From gocvs at genome.Stanford.EDU  Sat Dec  1 21:30:43 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Sat, 1 Dec 2007 21:30:43 -0800 (PST)
Subject: [go-diff] GO update 12/01/2007
Message-ID: <200712020530.VAA20234@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.579 by 5.580

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Changed synonym scope of GO:0005179 from "Related" to "Narrow"
* Changed synonym scope of GO:0005179 from "Related" to "Narrow"
* Changed synonym scope of GO:0005179 from "Related" to "Narrow"
* Changed synonym scope of GO:0051091 from "Narrow" to "Exact"


From gocvs at genome.Stanford.EDU  Mon Dec  3 21:30:44 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Mon, 3 Dec 2007 21:30:44 -0800 (PST)
Subject: [go-diff] GO update 12/03/2007
Message-ID: <200712040530.VAA06394@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.580 by 5.583

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0033790
* Created object of type obo:TERM with id GO:0033833
* Created object of type obo:TERM with id GO:0033845
* Created object of type obo:TERM with id GO:0033859
* Created object of type obo:TERM with id GO:0033860
* Created object of type obo:TERM with id GO:0033861
* Created object of type obo:TERM with id GO:0033864
* Populated new object GO:0033790 (macro)
  * Changed name of GO:0033790 from "<new term>" to "hydroxymethylfurfural reductase activity"
  * Set definition of GO:0033790 to "Catalysis of the reaction: 5-hydroxymethylfurfural + NAD(P)H + H+ = 2,5-bis-hydroxymethylfuran + NAD(P)+."
  * Added definition dbxref GOC:jp to GO:0033790
  * Added definition dbxref GOC:mah to GO:0033790
  * Added definition dbxref PMID:15338422 to GO:0033790
  * Added definition dbxref PMID:16652391 to GO:0033790
  * Copied GO:0033790 to GO:0016616 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033790
* Populated new object GO:0033833 (macro)
  * Changed name of GO:0033833 from "<new term>" to "hydroxymethylfurfural reductase (NADH) activity"
  * Set definition of GO:0033833 to "Catalysis of the reaction: 5-hydroxymethylfurfural + NADH + H+ = 2,5-bis-hydroxymethylfuran + NAD+."
  * Added definition dbxref GOC:jp to GO:0033833
  * Added definition dbxref GOC:mah to GO:0033833
  * Added definition dbxref PMID:15338422 to GO:0033833
  * Added definition dbxref PMID:16652391 to GO:0033833
  * Copied GO:0033833 to GO:0033790 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033833
* Populated new object GO:0033845 (macro)
  * Changed name of GO:0033845 from "<new term>" to "hydroxymethylfurfural reductase (NADPH) activity"
  * Set definition of GO:0033845 to "Catalysis of the reaction: 5-hydroxymethylfurfural + NADPH + H+ = 2,5-bis-hydroxymethylfuran + NADP+."
  * Added definition dbxref GOC:jp to GO:0033845
  * Added definition dbxref GOC:mah to GO:0033845
  * Added definition dbxref PMID:15338422 to GO:0033845
  * Added definition dbxref PMID:16652391 to GO:0033845
  * Copied GO:0033845 to GO:0033790 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033845
* Populated new object GO:0033859 (macro)
  * Changed name of GO:0033859 from "<new term>" to "furaldehyde metabolic process"
  * Set definition of GO:0033859 to "The chemical reactions and pathways involving furaldehyde, a furan ring-containing aldehyde compound which can be formed from the thermal decomposition of biomass."
  * Added definition dbxref GOC:jp to GO:0033859
  * Added definition dbxref PMID:15338422 to GO:0033859
  * Added definition dbxref PMID:16652391 to GO:0033859
  * Copied GO:0033859 to GO:0046483 with type OBO_REL:is_a
  * Copied GO:0033859 to GO:0006081 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033859
* Populated new object GO:0033860 (macro)
  * Changed name of GO:0033860 from "<new term>" to "regulation of NAD(P)H oxidase activity"
  * Set definition of GO:0033860 to "Any process that modulates the activity of the enzyme NAD(P)H oxidase."
  * Added definition dbxref GOC:mah to GO:0033860
  * Copied GO:0033860 to GO:0051341 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033860
* Populated new object GO:0033861 (macro)
  * Changed name of GO:0033861 from "<new term>" to "negative regulation of NAD(P)H oxidase activity"
  * Set definition of GO:0033861 to "Any process that stops or reduces the activity of the enzyme NAD(P)H oxidase."
  * Added definition dbxref GOC:mah to GO:0033861
  * Added GO:0033861 to category gosubset_prok
  * Added synonym "down regulation of NAD(P)H oxidase activity" to GO:0033861
  * Changed synonym scope of GO:0033861 from "Related" to "Exact"
  * Added synonym "down-regulation of NAD(P)H oxidase activity" to GO:0033861
  * Changed synonym scope of GO:0033861 from "Related" to "Exact"
  * Added synonym "downregulation of NAD(P)H oxidase activity" to GO:0033861
  * Changed synonym scope of GO:0033861 from "Related" to "Exact"
  * Added synonym "inhibition of NAD(P)H oxidase activity" to GO:0033861
  * Changed synonym scope of GO:0033861 from "Related" to "Narrow"
  * Copied GO:0033861 to GO:0051354 with type OBO_REL:is_a
  * Copied GO:0033861 to GO:0033860 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033861
* Populated new object GO:0033864 (macro)
  * Changed name of GO:0033864 from "<new term>" to "positive regulation of NAD(P)H oxidase activity"
  * Set definition of GO:0033864 to "Any process that activates or increases the activity of the enzyme NAD(P)H oxidase."
  * Added definition dbxref GOC:mah to GO:0033864
  * Added GO:0033864 to category gosubset_prok
  * Added synonym "activation of NAD(P)H oxidase activity" to GO:0033864
  * Changed synonym scope of GO:0033864 from "Related" to "Narrow"
  * Added synonym "stimulation of NAD(P)H oxidase activity" to GO:0033864
  * Changed synonym scope of GO:0033864 from "Related" to "Narrow"
  * Added synonym "up regulation of NAD(P)H oxidase activity" to GO:0033864
  * Changed synonym scope of GO:0033864 from "Related" to "Exact"
  * Added synonym "up-regulation of NAD(P)H oxidase activity" to GO:0033864
  * Changed synonym scope of GO:0033864 from "Related" to "Exact"
  * Added synonym "upregulation of NAD(P)H oxidase activity" to GO:0033864
  * Changed synonym scope of GO:0033864 from "Related" to "Exact"
  * Copied GO:0033864 to GO:0033860 with type OBO_REL:is_a
  * Copied GO:0033864 to GO:0051353 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033864
* Deleted GO:0001932 --OBO_REL:is_a--> GO:0006521
* Deleted GO:0001933 --OBO_REL:is_a--> GO:0045763
* Deleted GO:0001934 --OBO_REL:is_a--> GO:0045764
* Added general dbxref EC:1.2.4.4 to synonym 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) activity of GO:0003863
* Added general dbxref EC:1.2.4.4 to synonym 3-methyl-2-oxobutanoate:dihydrolipoyllysine-residue (2-methylpropanoyl)transferase-lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-2-methylpropanoylating) of GO:0003863
* Added general dbxref EC:1.9.3.1 to synonym aa3-type cytochrome c oxidase of GO:0004129
* Added general dbxref EC:1.9.3.1 to synonym ba3-type cytochrome c oxidase of GO:0004129
* Added general dbxref EC:1.9.3.1 to synonym caa3-type cytochrome c oxidase of GO:0004129
* Added general dbxref EC:1.9.3.1 to synonym cbb3-type cytochrome c oxidase of GO:0004129
* Added general dbxref EC:1.9.3.1 to synonym ferrocytochrome c oxidase of GO:0004129
* Changed synonym scope of GO:0004129 from "Exact" to "Narrow"
* Added general dbxref EC:1.9.3.1 to synonym ferrocytochrome-c:oxygen oxidoreductase of GO:0004129
* Changed synonym scope of GO:0004129 from "Exact" to "Narrow"
* Added general dbxref EC:1.9.3.1 to synonym indophenol oxidase of GO:0004129
* Changed synonym scope of GO:0004129 from "Exact" to "Narrow"
* Added general dbxref EC:1.9.3.1 to synonym indophenolase of GO:0004129
* Changed synonym scope of GO:0004129 from "Exact" to "Narrow"
* Added general dbxref EC:1.9.3.1 to synonym NADH cytochrome c oxidase of GO:0004129
* Added general dbxref EC:1.8.1.4 to synonym dihydrolipoamide dehydrogenase activity of GO:0004148
* Added general dbxref EC:1.8.1.4 to synonym dihydrolipoamide reduction of GO:0004148
* Added general dbxref EC:1.8.1.4 to synonym dihydrolipoamide:NAD+ oxidoreductase of GO:0004148
* Added general dbxref EC:1.8.1.4 to synonym dihydrolipoylprotein reduction of GO:0004148
* Added general dbxref EC:1.8.1.4 to synonym protein-6-N-(dihydrolipoyl)lysine:NAD+ oxidoreductase of GO:0004148
* Added general dbxref EC:1.8.1.4 to synonym protein-N6-(dihydrolipoyl)lysine:NAD+ oxidoreductase of GO:0004148
* Added general dbxref EC:1.3.1.9 to synonym acyl-acyl-carrier-protein:NAD+ oxidoreductase of GO:0004318
* Added general dbxref EC:1.3.1.9 to synonym enoyl-[acyl-carrier protein] reductase (NADH) activity of GO:0004318
* Added general dbxref EC:1.3.1.9 to synonym enoyl-ACP reductase (NADH) activity of GO:0004318
* Added general dbxref EC:1.3.1.9 to synonym enoyl-acyl-carrier-protein reductase (NADH) of GO:0004318
* Added general dbxref EC:1.4.1.13 to synonym L-glutamate:NADP+ oxidoreductase (transaminating) of GO:0004355
* Added general dbxref EC:1.4.1.13 to synonym NADPH-linked glutamate synthase of GO:0004355
* Added general dbxref EC:1.4.4.2 to synonym glycine-cleavage complex of GO:0004375
* Added general dbxref EC:1.4.4.2 to synonym glycine:H-protein-lipoyllysine oxidoreductase (decarboxylating, acceptor-amino-methylating) of GO:0004375
* Added general dbxref EC:1.4.4.2 to synonym glycine:lipoylprotein oxidoreductase (decarboxylating and acceptor-aminomethylating) of GO:0004375
* Added general dbxref EC:1.4.4.2 to synonym P-protein of GO:0004375
* Added general dbxref EC:1.4.4.2 to synonym protein P1 of GO:0004375
* Deleted synonym "5,10-methylenetetrahydrofolate:NAD+ oxidoreductase" from GO:0004486
* Added synonym "N5,N10-methylenetetrahydrofolate dehydrogenase activity" to GO:0004486
* Added general dbxref EC:1.5.1.5 to synonym N5,N10-methylenetetrahydrofolate dehydrogenase activity of GO:0004486
* Changed synonym scope of GO:0004486 from "Related" to "Exact"
* Added synonym "5,10-methylenetetrahydrofolate dehydrogenase activity" to GO:0004487
* Added general dbxref EC:1.5.1.5 to synonym 5,10-methylenetetrahydrofolate dehydrogenase activity of GO:0004487
* Changed synonym scope of GO:0004487 from "Related" to "Exact"
* Added synonym "5,10-methylenetetrahydrofolate:NAD+ oxidoreductase" to GO:0004487
* Added general dbxref EC:1.5.1.15 to synonym 5,10-methylenetetrahydrofolate:NAD+ oxidoreductase of GO:0004487
* Changed synonym scope of GO:0004487 from "Related" to "Exact"
* Deleted synonym "5,10-methylenetetrahydrofolate dehydrogenase activity" from GO:0004488
* Deleted synonym "N5,N10-methylenetetrahydrofolate dehydrogenase activity" from GO:0004488
* Added general dbxref EC:1.8.4.8 to synonym adenosine 3',5'-bisphosphate,sulfite:oxidized-thioredoxin oxidoreductase (3'-phosphoadenosine-5'-phosphosulfate-forming) of GO:0004604
* Added general dbxref EC:1.8.4.8 to synonym adenosine 3',5'-bisphosphate,sulfite:thioredoxin-disulfide oxidoreductase (3'-phosphoadenosine-5'-phosphosulfate-forming) of GO:0004604
* Deleted GO:0006649 --OBO_REL:is_a--> GO:0006644
* Copied GO:0006649 to GO:0015914 with type OBO_REL:is_a
* Deleted GO:0006754 --OBO_REL:is_a--> GO:0009108
* Changed name of GO:0007105 from "site selection involved in cytokinesis" to "cytokinesis, site selection"
* Deleted synonym "cytokinesis, site selection" from GO:0007105
* Added synonym "site selection involved in cytokinesis" to GO:0007105
* Added general dbxref GOC:tb to synonym site selection involved in cytokinesis of GO:0007105
* Added general dbxref GOC:dph to synonym site selection involved in cytokinesis of GO:0007105
* Changed synonym scope of GO:0007105 from "Related" to "Exact"
* Changed name of GO:0007108 from "initiation of separation involved in cytokinesis" to "cytokinesis, initiation of separation"
* Deleted synonym "cytokinesis, initiation of separation" from GO:0007108
* Added synonym "initiation of separation involved in cytokinesis" to GO:0007108
* Added general dbxref GOC:tb to synonym initiation of separation involved in cytokinesis of GO:0007108
* Added general dbxref GOC:dph to synonym initiation of separation involved in cytokinesis of GO:0007108
* Changed synonym scope of GO:0007108 from "Related" to "Exact"
* Changed name of GO:0007109 from "completion of separation involved in cytokinesis" to "cytokinesis, completion of separation"
* Deleted synonym "cytokinesis, completion of separation" from GO:0007109
* Added synonym "completion of separation involved in cytokinesis" to GO:0007109
* Added general dbxref GOC:tb to synonym completion of separation involved in cytokinesis of GO:0007109
* Added general dbxref GOC:dph to synonym completion of separation involved in cytokinesis of GO:0007109
* Changed synonym scope of GO:0007109 from "Related" to "Exact"
* Added general dbxref EC:1.4.3.16 to synonym L-aspartate:oxygen oxidoreductase (deaminating) of GO:0008734
* Added general dbxref EC:1.6.1.1 to synonym energy-linked transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym energy-linked transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym H+-thase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym H+-thase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym NAD transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym NAD transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym NADH transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym NADH transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym NADH-NADP-transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym NADH-NADP-transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym NADPH-NAD oxidoreductase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym NADPH-NAD oxidoreductase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym NADPH-NAD transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym NADPH-NAD transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym NADPH:NAD+ transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym NADPH:NAD+ transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym nicotinamide adenine dinucleotide (phosphate) transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym nicotinamide adenine dinucleotide (phosphate) transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym pyridine nucleotide transferase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym pyridine nucleotide transferase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym NAD(P) transhydrogenase (AB-specific) activity of GO:0008750
* Added general dbxref EC:1.6.1.2 to synonym NADPH:NAD+ oxidoreductase (AB-specific) of GO:0008750
* Added general dbxref EC:1.6.99.6 to synonym NADPH oxidase of GO:0008753
* Added general dbxref EC:1.6.99.6 to synonym NADPH:(quinone-acceptor) oxidoreductase of GO:0008753
* Added general dbxref EC:1.6.99.6 to synonym reduced nicotinamide adenine dinucleotide phosphate (quinone) dehydrogenase of GO:0008753
* Added general dbxref EC:1.7.99.4 to synonym nitrate reductase (acceptor) of GO:0008940
* Added general dbxref EC:1.7.99.4 to synonym nitrite:(acceptor) oxidoreductase of GO:0008940
* Added general dbxref EC:1.7.99.4 to synonym nitrite:acceptor oxidoreductase of GO:0008940
* Added general dbxref EC:1.6.6.9 to synonym NADH:trimethylamine-N-oxide oxidoreductase of GO:0009033
* Added general dbxref EC:1.6.6.9 to synonym trimethylamine N-oxide reductase of GO:0009033
* Added general dbxref EC:1.6.6.9 to synonym trimethylamine oxide reductase of GO:0009033
* Deleted GO:0009670 --OBO_REL:is_a--> GO:0015238
* Added general dbxref EC:1.8.99.2 to synonym adenosine 5'-phosphosulfate reductase of GO:0009973
* Added general dbxref EC:1.8.99.2 to synonym adenosine phosphosulfate reductase activity of GO:0009973
* Added general dbxref EC:1.8.99.2 to synonym adenylyl-sulphate reductase activity of GO:0009973
* Added general dbxref EC:1.8.99.2 to synonym AMP, sulfite:(acceptor) oxidoreductase (adenosine-5'-phosphosulfate-forming) of GO:0009973
* Added general dbxref EC:1.8.99.2 to synonym AMP, sulfite:acceptor oxidoreductase (adenosine-5'-phosphosulfate-forming) of GO:0009973
* Added general dbxref EC:1.8.99.2 to synonym APS reductase activity of GO:0009973
* Added general dbxref EC:1.8.99.2 to synonym APS-reductase of GO:0009973
* Added general dbxref EC:1.4.1.14 to synonym glutamate (reduced nicotinamide adenine dinucleotide) synthase of GO:0016040
* Added general dbxref EC:1.4.1.14 to synonym L-glutamate synthase (NADH) of GO:0016040
* Added general dbxref EC:1.4.1.14 to synonym L-glutamate:NAD+ oxidoreductase (transaminating) of GO:0016040
* Added general dbxref EC:1.4.1.14 to synonym NADH: GOGAT of GO:0016040
* Added general dbxref EC:1.11.1.10 to synonym chloride:hydrogen-peroxide oxidoreductase of GO:0016691
* Added general dbxref EC:1.13.11.2 to synonym catechol 2,3-oxygenase of GO:0018577
* Added general dbxref EC:1.13.11.2 to synonym catechol oxygenase of GO:0018577
* Added general dbxref EC:1.13.11.2 to synonym catechol:oxygen 2,3-oxidoreductase (decyclizing) of GO:0018577
* Added general dbxref EC:1.13.11.2 to synonym pyrocatechol 2,3-dioxygenase of GO:0018577
* Deleted GO:0030104 --OBO_REL:is_a--> GO:0050878
* Copied GO:0033832 to GO:0046527 with type OBO_REL:is_a
* Deleted GO:0045332 --OBO_REL:is_a--> GO:0006644
* Deleted GO:0046034 --OBO_REL:is_a--> GO:0051186
* Added general dbxref EC:1.8.4.4 to synonym glutathione:cystine oxidoreductase of GO:0047141
* Added general dbxref EC:1.8.4.4 to synonym GSH-cystine transhydrogenase of GO:0047141
* Added general dbxref EC:1.8.4.4 to synonym NADPH-dependent GSH-cystine transhydrogenase of GO:0047141
* Added general dbxref EC:1.8.1.6 to synonym cystine reductase (NADH) activity of GO:0050456
* Added general dbxref EC:1.8.1.6 to synonym cystine reductase (NADH2) of GO:0050456
* Added general dbxref EC:1.8.1.6 to synonym L-cysteine:NAD+ oxidoreductase of GO:0050456
* Added general dbxref EC:1.8.1.6 to synonym NADH2:L-cystine oxidoreductase of GO:0050456
* Copied GO:0050891 to GO:0050878 with type OBO_REL:is_a
* Changed synonym scope of GO:0051091 from "Exact" to "Narrow"


