[go-diff] GO update 12/03/2007

Mon Dec 3 21:30:44 PST 2007

OBODIFF of gene_ontology_edit.obo version 5.580 by 5.583

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0033790
* Created object of type obo:TERM with id GO:0033833
* Created object of type obo:TERM with id GO:0033845
* Created object of type obo:TERM with id GO:0033859
* Created object of type obo:TERM with id GO:0033860
* Created object of type obo:TERM with id GO:0033861
* Created object of type obo:TERM with id GO:0033864
* Populated new object GO:0033790 (macro)
  * Changed name of GO:0033790 from "<new term>" to "hydroxymethylfurfural reductase activity"
  * Set definition of GO:0033790 to "Catalysis of the reaction: 5-hydroxymethylfurfural + NAD(P)H + H+ = 2,5-bis-hydroxymethylfuran + NAD(P)+."
  * Added definition dbxref GOC:jp to GO:0033790
  * Added definition dbxref GOC:mah to GO:0033790
  * Added definition dbxref PMID:15338422 to GO:0033790
  * Added definition dbxref PMID:16652391 to GO:0033790
  * Copied GO:0033790 to GO:0016616 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033790
* Populated new object GO:0033833 (macro)
  * Changed name of GO:0033833 from "<new term>" to "hydroxymethylfurfural reductase (NADH) activity"
  * Set definition of GO:0033833 to "Catalysis of the reaction: 5-hydroxymethylfurfural + NADH + H+ = 2,5-bis-hydroxymethylfuran + NAD+."
  * Added definition dbxref GOC:jp to GO:0033833
  * Added definition dbxref GOC:mah to GO:0033833
  * Added definition dbxref PMID:15338422 to GO:0033833
  * Added definition dbxref PMID:16652391 to GO:0033833
  * Copied GO:0033833 to GO:0033790 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033833
* Populated new object GO:0033845 (macro)
  * Changed name of GO:0033845 from "<new term>" to "hydroxymethylfurfural reductase (NADPH) activity"
  * Set definition of GO:0033845 to "Catalysis of the reaction: 5-hydroxymethylfurfural + NADPH + H+ = 2,5-bis-hydroxymethylfuran + NADP+."
  * Added definition dbxref GOC:jp to GO:0033845
  * Added definition dbxref GOC:mah to GO:0033845
  * Added definition dbxref PMID:15338422 to GO:0033845
  * Added definition dbxref PMID:16652391 to GO:0033845
  * Copied GO:0033845 to GO:0033790 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033845
* Populated new object GO:0033859 (macro)
  * Changed name of GO:0033859 from "<new term>" to "furaldehyde metabolic process"
  * Set definition of GO:0033859 to "The chemical reactions and pathways involving furaldehyde, a furan ring-containing aldehyde compound which can be formed from the thermal decomposition of biomass."
  * Added definition dbxref GOC:jp to GO:0033859
  * Added definition dbxref PMID:15338422 to GO:0033859
  * Added definition dbxref PMID:16652391 to GO:0033859
  * Copied GO:0033859 to GO:0046483 with type OBO_REL:is_a
  * Copied GO:0033859 to GO:0006081 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033859
* Populated new object GO:0033860 (macro)
  * Changed name of GO:0033860 from "<new term>" to "regulation of NAD(P)H oxidase activity"
  * Set definition of GO:0033860 to "Any process that modulates the activity of the enzyme NAD(P)H oxidase."
  * Added definition dbxref GOC:mah to GO:0033860
  * Copied GO:0033860 to GO:0051341 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033860
* Populated new object GO:0033861 (macro)
  * Changed name of GO:0033861 from "<new term>" to "negative regulation of NAD(P)H oxidase activity"
  * Set definition of GO:0033861 to "Any process that stops or reduces the activity of the enzyme NAD(P)H oxidase."
