[go-diff] GO update 08/30/2007

Thu Aug 30 21:30:39 PDT 2007

OBODIFF of gene_ontology_edit.obo version 5.467 by 5.469

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0032568
* Created object of type obo:TERM with id GO:0032569
* Created object of type obo:TERM with id GO:0032570
* Created object of type obo:TERM with id GO:0032571
* Created object of type obo:TERM with id GO:0032572
* Created object of type obo:TERM with id GO:0032573
* Created object of type obo:TERM with id GO:0032574
* Created object of type obo:TERM with id GO:0032575
* Populated new object GO:0032568 (macro)
  * Changed name of GO:0032568 from "<new term>" to "general transcription from RNA polymerase II promoter"
  * Set definition of GO:0032568 to "The basal, non-specifically regulated synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Mediated by core RNA polymerase II and a set of general transcription factors; in Saccharomyces five transcription factors are necessary and sufficient for such basal transcription."
  * Added definition dbxref GOC:mah to GO:0032568
  * Copied GO:0032568 to GO:0006366 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032568
* Populated new object GO:0032569 (macro)
  * Changed name of GO:0032569 from "<new term>" to "specific transcription from RNA polymerase II promoter"
  * Set definition of GO:0032569 to "The specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. In addition to RNA polymerase II and the general transcription factors, specific transcription requires one or more specific factors that bind to specific DNA sequences or interact with the general transcription machinery."
  * Added definition dbxref GOC:mah to GO:0032569
  * Copied GO:0032569 to GO:0006366 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032569
* Populated new object GO:0032570 (macro)
  * Changed name of GO:0032570 from "<new term>" to "response to progesterone stimulus"
  * Set definition of GO:0032570 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus."
  * Added definition dbxref GOC:sl to GO:0032570
  * Copied GO:0032570 to GO:0048545 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032570
* Populated new object GO:0032571 (macro)
  * Changed name of GO:0032571 from "<new term>" to "response to vitamin K"
  * Set definition of GO:0032571 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin K stimulus."
  * Added definition dbxref GOC:sl to GO:0032571
  * Copied GO:0032571 to GO:0033273 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032571
* Populated new object GO:0032572 (macro)
  * Changed name of GO:0032572 from "<new term>" to "response to menaquinone"
  * Set definition of GO:0032572 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a menaquinone (vitamin K2) stimulus."
  * Added definition dbxref GOC:sl to GO:0032572
  * Added synonym "response to menatetrenone" to GO:0032572
  * Changed synonym scope of GO:0032572 from "Related" to "Exact"
  * Added synonym "response to vitamin K2" to GO:0032572
  * Changed synonym scope of GO:0032572 from "Related" to "Exact"
  * Copied GO:0032572 to GO:0032571 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032572
* Populated new object GO:0032573 (macro)
  * Changed name of GO:0032573 from "<new term>" to "response to phylloquinone"
  * Set definition of GO:0032573 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phylloquinone (vitamin K1) stimulus."
  * Added definition dbxref GOC:sl to GO:0032573
  * Added synonym "response to vitamin K1" to GO:0032573
  * Changed synonym scope of GO:0032573 from "Related" to "Exact"
  * Copied GO:0032573 to GO:0032571 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032573
* Populated new object GO:0032574 (macro)
  * Changed name of GO:0032574 from "<new term>" to "5'-3' RNA helicase activity"
  * Set definition of GO:0032574 to "Catalysis of the unwinding of an RNA helix in the direction 5' to 3'."
  * Added definition dbxref GOC:jp to GO:0032574
  * Added synonym "5' to 3' RNA helicase activity" to GO:0032574
  * Changed synonym scope of GO:0032574 from "Related" to "Exact"
  * Copied GO:0032574 to GO:0003724 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0032574
* Populated new object GO:0032575 (macro)