From gocvs at genome.Stanford.EDU  Tue Dec  4 21:30:43 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Tue, 4 Dec 2007 21:30:43 -0800 (PST)
Subject: [go-diff] GO update 12/04/2007
Message-ID: <200712050530.VAA21764@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.583 by 5.587

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0000491
* Created object of type obo:TERM with id GO:0000492
* Created object of type obo:TERM with id GO:0000493
* Created object of type obo:TERM with id GO:0000494
* Created object of type obo:TERM with id GO:0000495
* Created object of type obo:TERM with id GO:0010471
* Created object of type obo:TERM with id GO:0010472
* Created object of type obo:TERM with id GO:0010473
* Created object of type obo:TERM with id GO:0010474
* Created object of type obo:TERM with id GO:0010475
* Populated new object GO:0000491 (macro)
  * Changed name of GO:0000491 from "<new term>" to "snoRNP assembly"
  * Set definition of GO:0000491 to "The aggregation, arrangement and bonding together of proteins and a snoRNA to form a small nucleolar ribonucleoprotein (snoRNP) complex."
  * Added definition dbxref GO:krc to GO:0000491
  * Added synonym "small nucleolar ribonucleoprotein complex assembly" to GO:0000491
  * Changed synonym scope of GO:0000491 from "Related" to "Exact"
  * Copied GO:0000491 to GO:0022618 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0000491
* Populated new object GO:0000492 (macro)
  * Changed name of GO:0000492 from "<new term>" to "box C/D snoRNP assembly"
  * Set definition of GO:0000492 to "The aggregation, arrangement and bonding together of proteins and a box C/D snoRNA to form a box C/D small nucleolar ribonucleoprotein (snoRNP) complex."
  * Added definition dbxref GO:krc to GO:0000492
  * Added synonym "box C/D small nucleolar ribonucleoprotein complex assembly" to GO:0000492
  * Changed synonym scope of GO:0000492 from "Related" to "Exact"
  * Copied GO:0000492 to GO:0000491 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0000492
* Populated new object GO:0000493 (macro)
  * Changed name of GO:0000493 from "<new term>" to "box H/ACA snoRNP assembly"
  * Set definition of GO:0000493 to "The aggregation, arrangement and bonding together of proteins and a box H/ACA snoRNA to form a box H/ACA small nucleolar ribonucleoprotein (snoRNP) complex."
  * Added definition dbxref GO:krc to GO:0000493
  * Added definition dbxref PMID:12515383 to GO:0000493
  * Added synonym "box H/ACA small nucleolar ribonucleoprotein complex assembly" to GO:0000493
  * Changed synonym scope of GO:0000493 from "Related" to "Exact"
  * Copied GO:0000493 to GO:0000491 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0000493
* Populated new object GO:0000494 (macro)
  * Changed name of GO:0000494 from "<new term>" to "box C/D snoRNA 3'-end processing"
  * Set definition of GO:0000494 to "Any process involved in forming the mature 3' end of a box C/D snoRNA molecule."
  * Added definition dbxref GO:krc to GO:0000494
  * Added synonym "box C/D snoRNA 3' end processing" to GO:0000494
  * Changed synonym scope of GO:0000494 from "Related" to "Exact"
  * Copied GO:0000494 to GO:0031126 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0000494
* Populated new object GO:0000495 (macro)
  * Changed name of GO:0000495 from "<new term>" to "box H/ACA snoRNA 3'-end processing"
  * Set definition of GO:0000495 to "Any process involved in forming the mature 3' end of a box H/ACA snoRNA molecule."
  * Added definition dbxref GO:krc to GO:0000495
  * Added synonym "box H/ACA snoRNA 3' end processing" to GO:0000495
  * Changed synonym scope of GO:0000495 from "Related" to "Exact"
  * Copied GO:0000495 to GO:0031126 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0000495
* Populated new object GO:0010471 (macro)
  * Changed name of GO:0010471 from "<new term>" to "GDP-galactose:mannose-1-phosphate guanyltransferase activity"
  * Set definition of GO:0010471 to "Catalysis of the reaction: GDP-galactose-1-phosphate +
mannose-1-phosphate = galactose-1-phosphate + GDP-mannose."
  * Added definition dbxref PMID:17485667 to GO:0010471
  * Copied GO:0010471 to GO:0008905 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010471
* Populated new object GO:0010472 (macro)
  * Changed name of GO:0010472 from "<new term>" to "GDP-galactose:glucose-1-phosphate guanyltransferase activity"
  * Set definition of GO:0010472 to "Catalysis of the reaction: GDP-galactose-1-phosphate +
glucose-1-phosphate = galactose-1-phosphate + GDP-glucose."
  * Added definition dbxref PMID:17485667 to GO:0010472
  * Copied GO:0010472 to GO:0016779 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010472
* Populated new object GO:0010473 (macro)
  * Changed name of GO:0010473 from "<new term>" to "GDP-galactose:myoinositol-1-phosphate guanyltransferase activity"
  * Set definition of GO:0010473 to "Catalysis of the reaction: GDP-galactose-1-phosphate +
myoinositol-1-phosphate = galactose-1-phosphate + GDP-myoinositol."
  * Added definition dbxref PMID:17485667 to GO:0010473
  * Copied GO:0010473 to GO:0016779 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010473
* Populated new object GO:0010474 (macro)
  * Changed name of GO:0010474 from "<new term>" to "glucose-1-phosphate guanylyltransferase (GDP) activity"
  * Set definition of GO:0010474 to "Catalysis of the reaction: GDP + D-glucose 1-phosphate = phosphate
+ GDP-glucose."
  * Added definition dbxref PMID:17462988 to GO:0010474
  * Added synonym "GDP:Glucose-1- phosphate guanyltransferase activity " to GO:0010474
  * Changed synonym scope of GO:0010474 from "Related" to "Exact"
  * Copied GO:0010474 to GO:0016779 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010474
* Populated new object GO:0010475 (macro)
  * Changed name of GO:0010475 from "<new term>" to "galactose-1-phosphate guanylyltransferase (GDP) activity"
  * Set definition of GO:0010475 to "Catalysis of the reaction: GDP + L-galactose 1-phosphate =
phosphate + GDP-galactose."
  * Added definition dbxref PMID:17462988 to GO:0010475
  * Copied GO:0010475 to GO:0016779 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010475
* Changed name of GO:0047769 from "carboxycyclohexadienyl dehydratase activity" to "arogenate dehydratase activity"
* Deleted synonym "arogenate dehydratase activity" from GO:0047769
* Added synonym "carboxycyclohexadienyl dehydratase activity" to GO:0047769
* Changed synonym scope of GO:0047769 from "Related" to "Exact"


From gocvs at genome.Stanford.EDU  Wed Dec  5 21:30:45 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Wed, 5 Dec 2007 21:30:45 -0800 (PST)
Subject: [go-diff] GO update 12/05/2007
Message-ID: <200712060530.VAA08702@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.587 by 5.589

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010476
* Created object of type obo:TERM with id GO:0010477
* Created object of type obo:TERM with id GO:0010478
* Created object of type obo:TERM with id GO:0010479
* Populated new object GO:0010476 (macro)
  * Changed name of GO:0010476 from "<new term>" to "gibberellin-mediated signaling"
  * Set definition of GO:0010476 to "The series of molecular signals generated as a consequence of gibberellin stimulus."
  * Added definition dbxref PMID:17521411 to GO:0010476
  * Copied GO:0010476 to GO:0009755 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010476
* Populated new object GO:0010477 (macro)
  * Changed name of GO:0010477 from "<new term>" to "response to sulfur dioxide"
  * Set definition of GO:0010477 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sulfur dioxide (SO2) stimulus."
  * Added definition dbxref PMID:17425719 to GO:0010477
  * Copied GO:0010477 to GO:0010035 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010477
* Populated new object GO:0010478 (macro)
  * Changed name of GO:0010478 from "<new term>" to "chlororespiration"
  * Set definition of GO:0010478 to "A respiratory electron flow (from NAD(P)H to plastoquinone (PQ) and O2) involving both a nonphotochemical reduction and re-oxidation of PQ pool."
  * Added definition dbxref GOC:TB to GO:0010478
  * Added definition dbxref PMID:17573537 to GO:0010478
  * Copied GO:0010478 to GO:0006118 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010478
* Populated new object GO:0010479 (macro)
  * Changed name of GO:0010479 from "<new term>" to "stele development"
  * Set definition of GO:0010479 to "The process whose specific outcome is the progression of the stele over time, from its formation to the mature structure. The stele is the central column of primary vascular tissue in the root and any tissue that it surrounds."
  * Added definition dbxref GOC:TB to GO:0010479
  * Copied GO:0010479 to GO:0009888 with type OBO_REL:is_a
  * Copied GO:0010479 to GO:0048364 with type part_of
  * Assigned namespace "biological_process" to GO:0010479
* Added comment "Note that this term specifically refers to the reaction proceeding in the direction shown; it should therefore be used to annotate gene products that catalyze the oxidation of reduced ferredoxin or adrenodoxin; also consider annotating to the molecular function term 'NADPH-adrenodoxin reductase activity ; GO:0015039'."
* Deleted synonym "adrenodoxin reductase activity" from GO:0004324
* Deleted synonym "NADPH:adrenodoxin oxidoreductase activity" from GO:0004324
* Deleted GO:0006285 --OBO_REL:is_a--> GO:0009264
* Copied GO:0006285 to GO:0006308 with type OBO_REL:is_a
* Deleted GO:0009740 --OBO_REL:is_a--> GO:0009755
* Copied GO:0009740 to GO:0010476 with type OBO_REL:is_a
* Changed definition of GO:0010471 from "Catalysis of the reaction: GDP-galactose-1-phosphate +
mannose-1-phosphate = galactose-1-phosphate + GDP-mannose." to "Catalysis of the reaction: GDP-galactose-1-phosphate + mannose-1-phosphate = galactose-1-phosphate + GDP-mannose."
* Changed definition of GO:0010472 from "Catalysis of the reaction: GDP-galactose-1-phosphate +
glucose-1-phosphate = galactose-1-phosphate + GDP-glucose." to "Catalysis of the reaction: GDP-galactose-1-phosphate + glucose-1-phosphate = galactose-1-phosphate + GDP-glucose."
* Changed definition of GO:0010473 from "Catalysis of the reaction: GDP-galactose-1-phosphate +
myoinositol-1-phosphate = galactose-1-phosphate + GDP-myoinositol." to "Catalysis of the reaction: GDP-galactose-1-phosphate + myoinositol-1-phosphate = galactose-1-phosphate + GDP-myoinositol."
* Changed definition of GO:0010474 from "Catalysis of the reaction: GDP + D-glucose 1-phosphate = phosphate
+ GDP-glucose." to "Catalysis of the reaction: GDP + D-glucose 1-phosphate = phosphate + GDP-glucose."
* Changed definition of GO:0010475 from "Catalysis of the reaction: GDP + L-galactose 1-phosphate =
phosphate + GDP-galactose." to "Catalysis of the reaction: GDP + L-galactose 1-phosphate = phosphate + GDP-galactose."
* Added comment "Note that this term specifically refers to the reaction proceeding in the direction shown; under physiological conditions adrenodoxin reduction by adrenodoxin reductase is coupled with electron transfer from AdR to P450, which catalyzes an irreversible monooxygenation reaction. This term should therefore be used to annotate gene products that catalyze the reduction of oxidized adrenodoxin; also consider annotating to the molecular function term 'ferredoxin-NADP+ reductase activity ; GO:0004324'."
* Added definition dbxref GOC:kd to GO:0015039
* Added synonym "adrenodoxin reductase activity" to GO:0015039
* Added general dbxref EC:1.18.1.2 to synonym adrenodoxin reductase activity of GO:0015039
* Changed synonym scope of GO:0015039 from "Related" to "Broad"
* Added synonym "adrenodoxin-type ferredoxin reductase activity" to GO:0015039
* Added general dbxref GOC:kd to synonym adrenodoxin-type ferredoxin reductase activity of GO:0015039
* Changed synonym scope of GO:0015039 from "Related" to "Exact"
* Added synonym "NADPH:adrenodoxin oxidoreductase activity" to GO:0015039
* Added general dbxref EC:1.18.1.2 to synonym NADPH:adrenodoxin oxidoreductase activity of GO:0015039
* Changed synonym scope of GO:0015039 from "Related" to "Exact"
* Deleted definition dbxref OC:GOC:mtg_transport from GO:0015250
* Added definition dbxref `GOC:mtg_transport to GO:0015250
* Deleted GO:0043793 --OBO_REL:is_a--> GO:0003824
* Copied GO:0043793 to GO:0016763 with type OBO_REL:is_a
* changed "is transitive" status of part_of to true