  * Added definition dbxref GOC:mah to GO:0033861
  * Added GO:0033861 to category gosubset_prok
  * Added synonym "down regulation of NAD(P)H oxidase activity" to GO:0033861
  * Changed synonym scope of GO:0033861 from "Related" to "Exact"
  * Added synonym "down-regulation of NAD(P)H oxidase activity" to GO:0033861
  * Changed synonym scope of GO:0033861 from "Related" to "Exact"
  * Added synonym "downregulation of NAD(P)H oxidase activity" to GO:0033861
  * Changed synonym scope of GO:0033861 from "Related" to "Exact"
  * Added synonym "inhibition of NAD(P)H oxidase activity" to GO:0033861
  * Changed synonym scope of GO:0033861 from "Related" to "Narrow"
  * Copied GO:0033861 to GO:0051354 with type OBO_REL:is_a
  * Copied GO:0033861 to GO:0033860 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033861
* Populated new object GO:0033864 (macro)
  * Changed name of GO:0033864 from "<new term>" to "positive regulation of NAD(P)H oxidase activity"
  * Set definition of GO:0033864 to "Any process that activates or increases the activity of the enzyme NAD(P)H oxidase."
  * Added definition dbxref GOC:mah to GO:0033864
  * Added GO:0033864 to category gosubset_prok
  * Added synonym "activation of NAD(P)H oxidase activity" to GO:0033864
  * Changed synonym scope of GO:0033864 from "Related" to "Narrow"
  * Added synonym "stimulation of NAD(P)H oxidase activity" to GO:0033864
  * Changed synonym scope of GO:0033864 from "Related" to "Narrow"
  * Added synonym "up regulation of NAD(P)H oxidase activity" to GO:0033864
  * Changed synonym scope of GO:0033864 from "Related" to "Exact"
  * Added synonym "up-regulation of NAD(P)H oxidase activity" to GO:0033864
  * Changed synonym scope of GO:0033864 from "Related" to "Exact"
  * Added synonym "upregulation of NAD(P)H oxidase activity" to GO:0033864
  * Changed synonym scope of GO:0033864 from "Related" to "Exact"
  * Copied GO:0033864 to GO:0033860 with type OBO_REL:is_a
  * Copied GO:0033864 to GO:0051353 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033864
* Deleted GO:0001932 --OBO_REL:is_a--> GO:0006521
* Deleted GO:0001933 --OBO_REL:is_a--> GO:0045763
* Deleted GO:0001934 --OBO_REL:is_a--> GO:0045764
* Added general dbxref EC:1.2.4.4 to synonym 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) activity of GO:0003863
* Added general dbxref EC:1.2.4.4 to synonym 3-methyl-2-oxobutanoate:dihydrolipoyllysine-residue (2-methylpropanoyl)transferase-lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-2-methylpropanoylating) of GO:0003863
* Added general dbxref EC:1.9.3.1 to synonym aa3-type cytochrome c oxidase of GO:0004129
* Added general dbxref EC:1.9.3.1 to synonym ba3-type cytochrome c oxidase of GO:0004129
* Added general dbxref EC:1.9.3.1 to synonym caa3-type cytochrome c oxidase of GO:0004129
* Added general dbxref EC:1.9.3.1 to synonym cbb3-type cytochrome c oxidase of GO:0004129
* Added general dbxref EC:1.9.3.1 to synonym ferrocytochrome c oxidase of GO:0004129
* Changed synonym scope of GO:0004129 from "Exact" to "Narrow"
* Added general dbxref EC:1.9.3.1 to synonym ferrocytochrome-c:oxygen oxidoreductase of GO:0004129
* Changed synonym scope of GO:0004129 from "Exact" to "Narrow"
* Added general dbxref EC:1.9.3.1 to synonym indophenol oxidase of GO:0004129
* Changed synonym scope of GO:0004129 from "Exact" to "Narrow"
* Added general dbxref EC:1.9.3.1 to synonym indophenolase of GO:0004129
