[go-diff] GO update 12/10/2007

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_edit.obo version 5.596 by 5.604

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010489
* Created object of type obo:TERM with id GO:0010490
* Created object of type obo:TERM with id GO:0010491
* Created object of type obo:TERM with id GO:0010492
* Created object of type obo:TERM with id GO:0010493
* Created object of type obo:TERM with id GO:0060184
* Populated new object GO:0010489 (macro)
  * Changed name of GO:0010489 from "<new term>" to "UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity"
  * Set definition of GO:0010489 to "Catalysis of the reaction: UDP-4-keto-6-deoxyglucose -> UDP-4-keto-rhamnose."
  * Added definition dbxref GOC:tair_curators to GO:0010489
  * Added definition dbxref PMID:17190829 to GO:0010489
  * Copied GO:0010489 to GO:0016857 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010489
* Populated new object GO:0010490 (macro)
  * Changed name of GO:0010490 from "<new term>" to "UDP-4-keto-rhamnose-4-keto-reductase activity"
  * Set definition of GO:0010490 to "Catalysis of the reaction: UDP-4-keto-rhamnose + NADPH -> UDP-rhamnose
+ NADP+."
  * Added definition dbxref GOC:tair_curators to GO:0010490
  * Added definition dbxref PMID:17190829 to GO:0010490
  * Copied GO:0010490 to GO:0016616 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010490
* Populated new object GO:0010491 (macro)
  * Changed name of GO:0010491 from "<new term>" to "UTP:arabinose-1-phosphate uridylyltransferase activity"
  * Set definition of GO:0010491 to "Catalysis of the reaction: alpha-L-arabinose 1-phosphate + UTP = UDP-L-arabinose + diphosphate."
  * Added definition dbxref PMID:17341835 to GO:0010491
  * Copied GO:0010491 to GO:0051748 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010491
* Populated new object GO:0010492 (macro)
  * Changed name of GO:0010492 from "<new term>" to "maintenance of shoot apical meristem identity"
  * Set definition of GO:0010492 to "The processes involved in maintaining the identity of the shoot apical meristem. Identity is considered to be the aggregate of characteristics by which a structure is recognized."
  * Added definition dbxref PMID:17461786 to GO:0010492
  * Copied GO:0010492 to GO:0010074 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010492
* Populated new object GO:0010493 (macro)
  * Changed name of GO:0010493 from "<new term>" to "Lewis a epitope biosynthetic process"
  * Set definition of GO:0010493 to "The chemical reactions and pathways resulting in the formation of a K antigen, a capsular polysaccharide antigen carried on the surface of bacterial capsules that masks somatic (O) antigens."
  * Added definition dbxref PMID:17630273 to GO:0010493
  * Added synonym "LE A biosynthetic process" to GO:0010493
  * Copied GO:0010493 to GO:0033692 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010493
* Populated new object GO:0060184 (macro)
  * Changed name of GO:0060184 from "<new term>" to "cell cycle switching"
  * Set definition of GO:0060184 to "The process by which a cell switches cell cycle mode."
  * Added definition dbxref GOC:dph to GO:0060184
  * Added definition dbxref GOC:kmv to GO:0060184
  * Added definition dbxref GOC:tb to GO:0060184
  * Copied GO:0060184 to GO:0022402 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060184
* Changed definition of GO:0001787 from "The rapid expansion of a natural killer cell population by cell division." to "The expansion of a natural killer cell population by cell division."
* Changed definition of GO:0001935 from "The multiplication or reproduction of endothelial cells, resulting in the rapid expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium." to "The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium."
* Changed definition of GO:0002043 from "The multiplication or reproduction of blood vessel endothelial cells, resulting in the rapid expansion of a cell population during sprouting angiogenesis." to "The multiplication or reproduction of blood vessel endothelial cells, resulting in the expansion of a cell population during sprouting angiogenesis."
* Changed definition of GO:0002309 from "The rapid expansion of a T cell population by cell division during an immune response." to "The expansion of a T cell population by cell division during an immune response."
* Changed definition of GO:0002310 from "The rapid expansion of an alpha-beta T cell population by cell division during an immune response." to "The expansion of an alpha-beta T cell population by cell division during an immune response."
* Changed definition of GO:0002311 from "The rapid expansion of an gamma-delta T cell population by cell division during an immune response." to "The expansion of an gamma-delta T cell population by cell division during an immune response."
* Changed definition of GO:0002322 from "The rapid expansion of a B cell population by cell division following B cell activation during an immune response." to "The expansion of a B cell population by cell division following B cell activation during an immune response."