From gocvs at genome.Stanford.EDU  Thu Dec  6 21:30:43 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Thu, 6 Dec 2007 21:30:43 -0800 (PST)
Subject: [go-diff] GO update 12/06/2007
Message-ID: <200712070530.VAA25379@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.589 by 5.591

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010480
* Created object of type obo:TERM with id GO:0010481
* Created object of type obo:TERM with id GO:0010482
* Created object of type obo:TERM with id GO:0010483
* Created object of type obo:TERM with id GO:0033865
* Created object of type obo:TERM with id GO:0033866
* Created object of type obo:TERM with id GO:0033869
* Created object of type obo:TERM with id GO:0033875
* Created object of type obo:TERM with id GO:0034030
* Created object of type obo:TERM with id GO:0034031
* Created object of type obo:TERM with id GO:0034032
* Created object of type obo:TERM with id GO:0034033
* Created object of type obo:TERM with id GO:0034034
* Created object of type obo:TERM with id GO:0034035
* Created object of type obo:TERM with id GO:0034036
* Created object of type obo:TERM with id GO:0034037
* Populated new object GO:0010480 (macro)
  * Changed name of GO:0010480 from "<new term>" to "microsporocyte differentiation"
  * Set definition of GO:0010480 to "The process aimed at the progression of a microsporocyte cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. A microsporocyte is a diploid (2n) cell that undergoes meiosis and forms four haploid (1n) microspores; also called microspore mother cell and, in seed plants, pollen mother cell."
  * Added definition dbxref Cell type ontology (CL:000248) to GO:0010480
  * Added definition dbxref PMID:16751349 to GO:0010480
  * Added synonym "pollen mother cell differentiation" to GO:0010480
  * Copied GO:0010480 to GO:0048653 with type part_of
  * Copied GO:0010480 to GO:0030154 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010480
* Populated new object GO:0010481 (macro)
  * Changed name of GO:0010481 from "<new term>" to "epidermal cell division"
  * Set definition of GO:0010481 to "The processes resulting in the physical partitioning and separation of an epidermal cell, any of the cells making up the epidermis, into daughter cells."
  * Added definition dbxref PMID:17450124 to GO:0010481
  * Copied GO:0010481 to GO:0051301 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010481
* Populated new object GO:0010482 (macro)
  * Changed name of GO:0010482 from "<new term>" to "regulation of epidermal cell division"
  * Set definition of GO:0010482 to "Any process that modulates the frequency, rate or extent of the physical partitioning and separation of an epidermal cell into daughter cells. An epidermal cell is any of the cells that make up the epidermis."
  * Added definition dbxref PMID:17450124 to GO:0010482
  * Copied GO:0010482 to GO:0051302 with type OBO_REL:is_a
  * Copied GO:0010482 to GO:0010481 with type part_of
  * Assigned namespace "biological_process" to GO:0010482
* Populated new object GO:0010483 (macro)
  * Changed name of GO:0010483 from "<new term>" to "pollen tube reception"
  * Set definition of GO:0010483 to "Interaction between the pollen tube, part of the male gametophyte, and the ovule, part of the female gametophyte, that results in the arrest of pollen tube growth, rupture of the pollen tube and the release of the sperm cells."
  * Added definition dbxref GOC:TB to GO:0010483
  * Added definition dbxref PMID:17673660 to GO:0010483
  * Copied GO:0010483 to GO:0009856 with type part_of
  * Copied GO:0010483 to GO:0051703 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010483
* Populated new object GO:0033865 (macro)
  * Changed name of GO:0033865 from "<new term>" to "nucleoside bisphosphate metabolic process"
  * Set definition of GO:0033865 to "The chemical reactions and pathways involving a nucleoside bisphosphate, a glycosamine consisting of a base linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on its glycose moiety."
  * Added definition dbxref GOC:mah to GO:0033865
  * Added definition dbxref GOC:pd to GO:0033865
  * Added GO:0033865 to category gosubset_prok
  * Added synonym "nucleoside bisphosphate metabolism" to GO:0033865
  * Changed synonym scope of GO:0033865 from "Related" to "Exact"
  * Copied GO:0033865 to GO:0009117 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033865
* Populated new object GO:0033866 (macro)
  * Changed name of GO:0033866 from "<new term>" to "nucleoside bisphosphate biosynthetic process"
  * Set definition of GO:0033866 to "The chemical reactions and pathways resulting in the formation of a nucleoside bisphosphate, a glycosamine consisting of a base linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on its glycose moiety."
  * Added definition dbxref GOC:mah to GO:0033866
  * Added definition dbxref GOC:pd to GO:0033866
  * Added GO:0033866 to category gosubset_prok
  * Added synonym "nucleoside bisphosphate anabolism" to GO:0033866
  * Changed synonym scope of GO:0033866 from "Related" to "Exact"
  * Added synonym "nucleoside bisphosphate biosynthesis" to GO:0033866
  * Changed synonym scope of GO:0033866 from "Related" to "Exact"
  * Added synonym "nucleoside bisphosphate formation" to GO:0033866
  * Changed synonym scope of GO:0033866 from "Related" to "Exact"
  * Added synonym "nucleoside bisphosphatehate synthesis" to GO:0033866
  * Changed synonym scope of GO:0033866 from "Related" to "Exact"
  * Copied GO:0033866 to GO:0033865 with type OBO_REL:is_a
  * Copied GO:0033866 to GO:0009165 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033866
* Populated new object GO:0033869 (macro)
  * Changed name of GO:0033869 from "<new term>" to "nucleoside bisphosphate catabolic process"
  * Set definition of GO:0033869 to "The chemical reactions and pathways resulting in the breakdown of a nucleoside bisphosphate, a glycosamine consisting of a base linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on its glycose moiety."
  * Added definition dbxref GOC:mah to GO:0033869
  * Added definition dbxref GOC:pd to GO:0033869
  * Added GO:0033869 to category gosubset_prok
  * Added synonym "nucleoside bisphosphate breakdown" to GO:0033869
  * Changed synonym scope of GO:0033869 from "Related" to "Exact"
  * Added synonym "nucleoside bisphosphate catabolism" to GO:0033869
  * Changed synonym scope of GO:0033869 from "Related" to "Exact"
  * Added synonym "nucleoside bisphosphate degradation" to GO:0033869
  * Changed synonym scope of GO:0033869 from "Related" to "Exact"
  * Copied GO:0033869 to GO:0009166 with type OBO_REL:is_a
  * Copied GO:0033869 to GO:0033865 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033869
* Populated new object GO:0033875 (macro)
  * Changed name of GO:0033875 from "<new term>" to "ribonucleoside bisphosphate metabolic process"
  * Set definition of GO:0033875 to "The chemical reactions and pathways involving a ribonucleoside bisphosphate, a glycosamine consisting of a base linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on its glycose moiety."
  * Added definition dbxref GOC:mah to GO:0033875
  * Added definition dbxref GOC:pd to GO:0033875
  * Added GO:0033875 to category gosubset_prok
  * Added synonym "ribonucleoside bisphosphate metabolism" to GO:0033875
  * Changed synonym scope of GO:0033875 from "Related" to "Exact"
  * Copied GO:0033875 to GO:0033865 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033875
* Populated new object GO:0034030 (macro)
  * Changed name of GO:0034030 from "<new term>" to "ribonucleoside bisphosphate biosynthetic process"
  * Set definition of GO:0034030 to "The chemical reactions and pathways resulting in the formation of a ribonucleoside bisphosphate, a glycosamine consisting of a base linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on its glycose moiety."
  * Added definition dbxref GOC:mah to GO:0034030
  * Added definition dbxref GOC:pd to GO:0034030
  * Added GO:0034030 to category gosubset_prok
  * Added synonym "ribonucleoside bisphosphate anabolism" to GO:0034030
  * Changed synonym scope of GO:0034030 from "Related" to "Exact"
  * Added synonym "ribonucleoside bisphosphate biosynthesis" to GO:0034030
  * Changed synonym scope of GO:0034030 from "Related" to "Exact"
  * Added synonym "ribonucleoside bisphosphate formation" to GO:0034030
  * Changed synonym scope of GO:0034030 from "Related" to "Exact"
  * Added synonym "ribonucleoside bisphosphate synthesis" to GO:0034030
  * Changed synonym scope of GO:0034030 from "Related" to "Exact"
  * Copied GO:0034030 to GO:0033866 with type OBO_REL:is_a
  * Copied GO:0034030 to GO:0033875 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034030
* Populated new object GO:0034031 (macro)
  * Changed name of GO:0034031 from "<new term>" to "ribonucleoside bisphosphate catabolic process"
  * Set definition of GO:0034031 to "The chemical reactions and pathways resulting in the breakdown of a ribonucleoside bisphosphate, a glycosamine consisting of a base linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on its glycose moiety."
  * Added definition dbxref GOC:mah to GO:0034031
  * Added definition dbxref GOC:pd to GO:0034031
  * Added GO:0034031 to category gosubset_prok
  * Added synonym "ribonucleoside bisphosphate breakdown" to GO:0034031
  * Changed synonym scope of GO:0034031 from "Related" to "Exact"
  * Added synonym "ribonucleoside bisphosphate catabolism" to GO:0034031
  * Changed synonym scope of GO:0034031 from "Related" to "Exact"
  * Added synonym "ribonucleoside bisphosphate degradation" to GO:0034031
  * Changed synonym scope of GO:0034031 from "Related" to "Exact"
  * Copied GO:0034031 to GO:0033869 with type OBO_REL:is_a
  * Copied GO:0034031 to GO:0033875 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034031
* Populated new object GO:0034032 (macro)
  * Changed name of GO:0034032 from "<new term>" to "purine nucleoside bisphosphate metabolic process"
  * Set definition of GO:0034032 to "The chemical reactions and pathways involving a purine nucleoside bisphosphate, a glycosamine consisting of a purine base linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on its glycose moiety."
  * Added definition dbxref GOC:mah to GO:0034032
  * Added definition dbxref GOC:pd to GO:0034032
  * Added GO:0034032 to category gosubset_prok
  * Added synonym "purine nucleoside bisphosphate metabolism" to GO:0034032
  * Changed synonym scope of GO:0034032 from "Related" to "Exact"
  * Copied GO:0034032 to GO:0033865 with type OBO_REL:is_a
  * Copied GO:0034032 to GO:0006163 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034032
* Populated new object GO:0034033 (macro)
  * Changed name of GO:0034033 from "<new term>" to "purine nucleoside bisphosphate biosynthetic process"
  * Set definition of GO:0034033 to "The chemical reactions and pathways resulting in the formation of a purine nucleoside bisphosphate, a glycosamine consisting of a purine base linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on its glycose moiety."
  * Added definition dbxref GOC:mah to GO:0034033
  * Added definition dbxref GOC:pd to GO:0034033
  * Added GO:0034033 to category gosubset_prok
  * Added synonym "purine nucleoside bisphosphate anabolism" to GO:0034033
  * Changed synonym scope of GO:0034033 from "Related" to "Exact"
  * Added synonym "purine nucleoside bisphosphate biosynthesis" to GO:0034033
  * Changed synonym scope of GO:0034033 from "Related" to "Exact"
  * Added synonym "purine nucleoside bisphosphate formation" to GO:0034033
  * Changed synonym scope of GO:0034033 from "Related" to "Exact"
  * Added synonym "purine nucleoside bisphosphate synthesis" to GO:0034033
  * Changed synonym scope of GO:0034033 from "Related" to "Exact"
  * Copied GO:0034033 to GO:0033866 with type OBO_REL:is_a
  * Copied GO:0034033 to GO:0034032 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034033
* Populated new object GO:0034034 (macro)
  * Changed name of GO:0034034 from "<new term>" to "purine nucleoside bisphosphate catabolic process"
  * Set definition of GO:0034034 to "The chemical reactions and pathways resulting in the breakdown of a purine nucleoside bisphosphate, a glycosamine consisting of a purine base linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on its glycose moiety."
  * Added definition dbxref GOC:mah to GO:0034034
  * Added definition dbxref GOC:pd to GO:0034034
  * Added GO:0034034 to category gosubset_prok
  * Added synonym "purine nucleoside bisphosphate breakdown" to GO:0034034
  * Changed synonym scope of GO:0034034 from "Related" to "Exact"
  * Added synonym "purine nucleoside bisphosphate catabolism" to GO:0034034
  * Changed synonym scope of GO:0034034 from "Related" to "Exact"
  * Added synonym "purine nucleoside bisphosphate degradation" to GO:0034034
  * Changed synonym scope of GO:0034034 from "Related" to "Exact"
  * Copied GO:0034034 to GO:0033869 with type OBO_REL:is_a
  * Copied GO:0034034 to GO:0034032 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034034
* Populated new object GO:0034035 (macro)
  * Changed name of GO:0034035 from "<new term>" to "purine ribonucleoside bisphosphate metabolic process"
  * Set definition of GO:0034035 to "The chemical reactions and pathways involving a ribonucleoside bisphosphate, a glycosamine consisting of a base linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on its glycose moiety."
  * Added definition dbxref GOC:mah to GO:0034035
  * Added definition dbxref GOC:pd to GO:0034035
  * Added GO:0034035 to category gosubset_prok
  * Added synonym "purine ribonucleoside bisphosphate metabolism" to GO:0034035
  * Changed synonym scope of GO:0034035 from "Related" to "Exact"
  * Copied GO:0034035 to GO:0033875 with type OBO_REL:is_a
  * Copied GO:0034035 to GO:0034032 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034035
* Populated new object GO:0034036 (macro)
  * Changed name of GO:0034036 from "<new term>" to "purine ribonucleoside bisphosphate biosynthetic process"
  * Set definition of GO:0034036 to "The chemical reactions and pathways resulting in the formation of a purine ribonucleoside bisphosphate, a glycosamine consisting of a purine base linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on its glycose moiety."
  * Added definition dbxref GOC:mah to GO:0034036
  * Added definition dbxref GOC:pd to GO:0034036
  * Added GO:0034036 to category gosubset_prok
  * Added synonym "purine ribonucleoside bisphosphate anabolism" to GO:0034036
  * Changed synonym scope of GO:0034036 from "Related" to "Exact"
  * Added synonym "purine ribonucleoside bisphosphate biosynthesis" to GO:0034036
  * Changed synonym scope of GO:0034036 from "Related" to "Exact"
  * Added synonym "purine ribonucleoside bisphosphate formation" to GO:0034036
  * Changed synonym scope of GO:0034036 from "Related" to "Exact"
  * Added synonym "purine ribonucleoside bisphosphate synthesis" to GO:0034036
  * Changed synonym scope of GO:0034036 from "Related" to "Exact"
  * Copied GO:0034036 to GO:0034030 with type OBO_REL:is_a
  * Copied GO:0034036 to GO:0034033 with type OBO_REL:is_a
  * Copied GO:0034036 to GO:0034035 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034036
* Populated new object GO:0034037 (macro)
  * Changed name of GO:0034037 from "<new term>" to "purine ribonucleoside bisphosphate catabolic process"
  * Set definition of GO:0034037 to "The chemical reactions and pathways resulting in the breakdown of a purine ribonucleoside bisphosphate, a glycosamine consisting of a purine base linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on its glycose moiety."
  * Added definition dbxref GOC:mah to GO:0034037
  * Added definition dbxref GOC:pd to GO:0034037
  * Added GO:0034037 to category gosubset_prok
  * Added synonym "purine ribonucleoside bisphosphate breakdown" to GO:0034037
  * Changed synonym scope of GO:0034037 from "Related" to "Exact"
  * Added synonym "purine ribonucleoside bisphosphate catabolism" to GO:0034037
  * Changed synonym scope of GO:0034037 from "Related" to "Exact"
  * Added synonym "purine ribonucleoside bisphosphate degradation" to GO:0034037
  * Changed synonym scope of GO:0034037 from "Related" to "Exact"
  * Copied GO:0034037 to GO:0034035 with type OBO_REL:is_a
  * Copied GO:0034037 to GO:0034034 with type OBO_REL:is_a
  * Copied GO:0034037 to GO:0034031 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034037
* Deleted GO:0050427 --OBO_REL:is_a--> GO:0009179
* Copied GO:0050427 to GO:0034035 with type OBO_REL:is_a
* Deleted GO:0050428 --OBO_REL:is_a--> GO:0009180
* Copied GO:0050428 to GO:0034036 with type OBO_REL:is_a
* Copied GO:0050428 to GO:0050427 with type OBO_REL:is_a