* Changed synonym scope of GO:0004129 from "Exact" to "Narrow"
* Added general dbxref EC:1.9.3.1 to synonym NADH cytochrome c oxidase of GO:0004129
* Added general dbxref EC:1.8.1.4 to synonym dihydrolipoamide dehydrogenase activity of GO:0004148
* Added general dbxref EC:1.8.1.4 to synonym dihydrolipoamide reduction of GO:0004148
* Added general dbxref EC:1.8.1.4 to synonym dihydrolipoamide:NAD+ oxidoreductase of GO:0004148
* Added general dbxref EC:1.8.1.4 to synonym dihydrolipoylprotein reduction of GO:0004148
* Added general dbxref EC:1.8.1.4 to synonym protein-6-N-(dihydrolipoyl)lysine:NAD+ oxidoreductase of GO:0004148
* Added general dbxref EC:1.8.1.4 to synonym protein-N6-(dihydrolipoyl)lysine:NAD+ oxidoreductase of GO:0004148
* Added general dbxref EC:1.3.1.9 to synonym acyl-acyl-carrier-protein:NAD+ oxidoreductase of GO:0004318
* Added general dbxref EC:1.3.1.9 to synonym enoyl-[acyl-carrier protein] reductase (NADH) activity of GO:0004318
* Added general dbxref EC:1.3.1.9 to synonym enoyl-ACP reductase (NADH) activity of GO:0004318
* Added general dbxref EC:1.3.1.9 to synonym enoyl-acyl-carrier-protein reductase (NADH) of GO:0004318
* Added general dbxref EC:1.4.1.13 to synonym L-glutamate:NADP+ oxidoreductase (transaminating) of GO:0004355
* Added general dbxref EC:1.4.1.13 to synonym NADPH-linked glutamate synthase of GO:0004355
* Added general dbxref EC:1.4.4.2 to synonym glycine-cleavage complex of GO:0004375
* Added general dbxref EC:1.4.4.2 to synonym glycine:H-protein-lipoyllysine oxidoreductase (decarboxylating, acceptor-amino-methylating) of GO:0004375
* Added general dbxref EC:1.4.4.2 to synonym glycine:lipoylprotein oxidoreductase (decarboxylating and acceptor-aminomethylating) of GO:0004375
* Added general dbxref EC:1.4.4.2 to synonym P-protein of GO:0004375
* Added general dbxref EC:1.4.4.2 to synonym protein P1 of GO:0004375
* Deleted synonym "5,10-methylenetetrahydrofolate:NAD+ oxidoreductase" from GO:0004486
* Added synonym "N5,N10-methylenetetrahydrofolate dehydrogenase activity" to GO:0004486
* Added general dbxref EC:1.5.1.5 to synonym N5,N10-methylenetetrahydrofolate dehydrogenase activity of GO:0004486
* Changed synonym scope of GO:0004486 from "Related" to "Exact"
* Added synonym "5,10-methylenetetrahydrofolate dehydrogenase activity" to GO:0004487
* Added general dbxref EC:1.5.1.5 to synonym 5,10-methylenetetrahydrofolate dehydrogenase activity of GO:0004487
* Changed synonym scope of GO:0004487 from "Related" to "Exact"
* Added synonym "5,10-methylenetetrahydrofolate:NAD+ oxidoreductase" to GO:0004487
* Added general dbxref EC:1.5.1.15 to synonym 5,10-methylenetetrahydrofolate:NAD+ oxidoreductase of GO:0004487
* Changed synonym scope of GO:0004487 from "Related" to "Exact"
* Deleted synonym "5,10-methylenetetrahydrofolate dehydrogenase activity" from GO:0004488
* Deleted synonym "N5,N10-methylenetetrahydrofolate dehydrogenase activity" from GO:0004488
* Added general dbxref EC:1.8.4.8 to synonym adenosine 3',5'-bisphosphate,sulfite:oxidized-thioredoxin oxidoreductase (3'-phosphoadenosine-5'-phosphosulfate-forming) of GO:0004604
* Added general dbxref EC:1.8.4.8 to synonym adenosine 3',5'-bisphosphate,sulfite:thioredoxin-disulfide oxidoreductase (3'-phosphoadenosine-5'-phosphosulfate-forming) of GO:0004604
* Deleted GO:0006649 --OBO_REL:is_a--> GO:0006644
* Copied GO:0006649 to GO:0015914 with type OBO_REL:is_a
* Deleted GO:0006754 --OBO_REL:is_a--> GO:0009108
