[go-diff] GO update 08/06/2007

Remote CVS for Gene Ontology gocvs at genome.Stanford.EDU
Mon Aug 6 21:30:39 PDT 2007 

OBODIFF of gene_ontology_edit.obo version 5.441 by 5.442

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0033584
* Created object of type obo:TERM with id GO:0033585
* Created object of type obo:TERM with id GO:0033586
* Populated new object GO:0033584 (macro)
  * Changed name of GO:0033584 from "<new term>" to "tyrosine biosynthetic process from chorismate via L-arogenate"
  * Set definition of GO:0033584 to "The chemical reactions and pathways resulting in the formation of tyrosine from other compounds, including chorismate, via the intermediate L-arogenate."
  * Added definition dbxref GOC:mah to GO:0033584
  * Added definition dbxref MetaCyc:PWY-3461 to GO:0033584
  * Added general dbxref MetaCyc:PWY-3461 to GO:0033584
  * Added GO:0033584 to category gosubset_prok
  * Added synonym "tyrosine anabolism from chorismate via L-arogenate" to GO:0033584
  * Changed synonym scope of GO:0033584 from "Related" to "Exact"
  * Added synonym "tyrosine formation from chorismate via L-arogenate" to GO:0033584
  * Changed synonym scope of GO:0033584 from "Related" to "Exact"
  * Added synonym "tyrosine synthesis from chorismate via L-arogenate" to GO:0033584
  * Changed synonym scope of GO:0033584 from "Related" to "Exact"
  * Copied GO:0033584 to GO:0006571 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033584
* Populated new object GO:0033585 (macro)
  * Changed name of GO:0033585 from "<new term>" to "L-phenylalanine biosynthetic process from chorismate via phenylpyruvate"
  * Set definition of GO:0033585 to "The chemical reactions and pathways resulting in the formation of L-phenylalanine from other compounds, including chorismate, via the intermediate phenylpyruvate."
  * Added definition dbxref GOC:go_curators to GO:0033585
  * Added general dbxref MetaCyc:PHESYN to GO:0033585
  * Added GO:0033585 to category gosubset_prok
  * Added synonym "L-phenylalanine anabolism from chorismate via phenylpyruvate" to GO:0033585
  * Changed synonym scope of GO:0033585 from "Related" to "Exact"
  * Added synonym "L-phenylalanine biosynthetic process from chorismate via phenylpyruvate" to GO:0033585
  * Changed synonym scope of GO:0033585 from "Related" to "Exact"
  * Added synonym "L-phenylalanine formation from chorismate via phenylpyruvate" to GO:0033585
  * Changed synonym scope of GO:0033585 from "Related" to "Exact"
  * Added synonym "L-phenylalanine synthesis from chorismate via phenylpyruvate" to GO:0033585
  * Changed synonym scope of GO:0033585 from "Related" to "Exact"
  * Copied GO:0033585 to GO:0009094 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033585
* Populated new object GO:0033586 (macro)
  * Changed name of GO:0033586 from "<new term>" to "L-phenylalanine biosynthetic process from chorismate via L-arogenate"
  * Set definition of GO:0033586 to "The chemical reactions and pathways resulting in the formation of L-phenylalanine from other compounds, including chorismate, via the intermediate L-arogenate."
  * Added definition dbxref GOC:go_curators to GO:0033586
  * Added general dbxref MetaCyc:PWY-3462 to GO:0033586
  * Added GO:0033586 to category gosubset_prok
  * Added synonym "L-phenylalanine anabolism from chorismate via L-arogenate" to GO:0033586
  * Changed synonym scope of GO:0033586 from "Related" to "Exact"
  * Added synonym "L-phenylalanine biosynthesis from chorismate via L-arogenate" to GO:0033586
  * Changed synonym scope of GO:0033586 from "Related" to "Exact"
  * Added synonym "L-phenylalanine formation from chorismate via L-arogenate" to GO:0033586
  * Changed synonym scope of GO:0033586 from "Related" to "Exact"
  * Added synonym "L-phenylalanine synthesis from chorismate via L-arogenate" to GO:0033586
  * Changed synonym scope of GO:0033586 from "Related" to "Exact"
  * Copied GO:0033586 to GO:0009094 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033586
* added secondary id GO:0009096 to GO:0000162