From gocvs at genome.Stanford.EDU  Fri Dec  7 21:30:43 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Fri, 7 Dec 2007 21:30:43 -0800 (PST)
Subject: [go-diff] GO update 12/07/2007
Message-ID: <200712080530.VAA14564@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.591 by 5.596

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010484
* Created object of type obo:TERM with id GO:0010485
* Created object of type obo:TERM with id GO:0010486
* Created object of type obo:TERM with id GO:0010487
* Created object of type obo:TERM with id GO:0010488
* Created object of type obo:TERM with id GO:0060182
* Created object of type obo:TERM with id GO:0060183
* Populated new object GO:0010484 (macro)
  * Changed name of GO:0010484 from "<new term>" to "H3 histone acetyltransferase activity"
  * Set definition of GO:0010484 to "Catalysis of the addition of an acetyl group to a histone, specific for histones H3."
  * Added definition dbxref PMID:17877703 to GO:0010484
  * Copied GO:0010484 to GO:0004406 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010484
* Populated new object GO:0010485 (macro)
  * Changed name of GO:0010485 from "<new term>" to "H4 histone acetyltransferase activity"
  * Set definition of GO:0010485 to "Catalysis of the addition of an acetyl group to a histone, specific for histones H4."
  * Added definition dbxref PMID:17877703 to GO:0010485
  * Copied GO:0010485 to GO:0004406 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010485
* Populated new object GO:0010486 (macro)
  * Changed name of GO:0010486 from "<new term>" to "manganese:hydrogen antiporter activity"
  * Set definition of GO:0010486 to "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Mn2+(in) + H+(out) = Mn2+(out) + H+(in)."
  * Added definition dbxref PMID:17559518 to GO:0010486
  * Copied GO:0010486 to GO:0051139 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010486
* Populated new object GO:0010487 (macro)
  * Changed name of GO:0010487 from "<new term>" to "thermospermine synthase activity"
  * Set definition of GO:0010487 to "Catalysis of the reaction: S-adenosylmethioninamine + spermidine = 5'-methylthioadenosine + thermospermine."
  * Added definition dbxref PMID:17560575 to GO:0010487
  * Copied GO:0010487 to GO:0016765 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010487
* Populated new object GO:0010488 (macro)
  * Changed name of GO:0010488 from "<new term>" to "UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity"
  * Set definition of GO:0010488 to "Catalysis of the reaction: UDP-galactose + N-glycan = galactose-beta-1,3-N-glycan + UDP."
  * Added definition dbxref PMID:17630273 to GO:0010488
  * Copied GO:0010488 to GO:0035250 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010488
* Populated new object GO:0060182 (macro)
  * Changed name of GO:0060182 from "<new term>" to "apelin receptor activity"
  * Set definition of GO:0060182 to "Combining with the peptide apelin to initiate a change in cell activity."
  * Added definition dbxref GOC:dph to GO:0060182
  * Copied GO:0060182 to GO:0008528 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0060182
* Populated new object GO:0060183 (macro)
  * Changed name of GO:0060183 from "<new term>" to "apelin receptor signaling pathway"
  * Set definition of GO:0060183 to "The series of molecular signals generated as a consequence of an apelin receptor binding to one of its physiological ligands."
  * Added definition dbxref GOC:dph to GO:0060183
  * Copied GO:0060183 to GO:0007186 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060183
* Deleted GO:0000074 --OBO_REL:is_a--> GO:0051726
* Deleted GO:0000079 --OBO_REL:is_a--> GO:0000074
* Deleted GO:0031991 --OBO_REL:is_a--> GO:0000074
* Deleted GO:0033261 --OBO_REL:is_a--> GO:0000074
* Deleted GO:0008054 --OBO_REL:is_a--> GO:0000074
* Deleted GO:0040020 --OBO_REL:is_a--> GO:0000074
* Deleted GO:0045787 --OBO_REL:is_a--> GO:0000074
* Deleted GO:0007088 --OBO_REL:is_a--> GO:0000074
* Deleted GO:0060154 --OBO_REL:is_a--> GO:0000074
* Deleted GO:0060153 --OBO_REL:is_a--> GO:0000074
* Deleted GO:0007346 --OBO_REL:is_a--> GO:0000074
* Deleted GO:0000320 --OBO_REL:is_a--> GO:0000074
* Deleted GO:0000075 --OBO_REL:is_a--> GO:0000074
* Deleted GO:0045786 --OBO_REL:is_a--> GO:0000074
* Deleted GO:0051445 --OBO_REL:is_a--> GO:0000074
* Destroyed object GO:0000074
* Deleted GO:0000075 --OBO_REL:is_a--> GO:0000074
* Copied GO:0000075 to GO:0051726 with type OBO_REL:is_a
* Deleted GO:0000079 --OBO_REL:is_a--> GO:0000074
* Copied GO:0000079 to GO:0051726 with type OBO_REL:is_a
* Deleted GO:0000320 --OBO_REL:is_a--> GO:0000074
* Copied GO:0000320 to GO:0051726 with type OBO_REL:is_a
* Deleted GO:0007088 --OBO_REL:is_a--> GO:0000074
* Copied GO:0007088 to GO:0051726 with type OBO_REL:is_a
* Changed name of GO:0007346 from "regulation of progression through mitotic cell cycle" to "regulation of mitotic cell cycle"
* Added definition dbxref GOC:dph to GO:0007346
* Added definition dbxref GOC:tb to GO:0007346
* Added synonym "regulation of progression through mitotic cell cycle" to GO:0007346
* Added general dbxref GOC:tb to synonym regulation of progression through mitotic cell cycle of GO:0007346
* Added general dbxref GOC:dph to synonym regulation of progression through mitotic cell cycle of GO:0007346
* Changed synonym scope of GO:0007346 from "Related" to "Exact"
* Deleted GO:0007346 --OBO_REL:is_a--> GO:0000074
* Copied GO:0007346 to GO:0051726 with type OBO_REL:is_a
* Changed name of GO:0007347 from "regulation of progression through preblastoderm mitotic cell cycle" to "regulation of preblastoderm mitotic cell cycle"
* Changed definition of GO:0007347 from "A cell cycle process that modulates the frequency, rate or extent of the progression through the preblastoderm mitotic cell cycle." to "A cell cycle process that modulates the rate or extent of the progression through the preblastoderm mitotic cell cycle."
* Added definition dbxref GOC:dph to GO:0007347
* Added definition dbxref GOC:tb to GO:0007347
* Added synonym "regulation of progression through preblastoderm mitotic cell cycle" to GO:0007347
* Added general dbxref GOC:tb to synonym regulation of progression through preblastoderm mitotic cell cycle of GO:0007347
* Added general dbxref GOC:dph to synonym regulation of progression through preblastoderm mitotic cell cycle of GO:0007347
* Changed synonym scope of GO:0007347 from "Related" to "Exact"
* Deleted GO:0007347 --OBO_REL:is_a--> GO:0022402
* Deleted GO:0007347 --part_of--> GO:0009794
* Deleted GO:0007347 --OBO_REL:is_a--> GO:0050789
* Copied GO:0007347 to GO:0009794 with type OBO_REL:is_a
* Changed name of GO:0007348 from "regulation of progression through syncytial blastoderm mitotic cell cycle" to "regulation of syncytial blastoderm mitotic cell cycle"
* Changed definition of GO:0007348 from "A cell cycle process that modulates the frequency, rate or extent of the progression through the syncytial blastoderm mitotic cell cycle." to "A cell cycle process that modulates the rate or extent of the progression through the syncytial blastoderm mitotic cell cycle."
* Added definition dbxref GOC:dph to GO:0007348
* Added definition dbxref GOC:tb to GO:0007348
* Added synonym "regulation of progression through syncytial blastoderm mitotic cell cycle" to GO:0007348
* Added general dbxref GOC:tb to synonym regulation of progression through syncytial blastoderm mitotic cell cycle of GO:0007348
* Added general dbxref GOC:dph to synonym regulation of progression through syncytial blastoderm mitotic cell cycle of GO:0007348
* Changed synonym scope of GO:0007348 from "Related" to "Exact"
* Deleted GO:0008054 --OBO_REL:is_a--> GO:0000074
* Copied GO:0008054 to GO:0051726 with type OBO_REL:is_a
* Changed name of GO:0009794 from "regulation of progression through embryonic mitotic cell cycle" to "regulation of mitotic cell cycle, embryonic"
* Added definition dbxref GOC:dph to GO:0009794
* Added definition dbxref GOC:tb to GO:0009794
* Added general dbxref GOC:tb to synonym regulation of embryonic mitotic cell cycle of GO:0009794
* Added general dbxref GOC:dph to synonym regulation of embryonic mitotic cell cycle of GO:0009794
* Added synonym "regulation of progression through embryonic mitotic cell cycle" to GO:0009794
* Changed synonym scope of GO:0009794 from "Related" to "Exact"
* Deleted GO:0031991 --OBO_REL:is_a--> GO:0000074
* Copied GO:0031991 to GO:0051726 with type OBO_REL:is_a
* Changed name of GO:0033261 from "regulation of progression through S phase" to "regulation of S phase"
* Changed definition of GO:0033261 from "A cell cycle process that modulates the frequency, rate or extent of the progression through the S phase of the cell cycle." to "A cell cycle process that modulates the rate or extent of the progression through the S phase of the cell cycle."
* Added definition dbxref GOC:dph to GO:0033261
* Added definition dbxref GOC:tb to GO:0033261
* Added synonym "regulation of progression through S phase" to GO:0033261
* Added general dbxref GOC:tb to synonym regulation of progression through S phase of GO:0033261
* Added general dbxref GOC:dph to synonym regulation of progression through S phase of GO:0033261
* Changed synonym scope of GO:0033261 from "Related" to "Exact"
* Deleted GO:0033261 --OBO_REL:is_a--> GO:0000074
* Copied GO:0033261 to GO:0051726 with type OBO_REL:is_a
* Deleted GO:0040020 --OBO_REL:is_a--> GO:0000074
* Copied GO:0040020 to GO:0051726 with type OBO_REL:is_a
* Changed name of GO:0045786 from "negative regulation of progression through cell cycle" to "negative regulation of cell cycle"
* Changed definition of GO:0045786 from "Any process that stops, prevents or reduces the frequency, rate or extent of progression through the cell cycle." to "Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle."
* Added definition dbxref GOC:dph to GO:0045786
* Added definition dbxref GOC:tb to GO:0045786
* Added synonym "negative regulation of progression through cell cycle" to GO:0045786
* Changed synonym scope of GO:0045786 from "Related" to "Exact"
* Deleted GO:0045786 --OBO_REL:is_a--> GO:0000074
* Copied GO:0045786 to GO:0051726 with type OBO_REL:is_a
* Changed name of GO:0045787 from "positive regulation of progression through cell cycle" to "positive regulation of cell cycle"
* Changed definition of GO:0045787 from "Any process that activates or increases the frequency, rate or extent of progression through the cell cycle." to "Any process that activates or increases the rate or extent of progression through the cell cycle."
* Added synonym "positive regulation of progression through cell cycle" to GO:0045787
* Added general dbxref GOC:tb to synonym positive regulation of progression through cell cycle of GO:0045787
* Added general dbxref GOC:dph to synonym positive regulation of progression through cell cycle of GO:0045787
* Changed synonym scope of GO:0045787 from "Related" to "Exact"
* Deleted GO:0045787 --OBO_REL:is_a--> GO:0000074
* Copied GO:0045787 to GO:0051726 with type OBO_REL:is_a
* Changed definition of GO:0045839 from "Any process that stops, prevents or reduces the frequency, rate or extent of mitosis." to "Any process that stops, prevents or reduces the rate or extent of mitosis. Mitosis is the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother."
* Added definition dbxref GOC:dph to GO:0045839
* Added definition dbxref GOC:tb to GO:0045839
* Changed name of GO:0045930 from "negative regulation of progression through mitotic cell cycle" to "negative regulation of mitotic cell cycle"
* Changed definition of GO:0045930 from "Any process that stops, prevents or reduces the frequency, rate or extent of progression through the mitotic cell cycle." to "Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle."
* Added definition dbxref GOC:dph to GO:0045930
* Added definition dbxref GOC:tb to GO:0045930
* Added synonym "negative regulation of progression through mitotic cell cycle" to GO:0045930
* Added general dbxref GOC:tb to synonym negative regulation of progression through mitotic cell cycle of GO:0045930
* Added general dbxref GOC:dph to synonym negative regulation of progression through mitotic cell cycle of GO:0045930
* Changed synonym scope of GO:0045930 from "Related" to "Exact"
* Changed name of GO:0045931 from "positive regulation of progression through mitotic cell cycle" to "positive regulation of mitotic cell cycle"
* Changed definition of GO:0045931 from "Any process that activates or increases the frequency, rate or extent of progression through the mitotic cell cycle." to "Any process that activates or increases the rate or extent of progression through the mitotic cell cycle."
* Added definition dbxref GOC:dph to GO:0045931
* Added definition dbxref GOC:tb to GO:0045931
* Added synonym "positive regulation of progression through mitotic cell cycle" to GO:0045931
* Added general dbxref GOC:tb to synonym positive regulation of progression through mitotic cell cycle of GO:0045931
* Added general dbxref GOC:dph to synonym positive regulation of progression through mitotic cell cycle of GO:0045931
* Changed synonym scope of GO:0045931 from "Related" to "Exact"