* Changed name of GO:0007105 from "site selection involved in cytokinesis" to "cytokinesis, site selection"
* Deleted synonym "cytokinesis, site selection" from GO:0007105
* Added synonym "site selection involved in cytokinesis" to GO:0007105
* Added general dbxref GOC:tb to synonym site selection involved in cytokinesis of GO:0007105
* Added general dbxref GOC:dph to synonym site selection involved in cytokinesis of GO:0007105
* Changed synonym scope of GO:0007105 from "Related" to "Exact"
* Changed name of GO:0007108 from "initiation of separation involved in cytokinesis" to "cytokinesis, initiation of separation"
* Deleted synonym "cytokinesis, initiation of separation" from GO:0007108
* Added synonym "initiation of separation involved in cytokinesis" to GO:0007108
* Added general dbxref GOC:tb to synonym initiation of separation involved in cytokinesis of GO:0007108
* Added general dbxref GOC:dph to synonym initiation of separation involved in cytokinesis of GO:0007108
* Changed synonym scope of GO:0007108 from "Related" to "Exact"
* Changed name of GO:0007109 from "completion of separation involved in cytokinesis" to "cytokinesis, completion of separation"
* Deleted synonym "cytokinesis, completion of separation" from GO:0007109
* Added synonym "completion of separation involved in cytokinesis" to GO:0007109
* Added general dbxref GOC:tb to synonym completion of separation involved in cytokinesis of GO:0007109
* Added general dbxref GOC:dph to synonym completion of separation involved in cytokinesis of GO:0007109
* Changed synonym scope of GO:0007109 from "Related" to "Exact"
* Added general dbxref EC:1.4.3.16 to synonym L-aspartate:oxygen oxidoreductase (deaminating) of GO:0008734
* Added general dbxref EC:1.6.1.1 to synonym energy-linked transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym energy-linked transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym H+-thase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym H+-thase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym NAD transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym NAD transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym NADH transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym NADH transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym NADH-NADP-transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym NADH-NADP-transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym NADPH-NAD oxidoreductase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym NADPH-NAD oxidoreductase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym NADPH-NAD transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym NADPH-NAD transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym NADPH:NAD+ transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym NADPH:NAD+ transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym nicotinamide adenine dinucleotide (phosphate) transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym nicotinamide adenine dinucleotide (phosphate) transhydrogenase of GO:0008746
* Added general dbxref EC:1.6.1.1 to synonym pyridine nucleotide transferase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym pyridine nucleotide transferase of GO:0008746
* Added general dbxref EC:1.6.1.2 to synonym NAD(P) transhydrogenase (AB-specific) activity of GO:0008750
* Added general dbxref EC:1.6.1.2 to synonym NADPH:NAD+ oxidoreductase (AB-specific) of GO:0008750
