteria" to "positive regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria"
* Changed definition from "Any process that activates or increases the frequency, rate, or extent of biosynthesis of antibacterial peptides active against anti-Gram-positive bacteria." to "Any process that activates or increases the frequency, rate, or extent of biosynthesis of antibacterial peptides active against Gram-positive bacteria."
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 15e07ce
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 528d10
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1ab42bd
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at aa9061
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1ecf9a6
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at fa39ab
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1e03b4a
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 549e30
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 15d99e6
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 23073c
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1b01f4b
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1d699b1
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 472fb
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 18e0a6
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 144da58
* Deleted macromolecule biosynthetic process (GO:0009059) from cellular biosynthetic process (GO:0044249) with OBO_REL:is_a
* Copied macromolecule biosynthetic process (GO:0009059) (as OBO_REL:is_a), to biosynthetic process (GO:0009058)
* Deleted carbohydrate biosynthetic process (GO:0016051) from cellular carbohydrate metabolic process (GO:0044262) with OBO_REL:is_a
* Copied carbohydrate biosynthetic process (GO:0016051) (as OBO_REL:is_a), to carbohydrate metabolic process (GO:0005975)
* Deleted biofilm formation (GO:0042710) from cell adhesion (GO:0007155) with OBO_REL:is_a
* Changed name of GO:0044240 from "organismal lipid catabolic process" to "multicellular organismal lipid catabolic process"
* Changed name of GO:0044243 from "organismal catabolic process" to "multicellular organismal catabolic process"
* Changed name of GO:0044244 from "organismal polysaccharide catabolic process" to "multicellular organismal polysaccharide catabolic process"
* Changed name of GO:0044252 from "negative regulation of organismal metabolic process" to "negative regulation of multicellular organismal metabolic process"
* Changed name of GO:0044253 from "positive regulation of organismal metabolic process" to "positive regulation of multicellular organismal metabolic process"
* Changed name of GO:0044254 from "organismal protein catabolic process" to "multicellular organismal protein catabolic process"
* Changed name of GO:0044259 from "organismal macromolecule metabolic process" to "multicellular organismal macromolecule metabolic process"
* Changed name of GO:0044261 from "organismal carbohydrate metabolic process" to "multicellular organismal carbohydrate metabolic process"
* Changed name of GO:0044263 from "organismal polysaccharide metabolic process" to "multicellular organismal polysaccharide metabolic process"
* Changed name of GO:0044266 from "organismal macromolecule catabolic process" to "multicellular organismal macromolecule catabolic process"
* Changed name of GO:0044268 from "organismal protein metabolic process" to "multicellular organismal protein metabolic process"
* Changed name of GO:0044274 from "organismal biosynthetic process" to "multicellular organismal biosynthetic process"
* Changed name of GO:0044276 from "organismal carbohydrate catabolic process" to "multicellular organismal carbohydrate catabolic process"
* Deleted interleukin-1 beta biosynthetic process (GO:0050720) from interleukin-1 beta production (GO:0032611) with OBO_REL:is_a
* Copied interleukin-1 beta biosynthetic process (GO:0050720) (as part_of), to interleukin-1 beta production (GO:0032611)
* Changed name of GO:0050879 from "organismal movement" to "multicellular organismal movement"
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 15ae9e8
* Deleted positive regulation of binding (GO:0051099) from positive regulation of biological process (GO:0048518) with OBO_REL:is_a
* Deleted negative regulation of binding (GO:0051100) from negative regulation of biological process (GO:0048519) with OBO_REL:is_a
* Changed name of GO:0051689 from "organismal oligosaccharide catabolic process" to "multicellular organismal oligosaccharide catabolic process"
* Changed name of GO:0051690 from "organismal oligosaccharide metabolic process" to "multicellular organismal oligosaccharide metabolic process"


From gocvs at genome.Stanford.EDU  Wed Apr 11 21:31:06 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Wed, 11 Apr 2007 21:31:06 -0700 (PDT)
Subject: GO update 04/11/2007
Message-ID: <200704120431.VAA17052@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.277 by 5.279

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created new object GO:0033150 (macro)
  * Created object GO:0033150 of type obo:TERM.