* Changed name of GO:0045976 from "negative regulation of progression through embryonic mitotic cell cycle" to "negative regulation of mitotic cell cycle, embryonic"
* Changed definition of GO:0045976 from "Any process that stops, prevents or reduces the frequency, rate or extent of progression through the embryonic mitotic cell cycle." to "Any process that stops, prevents or reduces the rate or extent of progression through the embryonic mitotic cell cycle."
* Added definition dbxref GOC:dph to GO:0045976
* Added definition dbxref GOC:tb to GO:0045976
* Added synonym "negative regulation of embryonic mitotic cell cycle" to GO:0045976
* Added general dbxref GOC:tb to synonym negative regulation of embryonic mitotic cell cycle of GO:0045976
* Added general dbxref GOC:dph to synonym negative regulation of embryonic mitotic cell cycle of GO:0045976
* Changed synonym scope of GO:0045976 from "Related" to "Exact"
* Added synonym "negative regulation of progression through embryonic mitotic cell cycle" to GO:0045976
* Added general dbxref GOC:tb to synonym negative regulation of progression through embryonic mitotic cell cycle of GO:0045976
* Added general dbxref GOC:dph to synonym negative regulation of progression through embryonic mitotic cell cycle of GO:0045976
* Changed synonym scope of GO:0045976 from "Related" to "Exact"
* Changed name of GO:0045977 from "positive regulation of progression through embryonic mitotic cell cycle" to "positive regulation of mitotic cell cycle, embryonic"
* Added definition dbxref GOC:dph to GO:0045977
* Added definition dbxref GOC:tb to GO:0045977
* Added synonym "positive regulation of embryonic mitotic cell cycle" to GO:0045977
* Added general dbxref GOC:tb to synonym positive regulation of embryonic mitotic cell cycle of GO:0045977
* Added general dbxref GOC:dph to synonym positive regulation of embryonic mitotic cell cycle of GO:0045977
* Changed synonym scope of GO:0045977 from "Related" to "Exact"
* Added synonym "positive regulation of progression through embryonic mitotic cell cycle" to GO:0045977
* Added general dbxref GOC:tb to synonym positive regulation of progression through embryonic mitotic cell cycle of GO:0045977
* Added general dbxref GOC:dph to synonym positive regulation of progression through embryonic mitotic cell cycle of GO:0045977
* Changed synonym scope of GO:0045977 from "Related" to "Exact"
* Changed name of GO:0046001 from "negative regulation of progression through preblastoderm mitotic cell cycle" to "negative regulation of preblastoderm mitotic cell cycle"
* Changed definition of GO:0046001 from "Any process that stops, prevents or reduces the frequency, rate or extent of progression through the preblastoderm mitotic cell cycle." to "Any process that stops, prevents or reduces the rate or extent of progression through the preblastoderm mitotic cell cycle."
* Added definition dbxref GOC:dph to GO:0046001
* Added definition dbxref GOC:tb to GO:0046001
* Added synonym "negative regulation of progression through preblastoderm mitotic cell cycle" to GO:0046001
* Added general dbxref GOC:tb to synonym negative regulation of progression through preblastoderm mitotic cell cycle of GO:0046001
* Added general dbxref GOC:dph to synonym negative regulation of progression through preblastoderm mitotic cell cycle of GO:0046001
* Changed synonym scope of GO:0046001 from "Related" to "Exact"
* Changed name of GO:0046002 from "positive regulation of progression through preblastoderm mitotic cell cycle" to "positive regulation of preblastoderm mitotic cell cycle"
* Changed definition of GO:0046002 from "Any process that activates or increases the frequency, rate or extent of progression through the preblastoderm mitotic cell cycle." to "Any process that activates or increases the rate or extent of progression through the preblastoderm mitotic cell cycle."
* Added definition dbxref GOC:dph to GO:0046002
* Added definition dbxref GOC:tb to GO:0046002
* Added synonym "positive regulation of progression through preblastoderm mitotic cell cycle" to GO:0046002
* Added general dbxref GOC:tb to synonym positive regulation of progression through preblastoderm mitotic cell cycle of GO:0046002
* Added general dbxref GOC:dph to synonym positive regulation of progression through preblastoderm mitotic cell cycle of GO:0046002
* Changed synonym scope of GO:0046002 from "Related" to "Exact"
* Changed name of GO:0046003 from "negative regulation of progression through syncytial blastoderm mitotic cell cycle" to "negative regulation of syncytial blastoderm mitotic cell cycle"
* Changed definition of GO:0046003 from "Any process that stops, prevents or reduces the frequency, rate or extent of progression through the syncytial blastoderm mitotic cell cycle." to "Any process that stops, prevents or reduces the rate or extent of progression through the syncytial blastoderm mitotic cell cycle."
* Added definition dbxref GOC:dph to GO:0046003
* Added definition dbxref GOC:tb to GO:0046003
* Added synonym "negative regulation of progression through syncytial blastoderm mitotic cell cycle" to GO:0046003
* Added general dbxref GOC:tb to synonym negative regulation of progression through syncytial blastoderm mitotic cell cycle of GO:0046003
* Added general dbxref GOC:dph to synonym negative regulation of progression through syncytial blastoderm mitotic cell cycle of GO:0046003
* Changed synonym scope of GO:0046003 from "Related" to "Exact"
* Changed name of GO:0046004 from "positive regulation of progression through syncytial blastoderm mitotic cell cycle" to "positive regulation of syncytial blastoderm mitotic cell cycle"
* Changed definition of GO:0046004 from "Any process that activates or increases the frequency, rate or extent of progression through the syncytial blastoderm mitotic cell cycle." to "Any process that activates or increases the rate or extent of progression through the syncytial blastoderm mitotic cell cycle."
* Added definition dbxref GOC:dph to GO:0046004
* Added definition dbxref GOC:tb to GO:0046004
* Added synonym "positive regulation of progression through syncytial blastoderm mitotic cell cycle" to GO:0046004
* Added general dbxref GOC:tb to synonym positive regulation of progression through syncytial blastoderm mitotic cell cycle of GO:0046004
* Added general dbxref GOC:dph to synonym positive regulation of progression through syncytial blastoderm mitotic cell cycle of GO:0046004
* Changed synonym scope of GO:0046004 from "Related" to "Exact"
* Changed name of GO:0051445 from "regulation of progression through meiotic cell cycle" to "regulation of meiotic cell cycle"
* Changed definition of GO:0051445 from "Any process that modulates the rate or extent of progression through the mitotic cell cycle." to "Any process that modulates the rate or extent of progression through the meiotic cell cycle."
* Added definition dbxref GOC:dph to GO:0051445
* Added definition dbxref GOC:tb to GO:0051445
* Added synonym "regulation of progression through meiotic cell cycle" to GO:0051445
* Added general dbxref GOC:tb to synonym regulation of progression through meiotic cell cycle of GO:0051445
* Added general dbxref GOC:dph to synonym regulation of progression through meiotic cell cycle of GO:0051445
* Changed synonym scope of GO:0051445 from "Related" to "Exact"
* Deleted GO:0051445 --OBO_REL:is_a--> GO:0000074
* Copied GO:0051445 to GO:0051726 with type OBO_REL:is_a
* Changed name of GO:0051446 from "positive regulation of progression through meiotic cell cycle" to "positive regulation of meiotic cell cycle"
* Added definition dbxref GOC:dph to GO:0051446
* Added definition dbxref GOC:tb to GO:0051446
* Added synonym "positive regulation of progression through meiotic cell cycle" to GO:0051446
* Added general dbxref GOC:tb to synonym positive regulation of progression through meiotic cell cycle of GO:0051446
* Added general dbxref GOC:dph to synonym positive regulation of progression through meiotic cell cycle of GO:0051446
* Changed synonym scope of GO:0051446 from "Related" to "Exact"
* Changed name of GO:0051447 from "negative regulation of progression through meiotic cell cycle" to "negative regulation of meiotic cell cycle"
* Changed definition of GO:0051447 from "Any process that stops, prevents or reduces the frequency, rate or extent of progression through the meiotic cell cycle." to "Any process that stops, prevents or reduces the rate or extent of progression through the meiotic cell cycle."
* Added definition dbxref GOC:dph to GO:0051447
* Added definition dbxref GOC:tb to GO:0051447
* Added synonym "negative regulation of progression through meiotic cell cycle" to GO:0051447
* Added general dbxref GOC:tb to synonym negative regulation of progression through meiotic cell cycle of GO:0051447
* Added general dbxref GOC:dph to synonym negative regulation of progression through meiotic cell cycle of GO:0051447
* Changed synonym scope of GO:0051447 from "Related" to "Exact"
* added secondary id GO:0000074 to GO:0051726
* Changed definition of GO:0051726 from "A cell cycle process that modulates the rate, extent or mode of the cell cycle." to "Any process that modulates the rate or extent of progression through the cell cycle."
* Added definition dbxref GOC:dph to GO:0051726
* Added definition dbxref GOC:tb to GO:0051726
* Added general dbxref Reactome:156678 to GO:0051726
* Added general dbxref Reactome:156699 to GO:0051726
* Added general dbxref Reactome:156711 to GO:0051726
* Added general dbxref Reactome:162657 to GO:0051726
* Added general dbxref Reactome:204139 to GO:0051726
* Added general dbxref Reactome:209045 to GO:0051726
* Added general dbxref Reactome:209050 to GO:0051726
* Added general dbxref Reactome:211608 to GO:0051726
* Added general dbxref Reactome:213123 to GO:0051726
* Added general dbxref Reactome:218715 to GO:0051726
* Added general dbxref Reactome:218726 to GO:0051726
* Added general dbxref Reactome:221382 to GO:0051726
* Added general dbxref Reactome:222877 to GO:0051726
* Added general dbxref Reactome:227596 to GO:0051726
* Added general dbxref Reactome:230018 to GO:0051726
* Added general dbxref Reactome:235842 to GO:0051726
* Added general dbxref Reactome:235853 to GO:0051726
* Added general dbxref Reactome:238231 to GO:0051726
* Added general dbxref Reactome:239383 to GO:0051726
* Added general dbxref Reactome:243028 to GO:0051726
* Added general dbxref Reactome:243033 to GO:0051726
* Added general dbxref Reactome:244651 to GO:0051726
* Added general dbxref Reactome:245640 to GO:0051726
* Added general dbxref Reactome:248176 to GO:0051726
* Added general dbxref Reactome:248181 to GO:0051726
* Added general dbxref Reactome:249585 to GO:0051726
* Added general dbxref Reactome:250281 to GO:0051726
* Added general dbxref Reactome:251600 to GO:0051726
* Added general dbxref Reactome:252387 to GO:0051726
* Added general dbxref Reactome:253031 to GO:0051726
* Added general dbxref Reactome:254679 to GO:0051726
* Added general dbxref Reactome:255542 to GO:0051726
* Added general dbxref Reactome:256281 to GO:0051726
* Added general dbxref Reactome:257921 to GO:0051726
* Added general dbxref Reactome:258917 to GO:0051726
* Added general dbxref Reactome:259656 to GO:0051726
* Added general dbxref Reactome:261512 to GO:0051726
* Added general dbxref Reactome:262291 to GO:0051726
* Added general dbxref Reactome:264389 to GO:0051726
* Added general dbxref Reactome:265239 to GO:0051726
* Added general dbxref Reactome:267430 to GO:0051726
* Added general dbxref Reactome:267435 to GO:0051726
* Added general dbxref Reactome:268364 to GO:0051726
* Added general dbxref Reactome:280849 to GO:0051726
* Added general dbxref Reactome:282764 to GO:0051726
* Added general dbxref Reactome:285431 to GO:0051726
* Added general dbxref Reactome:285436 to GO:0051726
* Added general dbxref Reactome:286566 to GO:0051726
* Added synonym "cell cycle regulator" to GO:0051726
* Added synonym "control of cell cycle progression" to GO:0051726
* Changed synonym scope of GO:0051726 from "Related" to "Exact"
* Added synonym "modulation of cell cycle progression" to GO:0051726
* Changed synonym scope of GO:0051726 from "Related" to "Exact"
* Added synonym "regulation of cell cycle progression" to GO:0051726
* Changed synonym scope of GO:0051726 from "Related" to "Exact"
* Added synonym "regulation of progression through cell cycle" to GO:0051726
* Changed synonym scope of GO:0051726 from "Related" to "Exact"
* Added synonym "tumor suppressor" to GO:0051726
* Changed definition of GO:0060096 from "The regulated release of serotonin by a cell or group of cells. During this process,serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine neurotransmitter synthesised in serotonergic neurons in the central nervous system and enterochromaffin cells in the gastrointestinal tract." to "The regulated release of serotonin by a cell or group of cells, in which released serotonin acts as a neurotransmitter."
* Deleted GO:0060153 --OBO_REL:is_a--> GO:0000074
* Copied GO:0060153 to GO:0051726 with type OBO_REL:is_a
* Deleted GO:0060154 --OBO_REL:is_a--> GO:0000074
* Copied GO:0060154 to GO:0051726 with type OBO_REL:is_a