* Added general dbxref EC:1.6.99.6 to synonym NADPH oxidase of GO:0008753
* Added general dbxref EC:1.6.99.6 to synonym NADPH:(quinone-acceptor) oxidoreductase of GO:0008753
* Added general dbxref EC:1.6.99.6 to synonym reduced nicotinamide adenine dinucleotide phosphate (quinone) dehydrogenase of GO:0008753
* Added general dbxref EC:1.7.99.4 to synonym nitrate reductase (acceptor) of GO:0008940
* Added general dbxref EC:1.7.99.4 to synonym nitrite:(acceptor) oxidoreductase of GO:0008940
* Added general dbxref EC:1.7.99.4 to synonym nitrite:acceptor oxidoreductase of GO:0008940
* Added general dbxref EC:1.6.6.9 to synonym NADH:trimethylamine-N-oxide oxidoreductase of GO:0009033
* Added general dbxref EC:1.6.6.9 to synonym trimethylamine N-oxide reductase of GO:0009033
* Added general dbxref EC:1.6.6.9 to synonym trimethylamine oxide reductase of GO:0009033
* Deleted GO:0009670 --OBO_REL:is_a--> GO:0015238
* Added general dbxref EC:1.8.99.2 to synonym adenosine 5'-phosphosulfate reductase of GO:0009973
* Added general dbxref EC:1.8.99.2 to synonym adenosine phosphosulfate reductase activity of GO:0009973
* Added general dbxref EC:1.8.99.2 to synonym adenylyl-sulphate reductase activity of GO:0009973
* Added general dbxref EC:1.8.99.2 to synonym AMP, sulfite:(acceptor) oxidoreductase (adenosine-5'-phosphosulfate-forming) of GO:0009973
* Added general dbxref EC:1.8.99.2 to synonym AMP, sulfite:acceptor oxidoreductase (adenosine-5'-phosphosulfate-forming) of GO:0009973
* Added general dbxref EC:1.8.99.2 to synonym APS reductase activity of GO:0009973
* Added general dbxref EC:1.8.99.2 to synonym APS-reductase of GO:0009973
* Added general dbxref EC:1.4.1.14 to synonym glutamate (reduced nicotinamide adenine dinucleotide) synthase of GO:0016040
* Added general dbxref EC:1.4.1.14 to synonym L-glutamate synthase (NADH) of GO:0016040
* Added general dbxref EC:1.4.1.14 to synonym L-glutamate:NAD+ oxidoreductase (transaminating) of GO:0016040
* Added general dbxref EC:1.4.1.14 to synonym NADH: GOGAT of GO:0016040
* Added general dbxref EC:1.11.1.10 to synonym chloride:hydrogen-peroxide oxidoreductase of GO:0016691
* Added general dbxref EC:1.13.11.2 to synonym catechol 2,3-oxygenase of GO:0018577
* Added general dbxref EC:1.13.11.2 to synonym catechol oxygenase of GO:0018577
* Added general dbxref EC:1.13.11.2 to synonym catechol:oxygen 2,3-oxidoreductase (decyclizing) of GO:0018577
* Added general dbxref EC:1.13.11.2 to synonym pyrocatechol 2,3-dioxygenase of GO:0018577
* Deleted GO:0030104 --OBO_REL:is_a--> GO:0050878
* Copied GO:0033832 to GO:0046527 with type OBO_REL:is_a
* Deleted GO:0045332 --OBO_REL:is_a--> GO:0006644
* Deleted GO:0046034 --OBO_REL:is_a--> GO:0051186
* Added general dbxref EC:1.8.4.4 to synonym glutathione:cystine oxidoreductase of GO:0047141
* Added general dbxref EC:1.8.4.4 to synonym GSH-cystine transhydrogenase of GO:0047141
* Added general dbxref EC:1.8.4.4 to synonym NADPH-dependent GSH-cystine transhydrogenase of GO:0047141
* Added general dbxref EC:1.8.1.6 to synonym cystine reductase (NADH) activity of GO:0050456
* Added general dbxref EC:1.8.1.6 to synonym cystine reductase (NADH2) of GO:0050456
* Added general dbxref EC:1.8.1.6 to synonym L-cysteine:NAD+ oxidoreductase of GO:0050456
* Added general dbxref EC:1.8.1.6 to synonym NADH2:L-cystine oxidoreductase of GO:0050456
* Copied GO:0050891 to GO:0050878 with type OBO_REL:is_a
* Changed synonym scope of GO:0051091 from "Exact" to "Narrow"