[go-diff] GO update 12/05/2007

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_edit.obo version 5.587 by 5.589

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010476
* Created object of type obo:TERM with id GO:0010477
* Created object of type obo:TERM with id GO:0010478
* Created object of type obo:TERM with id GO:0010479
* Populated new object GO:0010476 (macro)
  * Changed name of GO:0010476 from "<new term>" to "gibberellin-mediated signaling"
  * Set definition of GO:0010476 to "The series of molecular signals generated as a consequence of gibberellin stimulus."
  * Added definition dbxref PMID:17521411 to GO:0010476
  * Copied GO:0010476 to GO:0009755 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010476
* Populated new object GO:0010477 (macro)
  * Changed name of GO:0010477 from "<new term>" to "response to sulfur dioxide"
  * Set definition of GO:0010477 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sulfur dioxide (SO2) stimulus."
  * Added definition dbxref PMID:17425719 to GO:0010477
  * Copied GO:0010477 to GO:0010035 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010477
* Populated new object GO:0010478 (macro)
  * Changed name of GO:0010478 from "<new term>" to "chlororespiration"
  * Set definition of GO:0010478 to "A respiratory electron flow (from NAD(P)H to plastoquinone (PQ) and O2) involving both a nonphotochemical reduction and re-oxidation of PQ pool."
  * Added definition dbxref GOC:TB to GO:0010478
  * Added definition dbxref PMID:17573537 to GO:0010478
  * Copied GO:0010478 to GO:0006118 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010478
* Populated new object GO:0010479 (macro)
  * Changed name of GO:0010479 from "<new term>" to "stele development"
  * Set definition of GO:0010479 to "The process whose specific outcome is the progression of the stele over time, from its formation to the mature structure. The stele is the central column of primary vascular tissue in the root and any tissue that it surrounds."
  * Added definition dbxref GOC:TB to GO:0010479
  * Copied GO:0010479 to GO:0009888 with type OBO_REL:is_a
  * Copied GO:0010479 to GO:0048364 with type part_of
  * Assigned namespace "biological_process" to GO:0010479
* Added comment "Note that this term specifically refers to the reaction proceeding in the direction shown; it should therefore be used to annotate gene products that catalyze the oxidation of reduced ferredoxin or adrenodoxin; also consider annotating to the molecular function term 'NADPH-adrenodoxin reductase activity ; GO:0015039'."
* Deleted synonym "adrenodoxin reductase activity" from GO:0004324
* Deleted synonym "NADPH:adrenodoxin oxidoreductase activity" from GO:0004324
* Deleted GO:0006285 --OBO_REL:is_a--> GO:0009264
* Copied GO:0006285 to GO:0006308 with type OBO_REL:is_a
* Deleted GO:0009740 --OBO_REL:is_a--> GO:0009755
* Copied GO:0009740 to GO:0010476 with type OBO_REL:is_a
* Changed definition of GO:0010471 from "Catalysis of the reaction: GDP-galactose-1-phosphate +
mannose-1-phosphate = galactose-1-phosphate + GDP-mannose." to "Catalysis of the reaction: GDP-galactose-1-phosphate + mannose-1-phosphate = galactose-1-phosphate + GDP-mannose."
* Changed definition of GO:0010472 from "Catalysis of the reaction: GDP-galactose-1-phosphate +
glucose-1-phosphate = galactose-1-phosphate + GDP-glucose." to "Catalysis of the reaction: GDP-galactose-1-phosphate + glucose-1-phosphate = galactose-1-phosphate + GDP-glucose."
* Changed definition of GO:0010473 from "Catalysis of the reaction: GDP-galactose-1-phosphate +
myoinositol-1-phosphate = galactose-1-phosphate + GDP-myoinositol." to "Catalysis of the reaction: GDP-galactose-1-phosphate + myoinositol-1-phosphate = galactose-1-phosphate + GDP-myoinositol."
* Changed definition of GO:0010474 from "Catalysis of the reaction: GDP + D-glucose 1-phosphate = phosphate
+ GDP-glucose." to "Catalysis of the reaction: GDP + D-glucose 1-phosphate = phosphate + GDP-glucose."
* Changed definition of GO:0010475 from "Catalysis of the reaction: GDP + L-galactose 1-phosphate =
phosphate + GDP-galactose." to "Catalysis of the reaction: GDP + L-galactose 1-phosphate = phosphate + GDP-galactose."
* Added comment "Note that this term specifically refers to the reaction proceeding in the direction shown; under physiological conditions adrenodoxin reduction by adrenodoxin reductase is coupled with electron transfer from AdR to P450, which catalyzes an irreversible monooxygenation reaction. This term should therefore be used to annotate gene products that catalyze the reduction of oxidized adrenodoxin; also consider annotating to the molecular function term 'ferredoxin-NADP+ reductase activity ; GO:0004324'."
* Added definition dbxref GOC:kd to GO:0015039
* Added synonym "adrenodoxin reductase activity" to GO:0015039
* Added general dbxref EC:1.18.1.2 to synonym adrenodoxin reductase activity of GO:0015039
* Changed synonym scope of GO:0015039 from "Related" to "Broad"
* Added synonym "adrenodoxin-type ferredoxin reductase activity" to GO:0015039
* Added general dbxref GOC:kd to synonym adrenodoxin-type ferredoxin reductase activity of GO:0015039
* Changed synonym scope of GO:0015039 from "Related" to "Exact"
* Added synonym "NADPH:adrenodoxin oxidoreductase activity" to GO:0015039
* Added general dbxref EC:1.18.1.2 to synonym NADPH:adrenodoxin oxidoreductase activity of GO:0015039
* Changed synonym scope of GO:0015039 from "Related" to "Exact"
* Deleted definition dbxref OC:GOC:mtg_transport from GO:0015250
* Added definition dbxref `GOC:mtg_transport to GO:0015250
* Deleted GO:0043793 --OBO_REL:is_a--> GO:0003824
* Copied GO:0043793 to GO:0016763 with type OBO_REL:is_a
* changed "is transitive" status of part_of to true