[go-diff] GO update 08/22/2007

Wed Aug 22 21:30:39 PDT 2007

OBODIFF of gene_ontology_edit.obo version 5.461 by 5.463

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010445
* Created object of type obo:TERM with id GO:0032537
* Created object of type obo:TERM with id GO:0032538
* Created object of type obo:TERM with id GO:0032539
* Created object of type obo:TERM with id GO:0032540
* Created object of type obo:TERM with id GO:0032541
* Created object of type obo:TERM with id GO:0032542
* Populated new object GO:0010445 (macro)
  * Changed name of GO:0010445 from "<new term>" to "nuclear dicing body"
  * Set definition of GO:0010445 to "A small round nuclear body, measuring 0.2-0.8 microns in
diameter that is diffusely distributed throughout the nucleoplasm. Several proteins known to be involved in miRNA processing have been localized to these structures. D-bodies are thought to be involved in primary-miRNA processing and/or storage/assembly of miRNA processing complexes."
  * Added definition dbxref PMID:17442570 to GO:0010445
  * Added synonym "D body" to GO:0010445
  * Changed synonym scope of GO:0010445 from "Related" to "Exact"
  * Copied GO:0010445 to GO:0016604 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0010445
* Populated new object GO:0032537 (macro)
  * Changed name of GO:0032537 from "<new term>" to "host-seeking behavior"
  * Set definition of GO:0032537 to "The specific actions or reactions of an organism that are associated with finding a host organism; may include behavioral responses to light, temperature, or chemical emanations from the prospective host."
  * Added definition dbxref GOC:mah to GO:0032537
  * Added definition dbxref PMID:11931033 to GO:0032537
  * Added synonym "host-seeking behaviour" to GO:0032537
  * Changed synonym scope of GO:0032537 from "Related" to "Exact"
  * Copied GO:0032537 to GO:0007610 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032537
* Populated new object GO:0032538 (macro)
  * Changed name of GO:0032538 from "<new term>" to "regulation of host-seeking behavior"
  * Set definition of GO:0032538 to "Any process that modulates the frequency, rate or extent of any behavior associated with finding a host organism."
  * Added definition dbxref GOC:mah to GO:0032538
  * Added synonym "regulation of host-seeking behaviour" to GO:0032538
  * Copied GO:0032538 to GO:0050795 with type OBO_REL:is_a
  * Copied GO:0032538 to GO:0018991 with type part_of
  * Copied GO:0032538 to GO:0032537 with type part_of
  * Assigned namespace "biological_process" to GO:0032538
* Populated new object GO:0032539 (macro)
  * Changed name of GO:0032539 from "<new term>" to "negative regulation of host-seeking behavior"
  * Set definition of GO:0032539 to "Any process that stops, prevents or reduces the frequency, rate or extent of any behavior associated with finding a host organism."
  * Added definition dbxref GOC:mah to GO:0032539
  * Added synonym "down regulation of host-seeking behavior" to GO:0032539
  * Changed synonym scope of GO:0032539 from "Related" to "Exact"
  * Added synonym "down-regulation of host-seeking behavior" to GO:0032539
  * Changed synonym scope of GO:0032539 from "Related" to "Exact"
  * Added synonym "downregulation of host-seeking behavior" to GO:0032539
  * Changed synonym scope of GO:0032539 from "Related" to "Exact"
  * Added synonym "inhibition of host-seeking behavior" to GO:0032539
  * Changed synonym scope of GO:0032539 from "Related" to "Narrow"
  * Added synonym "negative regulation of host-seeking behaviour" to GO:0032539
  * Changed synonym scope of GO:0032539 from "Related" to "Exact"
  * Copied GO:0032539 to GO:0032538 with type OBO_REL:is_a
  * Copied GO:0032539 to GO:0048519 with type OBO_REL:is_a
  * Copied GO:0032539 to GO:0048521 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032539