From gocvs at genome.Stanford.EDU  Mon Dec 10 21:30:44 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Mon, 10 Dec 2007 21:30:44 -0800 (PST)
Subject: [go-diff] GO update 12/10/2007
Message-ID: <200712110530.VAA05751@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.596 by 5.604

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010489
* Created object of type obo:TERM with id GO:0010490
* Created object of type obo:TERM with id GO:0010491
* Created object of type obo:TERM with id GO:0010492
* Created object of type obo:TERM with id GO:0010493
* Created object of type obo:TERM with id GO:0060184
* Populated new object GO:0010489 (macro)
  * Changed name of GO:0010489 from "<new term>" to "UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity"
  * Set definition of GO:0010489 to "Catalysis of the reaction: UDP-4-keto-6-deoxyglucose -> UDP-4-keto-rhamnose."
  * Added definition dbxref GOC:tair_curators to GO:0010489
  * Added definition dbxref PMID:17190829 to GO:0010489
  * Copied GO:0010489 to GO:0016857 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010489
* Populated new object GO:0010490 (macro)
  * Changed name of GO:0010490 from "<new term>" to "UDP-4-keto-rhamnose-4-keto-reductase activity"
  * Set definition of GO:0010490 to "Catalysis of the reaction: UDP-4-keto-rhamnose + NADPH -> UDP-rhamnose
+ NADP+."
  * Added definition dbxref GOC:tair_curators to GO:0010490
  * Added definition dbxref PMID:17190829 to GO:0010490
  * Copied GO:0010490 to GO:0016616 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010490
* Populated new object GO:0010491 (macro)
  * Changed name of GO:0010491 from "<new term>" to "UTP:arabinose-1-phosphate uridylyltransferase activity"
  * Set definition of GO:0010491 to "Catalysis of the reaction: alpha-L-arabinose 1-phosphate + UTP = UDP-L-arabinose + diphosphate."
  * Added definition dbxref PMID:17341835 to GO:0010491
  * Copied GO:0010491 to GO:0051748 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010491
* Populated new object GO:0010492 (macro)
  * Changed name of GO:0010492 from "<new term>" to "maintenance of shoot apical meristem identity"
  * Set definition of GO:0010492 to "The processes involved in maintaining the identity of the shoot apical meristem. Identity is considered to be the aggregate of characteristics by which a structure is recognized."
  * Added definition dbxref PMID:17461786 to GO:0010492
  * Copied GO:0010492 to GO:0010074 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010492
* Populated new object GO:0010493 (macro)
  * Changed name of GO:0010493 from "<new term>" to "Lewis a epitope biosynthetic process"
  * Set definition of GO:0010493 to "The chemical reactions and pathways resulting in the formation of a K antigen, a capsular polysaccharide antigen carried on the surface of bacterial capsules that masks somatic (O) antigens."
  * Added definition dbxref PMID:17630273 to GO:0010493
  * Added synonym "LE A biosynthetic process" to GO:0010493
  * Copied GO:0010493 to GO:0033692 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010493
* Populated new object GO:0060184 (macro)
  * Changed name of GO:0060184 from "<new term>" to "cell cycle switching"
  * Set definition of GO:0060184 to "The process by which a cell switches cell cycle mode."
  * Added definition dbxref GOC:dph to GO:0060184
  * Added definition dbxref GOC:kmv to GO:0060184
  * Added definition dbxref GOC:tb to GO:0060184
  * Copied GO:0060184 to GO:0022402 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060184
* Changed definition of GO:0001787 from "The rapid expansion of a natural killer cell population by cell division." to "The expansion of a natural killer cell population by cell division."
* Changed definition of GO:0001935 from "The multiplication or reproduction of endothelial cells, resulting in the rapid expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium." to "The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium."
* Changed definition of GO:0002043 from "The multiplication or reproduction of blood vessel endothelial cells, resulting in the rapid expansion of a cell population during sprouting angiogenesis." to "The multiplication or reproduction of blood vessel endothelial cells, resulting in the expansion of a cell population during sprouting angiogenesis."
* Changed definition of GO:0002309 from "The rapid expansion of a T cell population by cell division during an immune response." to "The expansion of a T cell population by cell division during an immune response."
* Changed definition of GO:0002310 from "The rapid expansion of an alpha-beta T cell population by cell division during an immune response." to "The expansion of an alpha-beta T cell population by cell division during an immune response."
* Changed definition of GO:0002311 from "The rapid expansion of an gamma-delta T cell population by cell division during an immune response." to "The expansion of an gamma-delta T cell population by cell division during an immune response."
* Changed definition of GO:0002322 from "The rapid expansion of a B cell population by cell division following B cell activation during an immune response." to "The expansion of a B cell population by cell division following B cell activation during an immune response."
* Changed definition of GO:0002324 from "The rapid expansion of a natural killer cell population by cell division during an immune response." to "The expansion of a natural killer cell population by cell division during an immune response."
* Changed definition of GO:0002359 from "The rapid expansion of a B-1 B cell by cell division. Follows B cell activation." to "The expansion of a B-1 B cell by cell division. Follows B cell activation."
* Changed definition of GO:0007371 from "The rgionalization process by which the area where the ventral furrow will begin invagination is specified." to "The regionalization process by which the area where the ventral furrow will begin invagination is specified."
* Changed definition of GO:0007405 from "The rapid expansion of a neuroblast population by cell division. Neuroblasts are embryonic cells that develop into nerve cells or neurons." to "The expansion of a neuroblast population by cell division. Neuroblasts are embryonic cells that develop into nerve cells or neurons."
* Changed definition of GO:0008283 from "The multiplication or reproduction of cells, resulting in the rapid expansion of a cell population." to "The multiplication or reproduction of cells, resulting in the expansion of a cell population."
* Changed definition of GO:0014009 from "The multiplication or reproduction of glial cells by cell division, resulting in the rapid expansion of their population. Glial cells exist throughout the nervous system, and include Schwann cells, astrocytes, and oligodendrocytes among others." to "The multiplication or reproduction of glial cells by cell division, resulting in the expansion of their population. Glial cells exist throughout the nervous system, and include Schwann cells, astrocytes, and oligodendrocytes among others."
* Changed definition of GO:0014010 from "The multiplication or reproduction of Schwann cells, resulting in the rapid expansion of their population. Schwann cells are a type of glial cell in the peripheral nervous system." to "The multiplication or reproduction of Schwann cells, resulting in the expansion of their population. Schwann cells are a type of glial cell in the peripheral nervous system."
* Changed definition of GO:0014011 from "The multiplication or reproduction of Schwann cells by cell division, resulting in the rapid expansion of their population in response to an axonal lesion. The newly generated Schwann cells support subsequent axon regeneration in the peripheral nervous system." to "The multiplication or reproduction of Schwann cells by cell division, resulting in the expansion of their population in response to an axonal lesion. The newly generated Schwann cells support subsequent axon regeneration in the peripheral nervous system."
* Changed definition of GO:0014841 from "The multiplication or reproduction of satellite cells, resulting in the rapid expansion of the cell population. Satellite cells are quiescent cells that are located between the basal lamina and the plasmalemma of the muscle fibre, which are the main contributors to postnatal muscle growth. In adult muscle, satellite cells become activated to divide and differentiate in response to muscle damage." to "The multiplication or reproduction of satellite cells, resulting in the expansion of the cell population. Satellite cells are quiescent cells that are located between the basal lamina and the plasmalemma of the muscle fibre, which are the main contributors to postnatal muscle growth. In adult muscle, satellite cells become activated to divide and differentiate in response to muscle damage."
* Changed definition of GO:0014844 from "The multiplication or reproduction of myoblast cells, resulting in the rapid expansion of the cell population. This occurs as part of skeletal muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers." to "The multiplication or reproduction of myoblast cells, resulting in the expansion of the cell population. This occurs as part of skeletal muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers."
* Changed definition of GO:0014855 from "The multiplication or reproduction of striated muscle cells, resulting in the rapid expansion of a cell population. Striated muscles contain fibers that are divided by transverse bands into striations, and cardiac and skeletal muscle are types of striated muscle." to "The multiplication or reproduction of striated muscle cells, resulting in the expansion of a cell population. Striated muscles contain fibers that are divided by transverse bands into striations, and cardiac and skeletal muscle are types of striated muscle."
* Changed definition of GO:0014856 from "The multiplication or reproduction of skeletal muscle cells, resulting in the rapid expansion of a cell population." to "The multiplication or reproduction of skeletal muscle cells, resulting in the expansion of a cell population."
* Changed definition of GO:0021534 from "The multiplication or reproduction of cells, resulting in the rapid expansion of a cell population in the hindbrain." to "The multiplication or reproduction of cells, resulting in the expansion of a cell population in the hindbrain."
* Changed definition of GO:0021923 from "The multiplication or reproduction of cells, resulting in the rapid expansion of a cell population in the hindbrain region that is adjacent to the ventricular cavity." to "The multiplication or reproduction of cells, resulting in the expansion of a cell population in the hindbrain region that is adjacent to the ventricular cavity."
* Changed definition of GO:0021924 from "The multiplication or reproduction of neuroblasts resulting in the rapid expansion of a cell population in the external granule layer of the hindbrain. The external granule layer is the layer that originates from the rostral half of the rhombic lip in the first rhombomere." to "The multiplication or reproduction of neuroblasts resulting in the expansion of a cell population in the external granule layer of the hindbrain. The external granule layer is the layer that originates from the rostral half of the rhombic lip in the first rhombomere."
* Changed definition of GO:0021992 from "The process of rapid expansion of cell numbers in the neural plate due to cell division of progenitor cells preferentially in the rostrocaudal direction, resulting in the elongation of the tissue." to "The process of expansion of cell numbers in the neural plate due to cell division of progenitor cells preferentially in the rostrocaudal direction, resulting in the elongation of the tissue."
* Changed definition of GO:0022012 from "The multiplication or reproduction of subpallium cells in the forebrain, resulting in the rapid expansion of a cell population." to "The multiplication or reproduction of subpallium cells in the forebrain, resulting in the expansion of a cell population."
* Changed definition of GO:0022013 from "The multiplication or reproduction of pallium cells in the forebrain, resulting in the rapid expansion of the cell population." to "The multiplication or reproduction of pallium cells in the forebrain, resulting in the expansion of the cell population."
* Changed definition of GO:0022018 from "The multiplication or reproduction of lateral ganglionic eminence cells, resulting in the rapid expansion of the cell population." to "The multiplication or reproduction of lateral ganglionic eminence cells, resulting in the expansion of the cell population."
* Changed definition of GO:0022019 from "The multiplication or reproduction of dorsal lateral ganglionic eminence cells, resulting in the rapid expansion of the cell population." to "The multiplication or reproduction of dorsal lateral ganglionic eminence cells, resulting in the expansion of the cell population."
* Changed definition of GO:0022020 from "The multiplication or reproduction of medial ganglionic eminence cells, resulting in the rapid expansion of a cell population." to "The multiplication or reproduction of medial ganglionic eminence cells, resulting in the expansion of a cell population."
* Changed definition of GO:0022021 from "The multiplication or reproduction of caudal ganglionic eminence cells, resulting in the rapid expansion of a cell population." to "The multiplication or reproduction of caudal ganglionic eminence cells, resulting in the expansion of a cell population."
* Changed definition of GO:0022022 from "The multiplication or reproduction of septal cells, resulting in the rapid expansion of a cell population." to "The multiplication or reproduction of septal cells, resulting in the expansion of a cell population."
* Changed definition of GO:0022032 from "The multiplication or reproduction of telencephalon oligodendrocyte cells, resulting in the rapid expansion of a cell population." to "The multiplication or reproduction of telencephalon oligodendrocyte cells, resulting in the expansion of a cell population."
* Changed definition of GO:0022034 from "The multiplication or reproduction of rhombomere cells, resulting in the rapid expansion of the cell population." to "The multiplication or reproduction of rhombomere cells, resulting in the expansion of the cell population."
* Changed definition of GO:0032943 from "The rapid expansion of a mononuclear cell population by cell division. A mononuclear cell is a leukocyte with a single non-segmented nucleus in the mature form." to "The expansion of a mononuclear cell population by cell division. A mononuclear cell is a leukocyte with a single non-segmented nucleus in the mature form."
* Changed definition of GO:0033002 from "The rapid expansion of a muscle cell population by cell division." to "The expansion of a muscle cell population by cell division."
* Changed definition of GO:0033079 from "The rapid expansion of an immature T cell population by cell division." to "The expansion of an immature T cell population by cell division."
* Changed definition of GO:0033080 from "The rapid expansion of an immature T cell population by cell division in the thymus." to "The expansion of an immature T cell population by cell division in the thymus."
* Changed definition of GO:0033278 from "The multiplication or reproduction of cells, resulting in the rapid expansion of a cell population in the midbrain." to "The multiplication or reproduction of cells, resulting in the expansion of a cell population in the midbrain."
* Changed definition of GO:0033598 from "The multiplication or reproduction of mammary gland epithelial cells, resulting in the rapid expansion of a cell population. Mammary gland epithelial cells make up the covering of surfaces of the mammary gland. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk." to "The multiplication or reproduction of mammary gland epithelial cells, resulting in the expansion of a cell population. Mammary gland epithelial cells make up the covering of surfaces of the mammary gland. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk."
* Changed definition of GO:0033687 from "The multiplication or reproduction of osteoblasts, resulting in the rapid expansion of an osteoblast cell population. An osteoblast is a bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." to "The multiplication or reproduction of osteoblasts, resulting in the expansion of an osteoblast cell population. An osteoblast is a bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone."
* Changed definition of GO:0035172 from "The multiplication or reproduction of hemocytes, resulting in the rapid expansion of the cell population. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen." to "The multiplication or reproduction of hemocytes, resulting in the expansion of the cell population. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen."
* Changed definition of GO:0042098 from "The rapid expansion of a T cell population by cell division. Follows T cell activation." to "The expansion of a T cell population by cell division. Follows T cell activation."
* Changed definition of GO:0042100 from "The rapid expansion of a B cell population by cell division. Follows B cell activation." to "The expansion of a B cell population by cell division. Follows B cell activation."
* Changed definition of GO:0043616 from "The multiplication or reproduction of keratinocytes, resulting in the rapid expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin." to "The multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin."
* Changed definition of GO:0046630 from "The rapid expansion of a gamma-delta T cell population by cell division." to "The expansion of a gamma-delta T cell population by cell division."
* Changed definition of GO:0046633 from "The rapid expansion of an alpha-beta T cell population by cell division." to "The expansion of an alpha-beta T cell population by cell division."
* Changed definition of GO:0046651 from "The rapid expansion of a lymphocyte population by cell division." to "The expansion of a lymphocyte population by cell division."
* Changed definition of GO:0048144 from "The multiplication or reproduction of fibroblast cells, resulting in the rapid expansion of the fibroblast population." to "The multiplication or reproduction of fibroblast cells, resulting in the expansion of the fibroblast population."
* Added synonym "tapetum morphogenesis" to GO:0048655
* Added general dbxref GOC:tb to synonym tapetum morphogenesis of GO:0048655
* Changed synonym scope of GO:0048655 from "Related" to "Exact"
* Added synonym "tapetum formation" to GO:0048656
* Added general dbxref GOC:tb to synonym tapetum formation of GO:0048656
* Changed synonym scope of GO:0048656 from "Related" to "Exact"
* Added synonym "tapetum development" to GO:0048658
* Added general dbxref GOC:tb to synonym tapetum development of GO:0048658
* Changed synonym scope of GO:0048658 from "Related" to "Exact"
* Changed definition of GO:0048659 from "The multiplication or reproduction of smooth muscle cells, resulting in the rapid expansion of a cell population." to "The multiplication or reproduction of smooth muscle cells, resulting in the expansion of a cell population."
* Changed definition of GO:0050673 from "The multiplication or reproduction of epithelial cells, resulting in the rapid expansion of a cell population. Epithelial cells make up the epithelium, the covering of internal and external surfaces of the body, including the lining of vessels and other small cavities. It consists of cells joined by small amounts of cementing substances." to "The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population. Epithelial cells make up the epithelium, the covering of internal and external surfaces of the body, including the lining of vessels and other small cavities. It consists of cells joined by small amounts of cementing substances."
* Changed definition of GO:0050674 from "The multiplication or reproduction of urothelial cells, resulting in the rapid expansion of a cell population. Urothelial cells make up a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria." to "The multiplication or reproduction of urothelial cells, resulting in the expansion of a cell population. Urothelial cells make up a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria."
* Changed definition of GO:0050798 from "The rapid expansion of a T cell population following activation by an antigenic stimulus." to "The expansion of a T cell population following activation by an antigenic stimulus."
* Added definition dbxref GOC:dph to GO:0050798
* Changed definition of GO:0051450 from "The multiplication or reproduction of myoblasts, resulting in the rapid expansion of a myoblast cell population. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers." to "The multiplication or reproduction of myoblasts, resulting in the expansion of a myoblast cell population. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers."
* Deleted GO:0051726 --OBO_REL:is_a--> GO:0022402
* Deleted GO:0051727 --OBO_REL:is_a--> GO:0051726
* Copied GO:0051727 to GO:0060184 with type OBO_REL:is_a
* Deleted GO:0051728 --OBO_REL:is_a--> GO:0051726
* Copied GO:0051728 to GO:0060184 with type OBO_REL:is_a
* Changed definition of GO:0060011 from "The multiplication or reproduction of Sertoli cells, resulting in the rapid expansion of the Sertoli cell population. A Sertoli cell is a supporting cell projecting inward from the basement membrane of seminiferous tubules." to "The multiplication or reproduction of Sertoli cells, resulting in the expansion of the Sertoli cell population. A Sertoli cell is a supporting cell projecting inward from the basement membrane of seminiferous tubules."
* Changed definition of GO:0060038 from "The rapid expansion of a cardiac muscle cell population by cell division." to "The expansion of a cardiac muscle cell population by cell division."