  * Changed name of GO:0033150 from "<new term>" to "cytoskeletal calyx"
  * Added definition "A large cytoskeletal structure located at the posterior end of the perinuclear theca of a mammalian sperm head. The nucleus is tightly associated with the calyx, which contains calicin and basic cylicin proteins."
  * Added definition dbxref PMID:12243744 to GO:0033150
  * Added definition dbxref PMID:9184090 to GO:0033150
  * Copied cytoskeletal calyx (GO:0033150) (as OBO_REL:is_a), to cytoskeletal part (GO:0044430)
  * Copied cytoskeletal calyx (GO:0033150) (as part_of), to perinuclear theca (GO:0033011)
  * Changed namespace of GO:0033150 from "null" to "cellular_component"
* Created new object GO:0033151 (macro)
  * Created object GO:0033151 of type obo:TERM.
  * Changed name of GO:0033151 from "<new term>" to "V(D)J recombination"
  * Added definition "The process by which immune receptor V, D, and J, or V and J gene segments, depending on the specific receptor, are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS)."
  * Added definition dbxref ISBN:0781700221 to GO:0033151
  * Added definition dbxref ISBN:0781735149 to GO:0033151
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at fa39ab
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1e03b4a
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 549e30
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 15d99e6
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 23073c
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1b01f4b
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1d699b1
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 472fb
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 18e0a6
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 144da58
  * Copied V(D)J recombination (GO:0033151) (as OBO_REL:is_a), to somatic diversification of immune receptors via germline recombination within a single locus (GO:0002562)
  * Changed namespace of GO:0033151 from "null" to "biological_process"
* Created new object GO:0033152 (macro)
  * Created object GO:0033152 of type obo:TERM.
  * Changed name of GO:0033152 from "<new term>" to "immunoglobulin V(D)J recombination"
  * Added definition "The process by which immunoglobulin heavy chain V, D, and J gene segments are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS). For immunoglobulin light chains the same process is used to join V and J gene segments directly."
  * Added definition dbxref ISBN:0781735149 to GO:0033152
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 15ae9e8
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1b2ae39
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1cc5fa1
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 9a4b21
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1ba7d7b
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 842eb7
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 17303e
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 605c72
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 555d48
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 5f41f0
  * Copied immunoglobulin V(D)J recombination (GO:0033152) (as OBO_REL:is_a), to somatic recombination of immunoglobulin gene segments (GO:0016447)
  * Copied immunoglobulin V(D)J recombination (GO:0033152) (as OBO_REL:is_a), to V(D)J recombination (GO:0033151)
  * Changed namespace of GO:0033152 from "null" to "biological_process"
* Created new object GO:0033153 (macro)
  * Created object GO:0033153 of type obo:TERM.
  * Changed name of GO:0033153 from "<new term>" to "T cell receptor V(D)J recombination"
  * Added definition "The process by which T cell receptor V, D, and J, or V and J gene segments, depending on the specific locus, are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS)."
  * Added definition dbxref ISBN:0781700221 to GO:0033153
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1e21fdd
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 99ea36
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at df86b7
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1056629
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1763333
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 11b5a04
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at b2f9b3
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 276997
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1856ad9
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 29d171
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1755d15
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 3217ad
  * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at b09f95
  * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1bcf4ae
  * Copied T cell receptor V(D)J recombination (GO:0033153) (as OBO_REL:is_a), to V(D)J recombination (GO:0033151)
  * Copied T cell receptor V(D)J recombination (GO:0033153) (as OBO_REL:is_a), to somatic recombination of T cell receptor gene segments (GO:0002681)
  * Changed namespace of GO:0033153 from "null" to "biological_process"
* Created new object GO:0055047 (macro)
  * Created object GO:0055047 of type obo:TERM.