* Changed definition of GO:0000162 from "The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid." to "The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate."
* Deleted definition dbxref ISBN:0198547684 from GO:0000162
* Added definition dbxref GOC:mah to GO:0000162
* Added definition dbxref Biochemical Pathways (ISBN:0471331309) to GO:0000162
* Added definition dbxref MetaCyc:TRPSYN-PWY to GO:0000162
* Added synonym "aromatic amino acid family biosynthetic process, anthranilate pathway" to GO:0000162
* Changed synonym scope of GO:0000162 from "Related" to "Exact"
* Deleted GO:0000162 --OBO_REL:is_a--> GO:0009096
* Copied GO:0000162 to GO:0009073 with type OBO_REL:is_a
* Deleted GO:0006571 --OBO_REL:is_a--> GO:0009423
* Copied GO:0006571 to GO:0009073 with type OBO_REL:is_a
* added secondary id GO:0016089 to GO:0009073
* Deleted general dbxref MetaCyc:COMPLETE-ARO from GO:0009073
* Added general dbxref MetaCyc:COMPLETE-ARO-PWY to GO:0009073
* Added synonym "aromatic amino acid family biosynthetic process, shikimate pathway" to GO:0009073
* added secondary id GO:0019274 to GO:0009094
* added secondary id GO:0019275 to GO:0009094
* Deleted general dbxref MetaCyc:COMPLETE-ARO from GO:0009094
* Added synonym "phenylalanine biosynthetic process, prephenate pathway" to GO:0009094
* Added synonym "phenylalanine biosynthetic process, shikimate pathway" to GO:0009094
* Changed definition of GO:0009095 from "The pathway of phenylalanine and tyrosine biosynthesis from chorismate, utilizing prephenate as an intermediate." to "The chemical reactions and pathways resulting in the formation of phenylalanine and tyrosine from other compounds, including chorismate, via the intermediate prephenate."
* Deleted definition dbxref ISBN:0198547684 from GO:0009095
* Added definition dbxref GOC:mah to GO:0009095
* Added definition dbxref Biochemical Pathways (ISBN:0471331309) to GO:0009095
* Deleted GO:0009096 --OBO_REL:is_a--> GO:0009073
* Deleted GO:0000162 --OBO_REL:is_a--> GO:0009096
* Destroyed object GO:0009096
* Deleted GO:0009423 --OBO_REL:is_a--> GO:0009095
* Deleted GO:0009423 --OBO_REL:is_a--> GO:0016089
* Deleted GO:0009423 --OBO_REL:is_a--> GO:0046394
* Copied GO:0009423 to GO:0043650 with type OBO_REL:is_a
* Deleted GO:0016089 --part_of--> GO:0009698
* Deleted GO:0016089 --OBO_REL:is_a--> GO:0009073
* Deleted GO:0009423 --OBO_REL:is_a--> GO:0016089
* Deleted GO:0019540 --OBO_REL:is_a--> GO:0016089
* Destroyed object GO:0016089
* Deleted GO:0019274 --OBO_REL:is_a--> GO:0009094
* Deleted GO:0019274 --OBO_REL:is_a--> GO:0009095
* Destroyed object GO:0019274
* Deleted GO:0019275 --OBO_REL:is_a--> GO:0009094
* Deleted GO:0019275 --OBO_REL:is_a--> GO:0009423
* Destroyed object GO:0019275
* Deleted GO:0019291 --OBO_REL:is_a--> GO:0006558
* Deleted GO:0019291 --OBO_REL:is_a--> GO:0006571
* Destroyed object GO:0019291
* Added synonym "tyrosine biosynthetic process from chorismate via p-hydroxyphenylpyruvate" to GO:0019292
* Changed synonym scope of GO:0019292 from "Related" to "Exact"
* added secondary id GO:0019291 to GO:0019293
* Deleted general dbxref MetaCyc:TYRSYN2 from GO:0019293
* Added synonym "tyrosine anabolism from chorismate via L-phenylalanine" to GO:0019293
* Changed synonym scope of GO:0019293 from "Related" to "Exact"
* Added synonym "tyrosine biosynthetic process from chorismate via L-phenylalanine" to GO:0019293
* Changed synonym scope of GO:0019293 from "Related" to "Exact"
* Added synonym "tyrosine formation from chorismate via L-phenylalanine" to GO:0019293
* Changed synonym scope of GO:0019293 from "Related" to "Exact"
* Added synonym "tyrosine synthesis from chorismate via L-phenylalanine" to GO:0019293
* Changed synonym scope of GO:0019293 from "Related" to "Exact"
* Copied GO:0019293 to GO:0006558 with type OBO_REL:is_a
* Deleted GO:0019540 --OBO_REL:is_a--> GO:0016089
* Deleted GO:0043650 --OBO_REL:is_a--> GO:0016053
* Copied GO:0043650 to GO:0046394 with type OBO_REL:is_a

More information about the Go-diff mailing list