[go-diff] GO update 08/07/2007

Tue Aug 7 21:30:39 PDT 2007

OBODIFF of gene_ontology_edit.obo version 5.442 by 5.444

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0033587
* Populated new object GO:0033587 (macro)
  * Changed name of GO:0033587 from "<new term>" to "shikimate biosynthetic process"
  * Set definition of GO:0033587 to "The chemical reactions and pathways resulting in the breakdown of shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid."
  * Added definition dbxref ChEBI:36208 to GO:0033587
  * Added definition dbxref GOC:mah to GO:0033587
  * Added synonym "shikimate anabolism" to GO:0033587
  * Changed synonym scope of GO:0033587 from "Related" to "Exact"
  * Added synonym "shikimate biosynthesis" to GO:0033587
  * Changed synonym scope of GO:0033587 from "Related" to "Exact"
  * Added synonym "shikimate formation" to GO:0033587
  * Changed synonym scope of GO:0033587 from "Related" to "Exact"
  * Added synonym "shikimate synthesis" to GO:0033587
  * Changed synonym scope of GO:0033587 from "Related" to "Exact"
  * Copied GO:0033587 to GO:0019632 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033587
* Deleted GO:0006571 --OBO_REL:is_a--> GO:0009073
* Copied GO:0006571 to GO:0009095 with type OBO_REL:is_a
* added secondary id GO:0043361 to GO:0007403
* Changed definition of GO:0007403 from "Process by which a cell becomes capable of differentiating autonomously into a glial cell regardless of its environment; upon determination, the cell fate cannot be reversed." to "MERGED DEFINITION:
TARGET DEFINITION: Process by which a cell becomes capable of differentiating autonomously into a glial cell regardless of its environment; upon determination, the cell fate cannot be reversed.
--------------------
SOURCE DEFINITION: Process by which a cell becomes capable of differentiating autonomously into a glial cell regardless of its environment; upon determination, the cell fate cannot be reversed. As in, but not restricted to, the roundworms (Nematoda, ncbi_taxonomy_id:6231) and the taxon Protostomia (Protostomia, ncbi_taxonomy_id:33317)."
* Added synonym "glial cell fate determination (sensu Nematoda and Protostomia)" to GO:0007403
* Changed synonym scope of GO:0007403 from "Related" to "Exact"
* added secondary id GO:0043349 to GO:0007405
* added secondary id GO:0043350 to GO:0007405
* Added definition dbxref GOC:mtg_sensu to GO:0007405
* Added synonym "neuroblast proliferation (sensu Nematoda and Protostomia)" to GO:0007405
* Changed synonym scope of GO:0007405 from "Related" to "Exact"
* Added synonym "neuroblast proliferation (sensu Vertebrata)" to GO:0007405
* Changed synonym scope of GO:0007405 from "Related" to "Exact"
* added secondary id GO:0043351 to GO:0007407
* added secondary id GO:0043352 to GO:0007407
* Added definition dbxref GOC:mtg_sensu to GO:0007407
* Added synonym "neuroblast activation (sensu Nematoda and Protostomia)" to GO:0007407
* Changed synonym scope of GO:0007407 from "Related" to "Exact"
* Added synonym "neuroblast activation (sensu Vertebrata)" to GO:0007407
* Changed synonym scope of GO:0007407 from "Related" to "Exact"
* added secondary id GO:0043359 to GO:0008347
* Added definition dbxref GOC:mtg_sensu to GO:0008347
* Added synonym "glial cell migration (sensu Nematoda and Protostomia)" to GO:0008347
* Changed synonym scope of GO:0008347 from "Related" to "Exact"
* Copied GO:0009073 to GO:0046417 with type OBO_REL:is_a
* Deleted GO:0009094 --OBO_REL:is_a--> GO:0009073
* Copied GO:0009094 to GO:0009095 with type OBO_REL:is_a
* Added general dbxref MetaCyc:PHETYRSYN-PWY to GO:0009095
* Deleted GO:0009712 --OBO_REL:is_a--> GO:0009698
* Deleted GO:0009713 --OBO_REL:is_a--> GO:0009699
* added secondary id GO:0043360 to GO:0010001
* Added definition dbxref GOC:mtg_sensu to GO:0010001