  * Changed name of GO:0055047 from "<new term>" to "generative cell mitosis"
  * Added definition "The process whereby the generative cell divides by mitosis to form two haploid cells. These will subsequently differentiate into sperm cells."
  * Added definition dbxref GOC:mtg_plant to GO:0055047
  * Copied generative cell mitosis (GO:0055047) (as part_of), to pollination (GO:0009856)
  * Copied generative cell mitosis (GO:0055047) (as OBO_REL:is_a), to mitosis (GO:0007067)
  * Copied generative cell mitosis (GO:0055047) (as part_of), to male gamete generation (GO:0048232)
  * Changed namespace of GO:0055047 from "null" to "biological_process"
* Changed name of GO:0000131 from "incipient bud site" to "incipient cellular bud site"
* Changed name of GO:0000142 from "bud neck contractile ring" to "cellular bud neck contractile ring"
* Changed name of GO:0000144 from "bud neck septin ring" to "cellular bud neck septin ring"
* Changed name of GO:0000282 from "bud site selection" to "cellular bud site selection"
* Changed name of GO:0000399 from "bud neck septin structure" to "cellular bud neck septin structure"
* Changed name of GO:0005621 from "bud scar" to "cellular bud scar"
* Changed name of GO:0005933 from "bud" to "cellular bud"
* Changed definition from "A daughter cell of an organism that reproduces by budding; formed by pinching off part of the parent cell." to "A protuberance from a cell of an organism that reproduces by budding, which will grow larger and become a separate daughter cell after nuclear division, cytokinesis, and cell wall formation (when appropriate). The daughter cell may completely separate from the mother cell, or the mother and daughter cells may remain associated."
* org.geneontology.oboedit.datamodel.history.DelDbxrefHistoryItem at 63f56e
* Added definition dbxref GOC:sgd_curators to GO:0005933
* Changed name of GO:0005934 from "bud tip" to "cellular bud tip"
* Changed definition from "The end of a bud distal to the site of attachment to the mother cell." to "The end of a cellular bud distal to the site of attachment to the mother cell."
* Changed name of GO:0005935 from "bud neck" to "cellular bud neck"
* Changed name of GO:0007120 from "axial bud site selection" to "axial cellular bud site selection"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 862ff0
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1b55187
* Changed name of GO:0007121 from "bipolar bud site selection" to "bipolar cellular bud site selection"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at fb8861
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1b6c3dd
* Deleted response to gamma radiation (GO:0010332) from response to radiation (GO:0009314) with OBO_REL:is_a
* Copied response to gamma radiation (GO:0010332) (as OBO_REL:is_a), to response to ionizing radiation (GO:0010212)
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1f50a07
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 655ee1
* Changed name of GO:0031560 from "bud neck polarisome" to "cellular bud neck polarisome"
* Changed name of GO:0031561 from "bud tip polarisome" to "cellular bud tip polarisome"
* Changed name of GO:0032174 from "bud neck septin collar" to "cellular bud neck septin collar"
* Changed name of GO:0032177 from "bud neck split septin rings" to "cellular bud neck split septin rings"
* Changed name of GO:0032186 from "bud neck septin ring organization" to "cellular bud neck septin ring organization"
* Changed name of GO:0033101 from "bud membrane" to "cellular bud membrane"
* Changed definition from "The portion of the plasma membrane surrounding a bud." to "The portion of the plasma membrane surrounding a cellular bud."
* org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1381978
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 103ad6
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 186b8a8
* Changed name of GO:0048235 from "male gametophyte sperm cell differentiation" to "pollen sperm cell differentiation"
* org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c55ae6
* org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1d2c983
* Deleted pollen sperm cell differentiation (GO:0048235) from pollen development (GO:0009555) with part_of
* Deleted pol