From gocvs at genome.Stanford.EDU  Tue Dec 11 21:30:45 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Tue, 11 Dec 2007 21:30:45 -0800 (PST)
Subject: [go-diff] GO update 12/11/2007
Message-ID: <200712120530.VAA15181@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.604 by 5.608

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010494
* Created object of type obo:TERM with id GO:0033878
* Created object of type obo:TERM with id GO:0033879
* Created object of type obo:TERM with id GO:0033880
* Created object of type obo:TERM with id GO:0033881
* Created object of type obo:TERM with id GO:0033882
* Created object of type obo:TERM with id GO:0033883
* Created object of type obo:TERM with id GO:0033884
* Created object of type obo:TERM with id GO:0033885
* Created object of type obo:TERM with id GO:0033886
* Created object of type obo:TERM with id GO:0033887
* Created object of type obo:TERM with id GO:0033888
* Created object of type obo:TERM with id GO:0033889
* Created object of type obo:TERM with id GO:0033890
* Created object of type obo:TERM with id GO:0033891
* Created object of type obo:TERM with id GO:0033892
* Created object of type obo:TERM with id GO:0033893
* Created object of type obo:TERM with id GO:0033894
* Created object of type obo:TERM with id GO:0033895
* Created object of type obo:TERM with id GO:0033896
* Created object of type obo:TERM with id GO:0033897
* Created object of type obo:TERM with id GO:0033898
* Created object of type obo:TERM with id GO:0033899
* Created object of type obo:TERM with id GO:0033900
* Created object of type obo:TERM with id GO:0033901
* Created object of type obo:TERM with id GO:0033902
* Created object of type obo:TERM with id GO:0033903
* Created object of type obo:TERM with id GO:0033904
* Created object of type obo:TERM with id GO:0033905
* Created object of type obo:TERM with id GO:0033906
* Created object of type obo:TERM with id GO:0033907
* Created object of type obo:TERM with id GO:0033908
* Created object of type obo:TERM with id GO:0033909
* Created object of type obo:TERM with id GO:0033910
* Created object of type obo:TERM with id GO:0033911
* Created object of type obo:TERM with id GO:0033912
* Created object of type obo:TERM with id GO:0033913
* Created object of type obo:TERM with id GO:0033914
* Created object of type obo:TERM with id GO:0033915
* Created object of type obo:TERM with id GO:0033916
* Created object of type obo:TERM with id GO:0033917
* Created object of type obo:TERM with id GO:0033918
* Created object of type obo:TERM with id GO:0033919
* Created object of type obo:TERM with id GO:0033920
* Created object of type obo:TERM with id GO:0033921
* Created object of type obo:TERM with id GO:0033922
* Created object of type obo:TERM with id GO:0033923
* Created object of type obo:TERM with id GO:0033924
* Created object of type obo:TERM with id GO:0033925
* Created object of type obo:TERM with id GO:0033926
* Created object of type obo:TERM with id GO:0033927
* Created object of type obo:TERM with id GO:0033928
* Created object of type obo:TERM with id GO:0033929
* Created object of type obo:TERM with id GO:0033930
* Created object of type obo:TERM with id GO:0033931
* Created object of type obo:TERM with id GO:0033932
* Created object of type obo:TERM with id GO:0033933
* Created object of type obo:TERM with id GO:0033934
* Created object of type obo:TERM with id GO:0033935
* Created object of type obo:TERM with id GO:0033936
* Created object of type obo:TERM with id GO:0033937
* Created object of type obo:TERM with id GO:0033938
* Created object of type obo:TERM with id GO:0033939
* Created object of type obo:TERM with id GO:0033940
* Created object of type obo:TERM with id GO:0033941
* Created object of type obo:TERM with id GO:0033942
* Created object of type obo:TERM with id GO:0033943
* Created object of type obo:TERM with id GO:0033944
* Created object of type obo:TERM with id GO:0033945
* Created object of type obo:TERM with id GO:0033946
* Created object of type obo:TERM with id GO:0033947
* Created object of type obo:TERM with id GO:0033948
* Created object of type obo:TERM with id GO:0033949
* Created object of type obo:TERM with id GO:0033950
* Created object of type obo:TERM with id GO:0033951
* Created object of type obo:TERM with id GO:0033952
* Created object of type obo:TERM with id GO:0033953
* Created object of type obo:TERM with id GO:0033954
* Created object of type obo:TERM with id GO:0033956
* Created object of type obo:TERM with id GO:0033957
* Created object of type obo:TERM with id GO:0033958
* Created object of type obo:TERM with id GO:0033959
* Created object of type obo:TERM with id GO:0033960
* Created object of type obo:TERM with id GO:0033961
* Created object of type obo:TERM with id GO:0033963
* Created object of type obo:TERM with id GO:0033964
* Created object of type obo:TERM with id GO:0033965
* Created object of type obo:TERM with id GO:0033966
* Created object of type obo:TERM with id GO:0033968
* Created object of type obo:TERM with id GO:0033969
* Created object of type obo:TERM with id GO:0033970
* Created object of type obo:TERM with id GO:0033971
* Created object of type obo:TERM with id GO:0033972
* Created object of type obo:TERM with id GO:0033973
* Created object of type obo:TERM with id GO:0033974
* Created object of type obo:TERM with id GO:0033975
* Created object of type obo:TERM with id GO:0033976
* Created object of type obo:TERM with id GO:0033977
* Created object of type obo:TERM with id GO:0033978
* Created object of type obo:TERM with id GO:0033980
* Created object of type obo:TERM with id GO:0033981
* Created object of type obo:TERM with id GO:0033982
* Created object of type obo:TERM with id GO:0033983
* Created object of type obo:TERM with id GO:0033984
* Created object of type obo:TERM with id GO:0033987
* Created object of type obo:TERM with id GO:0033988
* Created object of type obo:TERM with id GO:0033989
* Created object of type obo:TERM with id GO:0033990
* Created object of type obo:TERM with id GO:0033991
* Created object of type obo:TERM with id GO:0033992
* Created object of type obo:TERM with id GO:0033994
* Created object of type obo:TERM with id GO:0033995
* Created object of type obo:TERM with id GO:0033996
* Created object of type obo:TERM with id GO:0033997
* Created object of type obo:TERM with id GO:0033998
* Created object of type obo:TERM with id GO:0033999
* Created object of type obo:TERM with id GO:0034000
* Created object of type obo:TERM with id GO:0034001
* Created object of type obo:TERM with id GO:0034002
* Created object of type obo:TERM with id GO:0034003
* Created object of type obo:TERM with id GO:0034004
* Created object of type obo:TERM with id GO:0034005
* Created object of type obo:TERM with id GO:0034006
* Created object of type obo:TERM with id GO:0034007
* Created object of type obo:TERM with id GO:0034008
* Created object of type obo:TERM with id GO:0034009
* Created object of type obo:TERM with id GO:0034010
* Created object of type obo:TERM with id GO:0034011
* Created object of type obo:TERM with id GO:0034012
* Created object of type obo:TERM with id GO:0034013
* Created object of type obo:TERM with id GO:0034015
* Created object of type obo:TERM with id GO:0034016
* Created object of type obo:TERM with id GO:0034017
* Created object of type obo:TERM with id GO:0034018
* Created object of type obo:TERM with id GO:0034019
* Created object of type obo:TERM with id GO:0034020
* Created object of type obo:TERM with id GO:0034022
* Created object of type obo:TERM with id GO:0034023
* Created object of type obo:TERM with id GO:0034024
* Created object of type obo:TERM with id GO:0034025
* Created object of type obo:TERM with id GO:0034026
* Created object of type obo:TERM with id GO:0034027
* Created object of type obo:TERM with id GO:0034028
* Created object of type obo:TERM with id GO:0034029
* Created object of type obo:TERM with id GO:0034038
* Created object of type obo:TERM with id GO:0034039
* Created object of type obo:TERM with id GO:0034040
* Created object of type obo:TERM with id GO:0034041
* Created object of type obo:TERM with id GO:0034042
* Created object of type obo:TERM with id GO:0034043
* Created object of type obo:TERM with id GO:0034044
* Created object of type obo:TERM with id GO:0034045
* Populated new object GO:0010494 (macro)
  * Changed name of GO:0010494 from "<new term>" to "stress granule"
  * Set definition of GO:0010494 to "A dense aggregation in the cytosol composed of proteins and RNAs that
appear when the cell is under stress."
  * Added definition dbxref PMID:17601829 to GO:0010494
  * Copied GO:0010494 to GO:0044444 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0010494
* Populated new object GO:0033878 (macro)
  * Changed name of GO:0033878 from "<new term>" to "hormone-sensitive lipase activity"
  * Set definition of GO:0033878 to "Catalysis of the reactions: diacylglycerol + H2O = monoacylglycerol + a carboxylate, triacylglycerol + H2O = diacylglycerol + a carboxylate, and monoacylglycerol + H2O = glycerol + a carboxylate."
  * Added definition dbxref EC:3.1.1.79 to GO:0033878
  * Added general dbxref EC:3.1.1.79 to GO:0033878
  * Added synonym "diacylglycerol acylhydrolase activity" to GO:0033878
  * Added general dbxref EC:3.1.1.79 to synonym diacylglycerol acylhydrolase activity of GO:0033878
  * Changed synonym scope of GO:0033878 from "Related" to "Exact"
  * Added synonym "HSL" to GO:0033878
  * Added general dbxref EC:3.1.1.79 to synonym HSL of GO:0033878
  * Copied GO:0033878 to GO:0004091 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033878
* Populated new object GO:0033879 (macro)
  * Changed name of GO:0033879 from "<new term>" to "acetylajmaline esterase activity"
  * Set definition of GO:0033879 to "Catalysis of the reactions: 17-O-acetylajmaline + H2O = ajmaline + acetate and 17-O-acetylnorajmaline + H2O = norajmaline + acetate."
  * Added definition dbxref EC:3.1.1.80 to GO:0033879
  * Added general dbxref EC:3.1.1.80 to GO:0033879
  * Added synonym "17-O-acetylajmaline O-acetylhydrolase activity" to GO:0033879
  * Added general dbxref EC:3.1.1.80 to synonym 17-O-acetylajmaline O-acetylhydrolase activity of GO:0033879
  * Changed synonym scope of GO:0033879 from "Related" to "Exact"
  * Added synonym "2beta(R)-17-O-acetylajmalan:acetylesterase activity" to GO:0033879
  * Added general dbxref EC:3.1.1.80 to synonym 2beta(R)-17-O-acetylajmalan:acetylesterase activity of GO:0033879
  * Changed synonym scope of GO:0033879 from "Related" to "Exact"
  * Added synonym "AAE" to GO:0033879
  * Added general dbxref EC:3.1.1.80 to synonym AAE of GO:0033879
  * Added synonym "acetylajmalan esterase activity" to GO:0033879
  * Added general dbxref EC:3.1.1.80 to synonym acetylajmalan esterase activity of GO:0033879
  * Changed synonym scope of GO:0033879 from "Related" to "Exact"
  * Copied GO:0033879 to GO:0004091 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033879
* Populated new object GO:0033880 (macro)
  * Changed name of GO:0033880 from "<new term>" to "phenylacetyl-CoA hydrolase activity"
  * Set definition of GO:0033880 to "Catalysis of the reaction: phenylglyoxylyl-CoA + H2O = phenylglyoxylate + CoA."
  * Added definition dbxref EC:3.1.2.25 to GO:0033880
  * Added general dbxref EC:3.1.2.25 to GO:0033880
  * Added synonym "phenylglyoxylyl-CoA hydrolase activity" to GO:0033880
  * Added general dbxref EC:3.1.2.25 to synonym phenylglyoxylyl-CoA hydrolase activity of GO:0033880
  * Changed synonym scope of GO:0033880 from "Related" to "Exact"
  * Copied GO:0033880 to GO:0016289 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033880
* Populated new object GO:0033881 (macro)
  * Changed name of GO:0033881 from "<new term>" to "bile-acid-CoA hydrolase activity"
  * Set definition of GO:0033881 to "Catalysis of the reaction: deoxycholoyl-CoA + H2O = CoA + deoxycholate."
  * Added definition dbxref EC:3.1.2.26 to GO:0033881
  * Added general dbxref EC:3.1.2.26 to GO:0033881
  * Added synonym "bile acid-coenzyme A hydrolase activity" to GO:0033881
  * Added general dbxref EC:3.1.2.26 to synonym bile acid-coenzyme A hydrolase activity of GO:0033881
  * Changed synonym scope of GO:0033881 from "Related" to "Exact"
  * Added synonym "deoxycholoyl-CoA hydrolase activity" to GO:0033881
  * Added general dbxref EC:3.1.2.26 to synonym deoxycholoyl-CoA hydrolase activity of GO:0033881
  * Changed synonym scope of GO:0033881 from "Related" to "Exact"
  * Copied GO:0033881 to GO:0016289 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033881
* Populated new object GO:0033882 (macro)
  * Changed name of GO:0033882 from "<new term>" to "choloyl-CoA hydrolase activity"
  * Set definition of GO:0033882 to "Catalysis of the reaction: choloyl-CoA + H2O = cholate + CoA."
  * Added definition dbxref EC:3.1.2.27 to GO:0033882
  * Added general dbxref EC:3.1.2.27 to GO:0033882
  * Added synonym "chenodeoxycholoyl-coenzyme A thioesterase activity" to GO:0033882
  * Added general dbxref EC:3.1.2.27 to synonym chenodeoxycholoyl-coenzyme A thioesterase activity of GO:0033882
  * Changed synonym scope of GO:0033882 from "Related" to "Exact"
  * Added synonym "choloyl-coenzyme A thioesterase activity" to GO:0033882
  * Added general dbxref EC:3.1.2.27 to synonym choloyl-coenzyme A thioesterase activity of GO:0033882
  * Changed synonym scope of GO:0033882 from "Related" to "Exact"
  * Added synonym "peroxisomal acyl-CoA thioesterase 2 activity" to GO:0033882
  * Added general dbxref EC:3.1.2.27 to synonym peroxisomal acyl-CoA thioesterase 2 activity of GO:0033882
  * Changed synonym scope of GO:0033882 from "Related" to "Narrow"
  * Added synonym "PTE-2" to GO:0033882
  * Added general dbxref EC:3.1.2.27 to synonym PTE-2 of GO:0033882
  * Copied GO:0033882 to GO:0016289 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033882
* Populated new object GO:0033883 (macro)
  * Changed name of GO:0033883 from "<new term>" to "pyridoxal phosphatase activity"
  * Set definition of GO:0033883 to "Catalysis of the reaction: pyridoxal 5'-phosphate + H2O = pyridoxal + phosphate."
  * Added definition dbxref EC:3.1.3.74 to GO:0033883
  * Added general dbxref EC:3.1.3.74 to GO:0033883
  * Added synonym "PLP phosphatase activity" to GO:0033883
  * Added general dbxref EC:3.1.3.74 to synonym PLP phosphatase activity of GO:0033883
  * Changed synonym scope of GO:0033883 from "Related" to "Exact"
  * Added synonym "PNP phosphatase activity" to GO:0033883
  * Added general dbxref EC:3.1.3.74 to synonym PNP phosphatase activity of GO:0033883
  * Changed synonym scope of GO:0033883 from "Related" to "Exact"
  * Added synonym "pyridoxal-5'-phosphate phosphohydrolase activity" to GO:0033883