  * Changed name of GO:0032575 from "<new term>" to "ATP-dependent 5'-3' RNA helicase activity"
  * Set definition of GO:0032575 to "Catalysis of the reaction: ATP + H2O = ADP + phosphate, driving the unwinding of an RNA helix in the direction 5' to 3'."
  * Added definition dbxref GOC:jp to GO:0032575
  * Added synonym "ATP-dependent 5' to 3' RNA helicase activity" to GO:0032575
  * Changed synonym scope of GO:0032575 from "Related" to "Exact"
  * Copied GO:0032575 to GO:0032574 with type OBO_REL:is_a
  * Copied GO:0032575 to GO:0004004 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0032575
* Added synonym "3beta-hydroxy-4beta-methyl-5alpha-cholest-7-ene-4alpha-carboxylate:NAD(P)+ 3-oxidoreductase (decarboxylating)" to GO:0000252
* Changed synonym scope of GO:0000252 from "Related" to "Exact"
* Added synonym "3beta-hydroxy-4beta-methylcholestenecarboxylate 3-dehydrogenase (decarboxylating)" to GO:0000252
* Changed synonym scope of GO:0000252 from "Related" to "Exact"
* Added synonym "3beta-hydroxy-4beta-methylcholestenoate dehydrogenase" to GO:0000252
* Changed synonym scope of GO:0000252 from "Related" to "Exact"
* Added synonym "C-3 sterol dehydrogenase (C-4 decarboxylase) activity" to GO:0000252
* Changed synonym scope of GO:0000252 from "Related" to "Exact"
* Added synonym "C-3 sterol dehydrogenase activity" to GO:0000252
* Changed synonym scope of GO:0000252 from "Related" to "Exact"
* Added synonym "sterol 4alpha-carboxylic decarboxylase" to GO:0000252
* Changed synonym scope of GO:0000252 from "Related" to "Exact"
* Added synonym "sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)" to GO:0000252
* Changed synonym scope of GO:0000252 from "Related" to "Exact"
* Deleted general dbxref PMID:9680965 from synonym ADP-glucose pyrophosphorylase activity of GO:0008878
* Added synonym "menatetrenone metabolic process" to GO:0009233
* Changed synonym scope of GO:0009233 from "Related" to "Exact"
* Added synonym "menatetrenone metabolism" to GO:0009233
* Changed synonym scope of GO:0009233 from "Related" to "Exact"
* Added synonym "menatetrenone biosynthesis" to GO:0009234
* Changed synonym scope of GO:0009234 from "Related" to "Exact"
* Added synonym "menatetrenone biosynthetic process" to GO:0009234
* Changed synonym scope of GO:0009234 from "Related" to "Exact"
* Added synonym "menatetrenone catabolic process" to GO:0042361
* Changed synonym scope of GO:0042361 from "Related" to "Exact"
* Added synonym "menatetrenone catabolism" to GO:0042361
* Changed synonym scope of GO:0042361 from "Related" to "Exact"
* Changed synonym scope of GO:0045551 from "Exact" to "Broad"
* Changed synonym scope of GO:0047613 from "Exact" to "Broad"
* Changed name of GO:0060113 from "inner ear receptor cell differenation" to "inner ear receptor cell differentiation"
* Added synonym "inner ear hair cell differentiation" to GO:0060113
* Changed synonym scope of GO:0060113 from "Related" to "Exact"
* Deleted synonym "vestibular hair cell" from GO:0060114
* Added synonym "vestibular hair cell differentiation" to GO:0060114
* Changed synonym scope of GO:0060114 from "Related" to "Exact"
* Added synonym "vestibular hair cell fate commitment" to GO:0060115
* Changed synonym scope of GO:0060115 from "Related" to "Exact"
* Added synonym "vestibular hair cell morphogenesis" to GO:0060116
* Changed synonym scope of GO:0060116 from "Related" to "Exact"
* Added synonym "auditory hair cell development" to GO:0060117
* Changed synonym scope of GO:0060117 from "Related" to "Exact"
* Added synonym "vestibular hair cell development" to GO:0060118
* Changed synonym scope of GO:0060118 from "Related" to "Exact"
* Added synonym "inner ear hair cell development" to GO:0060119
* Changed synonym scope of GO:0060119 from "Related" to "Exact"
* Added synonym "inner ear hair cell fate commitment" to GO:0060120
* Changed synonym scope of GO:0060120 from "Related" to "Exact"
* Added synonym "vestibular hair cell stereocilium organization and biogenesis" to GO:0060121
* Changed synonym scope of GO:0060121 from "Related" to "Exact"
* Added synonym "inner ear hair cell receptor stereocilium organization" to GO:0060122
* Changed synonym scope of GO:0060122 from "Related" to "Exact"