* Changed definition of GO:0002324 from "The rapid expansion of a natural killer cell population by cell division during an immune response." to "The expansion of a natural killer cell population by cell division during an immune response."
* Changed definition of GO:0002359 from "The rapid expansion of a B-1 B cell by cell division. Follows B cell activation." to "The expansion of a B-1 B cell by cell division. Follows B cell activation."
* Changed definition of GO:0007371 from "The rgionalization process by which the area where the ventral furrow will begin invagination is specified." to "The regionalization process by which the area where the ventral furrow will begin invagination is specified."
* Changed definition of GO:0007405 from "The rapid expansion of a neuroblast population by cell division. Neuroblasts are embryonic cells that develop into nerve cells or neurons." to "The expansion of a neuroblast population by cell division. Neuroblasts are embryonic cells that develop into nerve cells or neurons."
* Changed definition of GO:0008283 from "The multiplication or reproduction of cells, resulting in the rapid expansion of a cell population." to "The multiplication or reproduction of cells, resulting in the expansion of a cell population."
* Changed definition of GO:0014009 from "The multiplication or reproduction of glial cells by cell division, resulting in the rapid expansion of their population. Glial cells exist throughout the nervous system, and include Schwann cells, astrocytes, and oligodendrocytes among others." to "The multiplication or reproduction of glial cells by cell division, resulting in the expansion of their population. Glial cells exist throughout the nervous system, and include Schwann cells, astrocytes, and oligodendrocytes among others."
* Changed definition of GO:0014010 from "The multiplication or reproduction of Schwann cells, resulting in the rapid expansion of their population. Schwann cells are a type of glial cell in the peripheral nervous system." to "The multiplication or reproduction of Schwann cells, resulting in the expansion of their population. Schwann cells are a type of glial cell in the peripheral nervous system."
* Changed definition of GO:0014011 from "The multiplication or reproduction of Schwann cells by cell division, resulting in the rapid expansion of their population in response to an axonal lesion. The newly generated Schwann cells support subsequent axon regeneration in the peripheral nervous system." to "The multiplication or reproduction of Schwann cells by cell division, resulting in the expansion of their population in response to an axonal lesion. The newly generated Schwann cells support subsequent axon regeneration in the peripheral nervous system."
* Changed definition of GO:0014841 from "The multiplication or reproduction of satellite cells, resulting in the rapid expansion of the cell population. Satellite cells are quiescent cells that are located between the basal lamina and the plasmalemma of the muscle fibre, which are the main contributors to postnatal muscle growth. In adult muscle, satellite cells become activated to divide and differentiate in response to muscle damage." to "The multiplication or reproduction of satellite cells, resulting in the expansion of the cell population. Satellite cells are quiescent cells that are located between the basal lamina and the plasmalemma of the muscle fibre, which are the main contributors to postnatal muscle growth. In adult muscle, satellite cells become activated to divide and differentiate in response to muscle damage."
* Changed definition of GO:0014844 from "The multiplication or reproduction of myoblast cells, resulting in the rapid expansion of the cell population. This occurs as part of skeletal muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers." to "The multiplication or reproduction of myoblast cells, resulting in the expansion of the cell population. This occurs as part of skeletal muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers."
* Changed definition of GO:0014855 from "The multiplication or reproduction of striated muscle cells, resulting in the rapid expansion of a cell population. Striated muscles contain fibers that are divided by transverse bands into striations, and cardiac and skeletal muscle are types of striated muscle." to "The multiplication or reproduction of striated muscle cells, resulting in the expansion of a cell population. Striated muscles contain fibers that are divided by transverse bands into striations, and cardiac and skeletal muscle are types of striated muscle."
* Changed definition of GO:0014856 from "The multiplication or reproduction of skeletal muscle cells, resulting in the rapid expansion of a cell population." to "The multiplication or reproduction of skeletal muscle cells, resulting in the expansion of a cell population."
* Changed definition of GO:0021534 from "The multiplication or reproduction of cells, resulting in the rapid expansion of a cell population in the hindbrain." to "The multiplication or reproduction of cells, resulting in the expansion of a cell population in the hindbrain."
* Changed definition of GO:0021923 from "The multiplication or reproduction of cells, resulting in the rapid expansion of a cell population in the hindbrain region that is adjacent to the ventricular cavity." to "The multiplication or reproduction of cells, resulting in the expansion of a cell population in the hindbrain region that is adjacent to the ventricular cavity."
