[go-diff] GO update 08/15/2007

Remote CVS for Gene Ontology gocvs at genome.Stanford.EDU
Wed Aug 15 21:30:39 PDT 2007 

OBODIFF of gene_ontology_edit.obo version 5.454 by 5.456

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0032517
* Created object of type obo:TERM with id GO:0032518
* Created object of type obo:TERM with id GO:0032519
* Created object of type obo:TERM with id GO:0032520
* Created object of type obo:TERM with id GO:0032521
* Created object of type obo:TERM with id GO:0032522
* Created object of type obo:TERM with id GO:0032523
* Created object of type obo:TERM with id GO:0032524
* Created object of type obo:TERM with id GO:0032525
* Created object of type obo:TERM with id GO:0032526
* Created object of type obo:TERM with id GO:0032527
* Populated new object GO:0032517 (macro)
  * Changed name of GO:0032517 from "<new term>" to "SOD1-calcineurin complex"
  * Set definition of GO:0032517 to "A protein complex formed by the association of superoxide dismutase 1 (SOD1) with calcineurin; complex formation is implicated in activation of calcineurin by SOD1."
  * Added definition dbxref GOC:mah to GO:0032517
  * Added definition dbxref PMID:17324120 to GO:0032517
  * Copied GO:0032517 to GO:0044424 with type OBO_REL:is_a
  * Copied GO:0032517 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0032517
* Populated new object GO:0032518 (macro)
  * Changed name of GO:0032518 from "<new term>" to "amino acid-exporting ATPase activity"
  * Set definition of GO:0032518 to "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + amino acid(in) = ADP + phosphate + amino acid(out)."
  * Added definition dbxref GOC:mah to GO:0032518
  * Copied GO:0032518 to GO:0015424 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0032518
* Populated new object GO:0032519 (macro)
  * Changed name of GO:0032519 from "<new term>" to "cysteine-exporting ATPase activity"
  * Set definition of GO:0032519 to "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cysteine(in) = ADP + phosphate + cysteine(out)."
  * Added definition dbxref GOC:mah to GO:0032519
  * Added synonym "cysteine exporter" to GO:0032519
  * Copied GO:0032519 to GO:0032518 with type OBO_REL:is_a
  * Copied GO:0032519 to GO:0033230 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0032519
* Populated new object GO:0032520 (macro)
  * Changed name of GO:0032520 from "<new term>" to "amino acid-importing ATPase activity"
  * Set definition of GO:0032520 to "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + amino acid(out) = ADP + phosphate + amino acid(in)."
  * Added definition dbxref GOC:mah to GO:0032520
  * Copied GO:0032520 to GO:0015424 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0032520
* Populated new object GO:0032521 (macro)
  * Changed name of GO:0032521 from "<new term>" to "D-methionine-exporting ATPase activity"
  * Set definition of GO:0032521 to "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + D-methionine(in) = ADP + phosphate + D-methionine(out)."
  * Added definition dbxref GOC:mah to GO:0032521
  * Added synonym "D-methionine exporter" to GO:0032521
  * Copied GO:0032521 to GO:0033232 with type OBO_REL:is_a
  * Copied GO:0032521 to GO:0032518 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0032521
* Populated new object GO:0032522 (macro)
  * Changed name of GO:0032522 from "<new term>" to "D-methionine-importing ATPase activity"
  * Set definition of GO:0032522 to "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + D-methionine(out) = ADP + phosphate + D-methionine(in)."
  * Added definition dbxref GOC:mah to GO:0032522
  * Added synonym "D-methionine importer" to GO:0032522
  * Copied GO:0032522 to GO:0033232 with type OBO_REL:is_a
  * Copied GO:0032522 to GO:0032520 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0032522
* Populated new object GO:0032523 (macro)
  * Changed name of GO:0032523 from "<new term>" to "silicon efflux transmembrane transporter activity"
  * Set definition of GO:0032523 to "Catalysis of the transfer of silicon from the inside of the cell to the outside of the cell across a membrane."
  * Added definition dbxref GOC:mah to GO:0032523
  * Added definition dbxref PMID:17625566 to GO:0032523
  * Added synonym "silicon efflux transporter activity" to GO:0032523
  * Changed synonym scope of GO:0032523 from "Related" to "Exact"
  * Copied GO:0032523 to GO:0015562 with type OBO_REL:is_a
  * Copied GO:0032523 to GO:0042900 with type OBO_REL:is_a
  * Copied GO:0032523 to GO:0005351 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0032523
* Populated new object GO:0032524 (macro)
  * Changed name of GO:0032524 from "<new term>" to "nutrient export"
  * Set definition of GO:0032524 to "The directed movement of nutrients out of a cell or organelle."
  * Added definition dbxref GOC:mah to GO:0032524
  * Added GO:0032524 to category gosubset_prok
  * Copied GO:0032524 to GO:0006810 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032524
* Populated new object GO:0032525 (macro)
  * Changed name of GO:0032525 from "<new term>" to "somite rostral/caudal axis specification"
  * Set definition of GO:0032525 to "The establishment, maintenance and elaboration of the rostro-caudal axis of a somite, prior to the morphological formation of a somite boundary."
  * Added definition dbxref GOC:bf to GO:0032525
  * Added definition dbxref PMID:16326386 to GO:0032525
  * Added definition dbxref PMID:17360776 to GO:0032525
  * Added synonym "somite rostrocaudal axis specification" to GO:0032525
  * Changed synonym scope of GO:0032525 from "Related" to "Exact"
  * Added synonym "somite rostrocaudal polarity" to GO:0032525
  * Copied GO:0032525 to GO:0001756 with type part_of
  * Copied GO:0032525 to GO:0009948 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032525
* Populated new object GO:0032526 (macro)
  * Changed name of GO:0032526 from "<new term>" to "response to retinoic acid"
  * Set definition of GO:0032526 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus."
  * Added definition dbxref GOC:sl to GO:0032526
  * Added synonym "response to vitamin A acid" to GO:0032526
  * Changed synonym scope of GO:0032526 from "Related" to "Exact"
  * Copied GO:0032526 to GO:0033189 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032526
* Populated new object GO:0032527 (macro)
  * Changed name of GO:0032527 from "<new term>" to "protein exit from endoplasmic reticulum"
  * Set definition of GO:0032527 to "The directed movement of proteins from the endoplasmic reticulum."
  * Added definition dbxref GOC:rb to GO:0032527
  * Added synonym "protein exit from ER" to GO:0032527
  * Changed synonym scope of GO:0032527 from "Related" to "Exact"
  * Copied GO:0032527 to GO:0006886 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032527
* Changed definition of GO:0015424 from "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + amino acid(out) = ADP + phosphate + amino acid(in)." to "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + amino acid(out/in) = ADP + phosphate + amino acid(in/out)."
* Added definition dbxref GOC:mah to GO:0015424
* Added GO:0047078 to category gosubset_prok
* Added synonym "1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase" to GO:0047078
* Changed synonym scope of GO:0047078 from "Related" to "Exact"
* Added GO:0050586 to category gosubset_prok
* Added synonym "1H-3-hydroxy-4-oxo quinaldine 2,4-dioxygenase" to GO:0050586
* Changed synonym scope of GO:0050586 from "Related" to "Exact"
* Added synonym "1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase" to GO:0050586
* Changed synonym scope of GO:0050586 from "Related" to "Exact"
* Added synonym "endosome enlargement" to GO:0051036

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