  * Added general dbxref EC:3.1.3.74 to synonym pyridoxal-5'-phosphate phosphohydrolase activity of GO:0033883
  * Changed synonym scope of GO:0033883 from "Related" to "Exact"
  * Added synonym "vitamin B6-phosphate phosphatase activity" to GO:0033883
  * Added general dbxref EC:3.1.3.74 to synonym vitamin B6-phosphate phosphatase activity of GO:0033883
  * Changed synonym scope of GO:0033883 from "Related" to "Broad"
  * Added synonym "vitamine B6 (pyridoxine) phosphatase activity" to GO:0033883
  * Added general dbxref EC:3.1.3.74 to synonym vitamine B6 (pyridoxine) phosphatase activity of GO:0033883
  * Changed synonym scope of GO:0033883 from "Related" to "Broad"
  * Copied GO:0033883 to GO:0016791 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033883
* Populated new object GO:0033884 (macro)
  * Changed name of GO:0033884 from "<new term>" to "phosphoethanolamine/phosphocholine phosphatase activity"
  * Set definition of GO:0033884 to "Catalysis of the reactions: O-phosphoethanolamine + H2O = ethanolamine + phosphate and phosphocholine + H2O = choline + phosphate."
  * Added definition dbxref EC:3.1.3.75 to GO:0033884
  * Added general dbxref EC:3.1.3.75 to GO:0033884
  * Added synonym "3X11A" to GO:0033884
  * Added general dbxref EC:3.1.3.75 to synonym 3X11A of GO:0033884
  * Added synonym "PHOSPHO1" to GO:0033884
  * Added general dbxref EC:3.1.3.75 to synonym PHOSPHO1 of GO:0033884
  * Added synonym "phosphoethanolamine phosphohydrolase activity" to GO:0033884
  * Added general dbxref EC:3.1.3.75 to synonym phosphoethanolamine phosphohydrolase activity of GO:0033884
  * Changed synonym scope of GO:0033884 from "Related" to "Exact"
  * Copied GO:0033884 to GO:0016791 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033884
* Populated new object GO:0033885 (macro)
  * Changed name of GO:0033885 from "<new term>" to "lipid-phosphate phosphatase activity"
  * Set definition of GO:0033885 to "Catalysis of the reaction: (9S,10S)-10-hydroxy-9-(phosphonooxy)octadecanoate + H2O = (9S,10S)-9,10-dihydroxyoctadecanoate + phosphate."
  * Added definition dbxref EC:3.1.3.76 to GO:0033885
  * Added general dbxref EC:3.1.3.76 to GO:0033885
  * Added synonym "(9S,10S)-10-hydroxy-9-(phosphonooxy)octadecanoate phosphohydrolase activity" to GO:0033885
  * Added general dbxref EC:3.1.3.76 to synonym (9S,10S)-10-hydroxy-9-(phosphonooxy)octadecanoate phosphohydrolase activity of GO:0033885
  * Changed synonym scope of GO:0033885 from "Related" to "Exact"
  * Added synonym "dihydroxy fatty acid phosphatase activity" to GO:0033885
  * Added general dbxref EC:3.1.3.76 to synonym dihydroxy fatty acid phosphatase activity of GO:0033885
  * Changed synonym scope of GO:0033885 from "Related" to "Exact"
  * Added synonym "hydroxy fatty acid phosphatase activity" to GO:0033885
  * Added general dbxref EC:3.1.3.76 to synonym hydroxy fatty acid phosphatase activity of GO:0033885
  * Changed synonym scope of GO:0033885 from "Related" to "Exact"
  * Added synonym "hydroxy lipid phosphatase activity" to GO:0033885
  * Added general dbxref EC:3.1.3.76 to synonym hydroxy lipid phosphatase activity of GO:0033885
  * Changed synonym scope of GO:0033885 from "Related" to "Exact"
  * Added synonym "sEH" to GO:0033885
  * Added general dbxref EC:3.1.3.76 to synonym sEH of GO:0033885
  * Added synonym "soluble epoxide hydrolase activity" to GO:0033885
  * Added general dbxref EC:3.1.3.76 to synonym soluble epoxide hydrolase activity of GO:0033885
  * Copied GO:0033885 to GO:0016791 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033885
* Populated new object GO:0033886 (macro)
  * Changed name of GO:0033886 from "<new term>" to "cellulose-polysulfatase activity"
  * Set definition of GO:0033886 to "Catalysis of the reaction: hydrolysis of the 2- and 3-sulfate groups of the polysulfates of cellulose and charonin."
  * Added definition dbxref EC:3.1.6.7 to GO:0033886
  * Added general dbxref EC:3.1.6.7 to GO:0033886
  * Added synonym "cellulose-sulfate sulfohydrolase activity" to GO:0033886
  * Added general dbxref EC:3.1.6.7 to synonym cellulose-sulfate sulfohydrolase activity of GO:0033886
  * Changed synonym scope of GO:0033886 from "Related" to "Exact"
  * Copied GO:0033886 to GO:0008484 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033886
* Populated new object GO:0033887 (macro)
  * Changed name of GO:0033887 from "<new term>" to "chondro-4-sulfatase activity"
  * Set definition of GO:0033887 to "Catalysis of the reaction: 4-deoxy-beta-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine 4-sulfate + H2O = 4-deoxy-beta-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine + sulfate."
  * Added definition dbxref EC:3.1.6.9 to GO:0033887
  * Added general dbxref EC:3.1.6.9 to GO:0033887
  * Added synonym "4-deoxy-beta-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine-4-sulfate 4-sulfohydrolase activity" to GO:0033887
  * Added general dbxref EC:3.1.6.9 to synonym 4-deoxy-beta-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine-4-sulfate 4-sulfohydrolase activity of GO:0033887
  * Changed synonym scope of GO:0033887 from "Related" to "Exact"
  * Copied GO:0033887 to GO:0008484 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033887
* Populated new object GO:0033888 (macro)
  * Changed name of GO:0033888 from "<new term>" to "chondro-6-sulfatase activity"
  * Set definition of GO:0033888 to "Catalysis of the reaction: 4-deoxy-beta-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine 6-sulfate + H2O = 4-deoxy-beta-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine + sulfate."
  * Added definition dbxref EC:3.1.6.10 to GO:0033888
  * Added general dbxref EC:3.1.6.10 to GO:0033888
  * Added synonym "4-deoxy-beta-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine-6-sulfate 6-sulfohydrolase activity" to GO:0033888
  * Added general dbxref EC:3.1.6.10 to synonym 4-deoxy-beta-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine-6-sulfate 6-sulfohydrolase activity of GO:0033888
  * Changed synonym scope of GO:0033888 from "Related" to "Exact"
  * Copied GO:0033888 to GO:0008484 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033888
* Populated new object GO:0033889 (macro)
  * Changed name of GO:0033889 from "<new term>" to "N-sulfoglucosamine-3-sulfatase activity"
  * Set definition of GO:0033889 to "Catalysis of the reaction: hydrolysis of the 3-sulfate groups of the N-sulfo-D-glucosamine 3-O-sulfate units of heparin."
  * Added definition dbxref EC:3.1.6.15 to GO:0033889
  * Added general dbxref EC:3.1.6.15 to GO:0033889
  * Added synonym "chondroitinsulfatase activity" to GO:0033889
  * Added general dbxref EC:3.1.6.15 to synonym chondroitinsulfatase activity of GO:0033889
  * Changed synonym scope of GO:0033889 from "Related" to "Broad"
  * Added synonym "N-sulfo-3-sulfoglucosamine 3-sulfohydrolase activity" to GO:0033889
  * Added general dbxref EC:3.1.6.15 to synonym N-sulfo-3-sulfoglucosamine 3-sulfohydrolase activity of GO:0033889
  * Changed synonym scope of GO:0033889 from "Related" to "Exact"
  * Copied GO:0033889 to GO:0008484 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033889
* Populated new object GO:0033890 (macro)
  * Changed name of GO:0033890 from "<new term>" to "ribonuclease D activity"
  * Set definition of GO:0033890 to "Catalysis of the reaction: exonucleolytic cleavage that removes extra residues from the 3'-terminus of tRNA to produce 5'-mononucleotides.."
  * Added definition dbxref EC:3.1.13.5 to GO:0033890
  * Added general dbxref EC:3.1.13.5 to GO:0033890
  * Added synonym "RNase D activity" to GO:0033890
  * Added general dbxref EC:3.1.13.5 to synonym RNase D activity of GO:0033890
  * Changed synonym scope of GO:0033890 from "Related" to "Exact"
  * Copied GO:0033890 to GO:0016896 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033890
* Populated new object GO:0033891 (macro)
  * Changed name of GO:0033891 from "<new term>" to "CC-preferring endodeoxyribonuclease activity"
  * Set definition of GO:0033891 to "Catalysis of the reaction: endonucleolytic cleavage to give 5'-phosphooligonucleotide end-products, with a preference for cleavage within the sequence CC."
  * Added definition dbxref EC:3.1.21.6 to GO:0033891
  * Added general dbxref EC:3.1.21.6 to GO:0033891
  * Added synonym "5'-CC-3'-preferring endodeoxyribonuclease activity" to GO:0033891
  * Added general dbxref EC:3.1.21.6 to synonym 5'-CC-3'-preferring endodeoxyribonuclease activity of GO:0033891
  * Changed synonym scope of GO:0033891 from "Related" to "Exact"
  * Added synonym "Streptomyces glaucescens exocytoplasmic dodeoxyribonuclease activity" to GO:0033891
  * Added general dbxref EC:3.1.21.6 to synonym Streptomyces glaucescens exocytoplasmic dodeoxyribonuclease activity of GO:0033891
  * Changed synonym scope of GO:0033891 from "Related" to "Exact"
  * Added synonym "Streptomyces glaucescens exocytoplasmic endodeoxyribonuclease activity" to GO:0033891
  * Added general dbxref EC:3.1.21.6 to synonym Streptomyces glaucescens exocytoplasmic endodeoxyribonuclease activity of GO:0033891
  * Changed synonym scope of GO:0033891 from "Related" to "Exact"
  * Added synonym "Streptomyces glaucescens exocytoplasmic endonuclease activity" to GO:0033891
  * Added general dbxref EC:3.1.21.6 to synonym Streptomyces glaucescens exocytoplasmic endonuclease activity of GO:0033891
  * Changed synonym scope of GO:0033891 from "Related" to "Exact"
  * Copied GO:0033891 to GO:0016888 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033891
* Populated new object GO:0033892 (macro)
  * Changed name of GO:0033892 from "<new term>" to "deoxyribonuclease (pyrimidine dimer) activity"
  * Set definition of GO:0033892 to "Catalysis of the reaction: endonucleolytic cleavage near pyrimidine dimers to products with 5'-phosphate."
  * Added definition dbxref EC:3.1.25.1 to GO:0033892
  * Added general dbxref EC:3.1.25.1 to GO:0033892
  * Added synonym "bacteriophage T4 endodeoxyribonuclease V activity" to GO:0033892
  * Added general dbxref EC:3.1.25.1 to synonym bacteriophage T4 endodeoxyribonuclease V activity of GO:0033892
  * Changed synonym scope of GO:0033892 from "Related" to "Exact"
  * Added synonym "endodeoxyribonuclease (pyrimidine dimer) activity" to GO:0033892
  * Added general dbxref EC:3.1.25.1 to synonym endodeoxyribonuclease (pyrimidine dimer) activity of GO:0033892
  * Changed synonym scope of GO:0033892 from "Related" to "Exact"
  * Added synonym "T4 endonuclease V activity" to GO:0033892
  * Added general dbxref EC:3.1.25.1 to synonym T4 endonuclease V activity of GO:0033892
  * Changed synonym scope of GO:0033892 from "Related" to "Exact"
  * Copied GO:0033892 to GO:0016890 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033892
* Populated new object GO:0033893 (macro)
  * Changed name of GO:0033893 from "<new term>" to "ribonuclease IV activity"
  * Set definition of GO:0033893 to "Catalysis of the reaction: endonucleolytic cleavage of poly(A) to fragments terminated by 3'-hydroxy and 5'-phosphate groups."
  * Added definition dbxref EC:3.1.26.6 to GO:0033893
  * Added general dbxref EC:3.1.26.6 to GO:0033893
  * Added synonym "endoribonuclease IV activity" to GO:0033893
  * Added general dbxref EC:3.1.26.6 to synonym endoribonuclease IV activity of GO:0033893
  * Changed synonym scope of GO:0033893 from "Related" to "Exact"
  * Added synonym "poly(A)-specific ribonuclease activity" to GO:0033893
  * Added general dbxref EC:3.1.26.6 to synonym poly(A)-specific ribonuclease activity of GO:0033893
  * Changed synonym scope of GO:0033893 from "Related" to "Broad"
  * Copied GO:0033893 to GO:0016891 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033893
* Populated new object GO:0033894 (macro)
  * Changed name of GO:0033894 from "<new term>" to "ribonuclease P4 activity"
  * Set definition of GO:0033894 to "Catalysis of the reaction: endonucleolytic cleavage of RNA, removing 3'-extranucleotides from tRNA precursor."
  * Added definition dbxref EC:3.1.26.7 to GO:0033894
  * Added general dbxref EC:3.1.26.7 to GO:0033894
  * Copied GO:0033894 to GO:0016891 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033894
* Populated new object GO:0033895 (macro)
  * Changed name of GO:0033895 from "<new term>" to "ribonuclease [poly-(U)-specific] activity"
  * Set definition of GO:0033895 to "Catalysis of the reaction: endonucleolytic cleavage of poly(U) to fragments terminated by 3'-hydroxy and 5'-phosphate groups."
  * Added definition dbxref EC:3.1.26.9 to GO:0033895
  * Added general dbxref EC:3.1.26.9 to GO:0033895
  * Added synonym "ribonuclease (uracil-specific) activity" to GO:0033895
  * Added general dbxref EC:3.1.26.9 to synonym ribonuclease (uracil-specific) activity of GO:0033895
  * Changed synonym scope of GO:0033895 from "Related" to "Exact"
  * Added synonym "uracil-specific endoribonuclease activity" to GO:0033895
  * Added general dbxref EC:3.1.26.9 to synonym uracil-specific endoribonuclease activity of GO:0033895
  * Changed synonym scope of GO:0033895 from "Related" to "Exact"
  * Added synonym "uracil-specific RNase activity" to GO:0033895
  * Added general dbxref EC:3.1.26.9 to synonym uracil-specific RNase activity of GO:0033895
  * Changed synonym scope of GO:0033895 from "Related" to "Exact"
  * Copied GO:0033895 to GO:0016891 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033895
* Populated new object GO:0033896 (macro)
  * Changed name of GO:0033896 from "<new term>" to "ribonuclease IX activity"
  * Set definition of GO:0033896 to "Catalysis of the reaction: endonucleolytic cleavage of poly(U) or poly(C) to fragments terminated by 3'-hydroxy and 5'-phosphate groups."
  * Added definition dbxref EC:3.1.26.10 to GO:0033896
  * Added general dbxref EC:3.1.26.10 to GO:0033896
  * Added synonym "poly(U)- and poly(C)-specific endoribonuclease activity" to GO:0033896
  * Added general dbxref EC:3.1.26.10 to synonym poly(U)- and poly(C)-specific endoribonuclease activity of GO:0033896
  * Changed synonym scope of GO:0033896 from "Related" to "Exact"
  * Copied GO:0033896 to GO:0016891 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033896
* Populated new object GO:0033897 (macro)
  * Changed name of GO:0033897 from "<new term>" to "ribonuclease T2 activity"
  * Set definition of GO:0033897 to "Catalysis of the reaction: two-stage endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides with 2',3'-cyclic phosphate intermediates."
  * Added definition dbxref EC:3.1.27.1 to GO:0033897
  * Added general dbxref EC:3.1.27.1 to GO:0033897
  * Added synonym "acid ribonuclease activity" to GO:0033897
  * Added general dbxref EC:3.1.27.1 to synonym acid ribonuclease activity of GO:0033897
  * Changed synonym scope of GO:0033897 from "Related" to "Exact"
  * Added synonym "acid RNase activity" to