* Changed definition of GO:0021924 from "The multiplication or reproduction of neuroblasts resulting in the rapid expansion of a cell population in the external granule layer of the hindbrain. The external granule layer is the layer that originates from the rostral half of the rhombic lip in the first rhombomere." to "The multiplication or reproduction of neuroblasts resulting in the expansion of a cell population in the external granule layer of the hindbrain. The external granule layer is the layer that originates from the rostral half of the rhombic lip in the first rhombomere."
* Changed definition of GO:0021992 from "The process of rapid expansion of cell numbers in the neural plate due to cell division of progenitor cells preferentially in the rostrocaudal direction, resulting in the elongation of the tissue." to "The process of expansion of cell numbers in the neural plate due to cell division of progenitor cells preferentially in the rostrocaudal direction, resulting in the elongation of the tissue."
* Changed definition of GO:0022012 from "The multiplication or reproduction of subpallium cells in the forebrain, resulting in the rapid expansion of a cell population." to "The multiplication or reproduction of subpallium cells in the forebrain, resulting in the expansion of a cell population."
* Changed definition of GO:0022013 from "The multiplication or reproduction of pallium cells in the forebrain, resulting in the rapid expansion of the cell population." to "The multiplication or reproduction of pallium cells in the forebrain, resulting in the expansion of the cell population."
* Changed definition of GO:0022018 from "The multiplication or reproduction of lateral ganglionic eminence cells, resulting in the rapid expansion of the cell population." to "The multiplication or reproduction of lateral ganglionic eminence cells, resulting in the expansion of the cell population."
* Changed definition of GO:0022019 from "The multiplication or reproduction of dorsal lateral ganglionic eminence cells, resulting in the rapid expansion of the cell population." to "The multiplication or reproduction of dorsal lateral ganglionic eminence cells, resulting in the expansion of the cell population."
* Changed definition of GO:0022020 from "The multiplication or reproduction of medial ganglionic eminence cells, resulting in the rapid expansion of a cell population." to "The multiplication or reproduction of medial ganglionic eminence cells, resulting in the expansion of a cell population."
* Changed definition of GO:0022021 from "The multiplication or reproduction of caudal ganglionic eminence cells, resulting in the rapid expansion of a cell population." to "The multiplication or reproduction of caudal ganglionic eminence cells, resulting in the expansion of a cell population."
* Changed definition of GO:0022022 from "The multiplication or reproduction of septal cells, resulting in the rapid expansion of a cell population." to "The multiplication or reproduction of septal cells, resulting in the expansion of a cell population."
* Changed definition of GO:0022032 from "The multiplication or reproduction of telencephalon oligodendrocyte cells, resulting in the rapid expansion of a cell population." to "The multiplication or reproduction of telencephalon oligodendrocyte cells, resulting in the expansion of a cell population."
* Changed definition of GO:0022034 from "The multiplication or reproduction of rhombomere cells, resulting in the rapid expansion of the cell population." to "The multiplication or reproduction of rhombomere cells, resulting in the expansion of the cell population."
* Changed definition of GO:0032943 from "The rapid expansion of a mononuclear cell population by cell division. A mononuclear cell is a leukocyte with a single non-segmented nucleus in the mature form." to "The expansion of a mononuclear cell population by cell division. A mononuclear cell is a leukocyte with a single non-segmented nucleus in the mature form."
* Changed definition of GO:0033002 from "The rapid expansion of a muscle cell population by cell division." to "The expansion of a muscle cell population by cell division."
* Changed definition of GO:0033079 from "The rapid expansion of an immature T cell population by cell division." to "The expansion of an immature T cell population by cell division."
* Changed definition of GO:0033080 from "The rapid expansion of an immature T cell population by cell division in the thymus." to "The expansion of an immature T cell population by cell division in the thymus."
* Changed definition of GO:0033278 from "The multiplication or reproduction of cells, resulting in the rapid expansion of a cell population in the midbrain." to "The multiplication or reproduction of cells, resulting in the expansion of a cell population in the midbrain."
* Changed definition of GO:0033598 from "The multiplication or reproduction of mammary gland epithelial cells, resulting in the rapid expansion of a cell population. Mammary gland epithelial cells make up the covering of surfaces of the mammary gland. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk." to "The multiplication or reproduction of mammary gland epithelial cells, resulting in the expansion of a cell population. Mammary gland epithelial cells make up the covering of surfaces of the mammary gland. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk."
* Changed definition of GO:0033687 from "The multiplication or reproduction of osteoblasts, resulting in the rapid expansion of an osteoblast cell population. An osteoblast is a bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." to "The multiplication or reproduction of osteoblasts, resulting in the expansion of an osteoblast cell population. An osteoblast is a bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone."