* Populated new object GO:0032540 (macro)
  * Changed name of GO:0032540 from "<new term>" to "positive regulation of host-seeking behavior"
  * Set definition of GO:0032540 to "Any process that activates or increases the frequency, rate or extent of any behavior associated with finding a host organism."
  * Added definition dbxref GOC:mah to GO:0032540
  * Added synonym "activation of host-seeking behavior" to GO:0032540
  * Changed synonym scope of GO:0032540 from "Related" to "Narrow"
  * Added synonym "positive regulation of host-seeking behaviour" to GO:0032540
  * Added synonym "stimulation of host-seeking behavior" to GO:0032540
  * Changed synonym scope of GO:0032540 from "Related" to "Narrow"
  * Added synonym "up regulation of host-seeking behavior" to GO:0032540
  * Changed synonym scope of GO:0032540 from "Related" to "Exact"
  * Added synonym "up-regulation of host-seeking behavior" to GO:0032540
  * Changed synonym scope of GO:0032540 from "Related" to "Exact"
  * Added synonym "upregulation of host-seeking behavior" to GO:0032540
  * Changed synonym scope of GO:0032540 from "Related" to "Exact"
  * Copied GO:0032540 to GO:0032538 with type OBO_REL:is_a
  * Copied GO:0032540 to GO:0048520 with type OBO_REL:is_a
  * Copied GO:0032540 to GO:0048518 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032540
* Populated new object GO:0032541 (macro)
  * Changed name of GO:0032541 from "<new term>" to "cortical endoplasmic reticulum"
  * Set definition of GO:0032541 to "A cortical network of highly dynamic tubules that are juxtaposed
to the plasma membrane and undergo ring closure and tubule-branching
movements."
  * Added definition dbxref GOC:se to GO:0032541
  * Added definition dbxref PMID:10931860 to GO:0032541
  * Added definition dbxref PMID:17686782 to GO:0032541
  * Added synonym "cortical ER" to GO:0032541
  * Changed synonym scope of GO:0032541 from "Related" to "Exact"
  * Added synonym "peripheral endoplasmic reticulum" to GO:0032541
  * Changed synonym scope of GO:0032541 from "Related" to "Exact"
  * Added synonym "peripheral ER" to GO:0032541
  * Changed synonym scope of GO:0032541 from "Related" to "Exact"
  * Copied GO:0032541 to GO:0044432 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0032541
* Populated new object GO:0032542 (macro)
  * Changed name of GO:0032542 from "<new term>" to "sulfiredoxin activity"
  * Set definition of GO:0032542 to "Catalysis of the reaction: peroxiredoxin-(S-hydroxy-S-oxocysteine) + ATP + 2 R-SH <=> peroxiredoxin-(S-hydroxycysteine) + ADP + phosphate + R-S-S-R."
  * Added definition dbxref EC:1.8.98.2 to GO:0032542
  * Added general dbxref EC:1.8.98.2 to GO:0032542
  * Added general dbxref MetaCyc:1.8.98.2-RXN to GO:0032542
  * Added synonym "peroxiredoxin-(S-hydroxy-S-oxocysteine) reductase activity" to GO:0032542
  * Changed synonym scope of GO:0032542 from "Related" to "Exact"
  * Added synonym "sulphiredoxin activity" to GO:0032542
  * Changed synonym scope of GO:0032542 from "Related" to "Exact"
  * Copied GO:0032542 to GO:0016667 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0032542
* Copied GO:0006412 to GO:0044249 with type OBO_REL:is_a
* Changed definition of GO:0016074 from "The chemical reactions and pathways involving snoRNA, small nucleolar RNA, any of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing of ribosomal RNA, and they contain a long stretch of sequence complementarity to conserved sequences in mature mRNA." to "The chemical reactions and pathways involving snoRNA, small nucleolar RNA, any of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA."
* Deleted definition dbxref Oxford Dictionary of Biochemistry and Molecular Biology (ISBN:0198506732) from GO:0016074
* Added definition dbxref GOC:krc to GO:0016074
* Copied GO:0046937 to GO:0019748 with type OBO_REL:is_a