* Added synonym "glial cell differentiation (sensu Nematoda and Protostomia)" to GO:0010001
* Changed synonym scope of GO:0010001 from "Related" to "Exact"
* Deleted GO:0019614 --OBO_REL:is_a--> GO:0046271
* Changed definition of GO:0019632 from "The chemical reactions and pathways involving shikimate, the anion of shikimic acid. It is an important intermediate in the biosynthesis of aromatic amino acids." to "The chemical reactions and pathways involving shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid. It is an important intermediate in the biosynthesis of aromatic amino acids."
* Added definition dbxref ChEBI:36208 to GO:0019632
* Changed definition of GO:0019633 from "The chemical reactions and pathways resulting in the breakdown of shikimate, the anion of shikimic acid." to "The chemical reactions and pathways resulting in the breakdown of shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid."
* Added definition dbxref ChEBI:36208 to GO:0019633
* Deleted GO:0043339 --OBO_REL:is_a--> GO:0045196
* Deleted GO:0043340 --OBO_REL:is_a--> GO:0043339
* Deleted GO:0043341 --OBO_REL:is_a--> GO:0043339
* Destroyed object GO:0043339
* Deleted GO:0043340 --OBO_REL:is_a--> GO:0043339
* Deleted GO:0043340 --OBO_REL:is_a--> GO:0045200
* Destroyed object GO:0043340
* Deleted GO:0043341 --OBO_REL:is_a--> GO:0043339
* Deleted GO:0043341 --OBO_REL:is_a--> GO:0045201
* Destroyed object GO:0043341
* Deleted GO:0043342 --OBO_REL:is_a--> GO:0045196
* Deleted GO:0043343 --OBO_REL:is_a--> GO:0043342
* Deleted GO:0043344 --OBO_REL:is_a--> GO:0043342
* Destroyed object GO:0043342
* Deleted GO:0043343 --OBO_REL:is_a--> GO:0043342
* Deleted GO:0043343 --OBO_REL:is_a--> GO:0045200
* Destroyed object GO:0043343
* Deleted GO:0043344 --OBO_REL:is_a--> GO:0043342
* Deleted GO:0043344 --OBO_REL:is_a--> GO:0045201
* Destroyed object GO:0043344
* Deleted GO:0043349 --OBO_REL:is_a--> GO:0007405
* Destroyed object GO:0043349
* Deleted GO:0043350 --OBO_REL:is_a--> GO:0007405
* Destroyed object GO:0043350
* Deleted GO:0043351 --OBO_REL:is_a--> GO:0007407
* Destroyed object GO:0043351
* Deleted GO:0043352 --OBO_REL:is_a--> GO:0007407
* Destroyed object GO:0043352
* Deleted GO:0043359 --OBO_REL:is_a--> GO:0008347
* Destroyed object GO:0043359
* Deleted GO:0043360 --OBO_REL:is_a--> GO:0010001
* Destroyed object GO:0043360
* Deleted GO:0043361 --OBO_REL:is_a--> GO:0007403
* Destroyed object GO:0043361
* added secondary id GO:0043339 to GO:0045196
* added secondary id GO:0043342 to GO:0045196
* Added definition dbxref GOC:mtg_sensu to GO:0045196
* Added synonym "establishment and/or maintenance of neuroblast polarity (sensu Nematoda and Protostomia)" to GO:0045196
* Changed synonym scope of GO:0045196 from "Related" to "Exact"
* Added synonym "establishment and/or maintenance of neuroblast polarity (sensu Vertebrata)" to GO:0045196
* Changed synonym scope of GO:0045196 from "Related" to "Exact"
* added secondary id GO:0043340 to GO:0045200
* added secondary id GO:0043343 to GO:0045200
* Added definition dbxref GOC:mtg_sensu to GO:0045200
* Added synonym "establishment of neuroblast polarity (sensu Nematoda and Protostomia)" to GO:0045200
* Changed synonym scope of GO:0045200 from "Related" to "Exact"
* Added synonym "establishment of neuroblast polarity (sensu Vertebrata)" to GO:0045200
* Changed synonym scope of GO:0045200 from "Related" to "Exact"
* added secondary id GO:0043341 to GO:0045201
* added secondary id GO:0043344 to GO:0045201
* Added definition dbxref GOC:mtg_sensu to GO:0045201
* Added synonym "maintenance of neuroblast polarity (sensu Nematoda and Protostomia)" to GO:0045201
* Changed synonym scope of GO:0045201 from "Related" to "Exact"
* Added synonym "maintenance of neuroblast polarity (sensu Vertebrata)" to GO:0045201
* Changed synonym scope of GO:0045201 from "Related" to "Exact"