* Changed definition of GO:0035172 from "The multiplication or reproduction of hemocytes, resulting in the rapid expansion of the cell population. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen." to "The multiplication or reproduction of hemocytes, resulting in the expansion of the cell population. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen."
* Changed definition of GO:0042098 from "The rapid expansion of a T cell population by cell division. Follows T cell activation." to "The expansion of a T cell population by cell division. Follows T cell activation."
* Changed definition of GO:0042100 from "The rapid expansion of a B cell population by cell division. Follows B cell activation." to "The expansion of a B cell population by cell division. Follows B cell activation."
* Changed definition of GO:0043616 from "The multiplication or reproduction of keratinocytes, resulting in the rapid expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin." to "The multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin."
* Changed definition of GO:0046630 from "The rapid expansion of a gamma-delta T cell population by cell division." to "The expansion of a gamma-delta T cell population by cell division."
* Changed definition of GO:0046633 from "The rapid expansion of an alpha-beta T cell population by cell division." to "The expansion of an alpha-beta T cell population by cell division."
* Changed definition of GO:0046651 from "The rapid expansion of a lymphocyte population by cell division." to "The expansion of a lymphocyte population by cell division."
* Changed definition of GO:0048144 from "The multiplication or reproduction of fibroblast cells, resulting in the rapid expansion of the fibroblast population." to "The multiplication or reproduction of fibroblast cells, resulting in the expansion of the fibroblast population."
* Added synonym "tapetum morphogenesis" to GO:0048655
* Added general dbxref GOC:tb to synonym tapetum morphogenesis of GO:0048655
* Changed synonym scope of GO:0048655 from "Related" to "Exact"
* Added synonym "tapetum formation" to GO:0048656
* Added general dbxref GOC:tb to synonym tapetum formation of GO:0048656
* Changed synonym scope of GO:0048656 from "Related" to "Exact"
* Added synonym "tapetum development" to GO:0048658
* Added general dbxref GOC:tb to synonym tapetum development of GO:0048658
* Changed synonym scope of GO:0048658 from "Related" to "Exact"
* Changed definition of GO:0048659 from "The multiplication or reproduction of smooth muscle cells, resulting in the rapid expansion of a cell population." to "The multiplication or reproduction of smooth muscle cells, resulting in the expansion of a cell population."
* Changed definition of GO:0050673 from "The multiplication or reproduction of epithelial cells, resulting in the rapid expansion of a cell population. Epithelial cells make up the epithelium, the covering of internal and external surfaces of the body, including the lining of vessels and other small cavities. It consists of cells joined by small amounts of cementing substances." to "The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population. Epithelial cells make up the epithelium, the covering of internal and external surfaces of the body, including the lining of vessels and other small cavities. It consists of cells joined by small amounts of cementing substances."
* Changed definition of GO:0050674 from "The multiplication or reproduction of urothelial cells, resulting in the rapid expansion of a cell population. Urothelial cells make up a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria." to "The multiplication or reproduction of urothelial cells, resulting in the expansion of a cell population. Urothelial cells make up a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria."
* Changed definition of GO:0050798 from "The rapid expansion of a T cell population following activation by an antigenic stimulus." to "The expansion of a T cell population following activation by an antigenic stimulus."
* Added definition dbxref GOC:dph to GO:0050798
* Changed definition of GO:0051450 from "The multiplication or reproduction of myoblasts, resulting in the rapid expansion of a myoblast cell population. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers." to "The multiplication or reproduction of myoblasts, resulting in the expansion of a myoblast cell population. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers."
* Deleted GO:0051726 --OBO_REL:is_a--> GO:0022402
* Deleted GO:0051727 --OBO_REL:is_a--> GO:0051726
* Copied GO:0051727 to GO:0060184 with type OBO_REL:is_a
* Deleted GO:0051728 --OBO_REL:is_a--> GO:0051726
* Copied GO:0051728 to GO:0060184 with type OBO_REL:is_a
* Changed definition of GO:0060011 from "The multiplication or reproduction of Sertoli cells, resulting in the rapid expansion of the Sertoli cell population. A Sertoli cell is a supporting cell projecting inward from the basement membrane of seminiferous tubules." to "The multiplication or reproduction of Sertoli cells, resulting in the expansion of the Sertoli cell population. A Sertoli cell is a supporting cell projecting inward from the basement membrane of seminiferous tubules."
* Changed definition of GO:0060038 from "The rapid expansion of a cardiac muscle cell population by cell division." to "The expansion of a cardiac muscle cell population by cell division."