[go-diff] GO update 12/17/2007

Remote CVS for Gene Ontology gocvs at genome.Stanford.EDU
Mon Dec 17 21:30:43 PST 2007 

OBODIFF of gene_ontology_edit.obo version 5.622 by 5.627

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010501
* Created object of type obo:TERM with id GO:0010502
* Created object of type obo:TERM with id GO:0014076
* Created object of type obo:TERM with id GO:0055109
* Created object of type obo:TERM with id GO:0055110
* Created object of type obo:TERM with id GO:0055111
* Created object of type obo:TERM with id GO:0055112
* Created object of type obo:TERM with id GO:0055113
* Populated new object GO:0010501 (macro)
  * Changed name of GO:0010501 from "<new term>" to "RNA secondary structure unwinding"
  * Set definition of GO:0010501 to "The process by which a secondary structure of RNA are broken or 'melted'."
  * Added definition dbxref PMID:17169986 to GO:0010501
  * Copied GO:0010501 to GO:0016070 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010501
* Populated new object GO:0010502 (macro)
  * Changed name of GO:0010502 from "<new term>" to "plastoglobuli"
  * Set definition of GO:0010502 to "Lipid bodies localized within the chloroplast stroma."
  * Added definition dbxref PMID:17259290 to GO:0010502
  * Copied GO:0010502 to GO:0009570 with type part_of
  * Assigned namespace "cellular_component" to GO:0010502
* Populated new object GO:0014076 (macro)
  * Changed name of GO:0014076 from "<new term>" to "response to fluoxetine"
  * Set definition of GO:0014076 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluoxetine stimulus. Fluoxetine increases the extracellular level of the neurotransmitter serotonin by inhibiting its reuptake into the presynaptic cell, increasing the level of serotonin available to bind to the postsynaptic receptor."
  * Added definition dbxref CHEBI:5118 to GO:0014076
  * Added definition dbxref GOC:ef to GO:0014076
  * Added synonym "selective serotonin reuptake inhibitor" to GO:0014076
  * Changed synonym scope of GO:0014076 from "Related" to "Exact"
  * Copied GO:0014076 to GO:0014070 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0014076
* Populated new object GO:0055109 (macro)
  * Changed name of GO:0055109 from "<new term>" to "invagination involved in gastrulation with mouth forming second"
  * Set definition of GO:0055109 to "The infolding of the epithelial sheet into the embryo involved in deuterostomic gastrulation."
  * Added definition dbxref ISBN:0878932437 to GO:0055109
  * Copied GO:0055109 to GO:0002011 with type OBO_REL:is_a
  * Copied GO:0055109 to GO:0001702 with type part_of
  * Assigned namespace "biological_process" to GO:0055109
* Populated new object GO:0055110 (macro)
  * Changed name of GO:0055110 from "<new term>" to "involution involved in gastrulation with mouth forming second"
  * Set definition of GO:0055110 to "The inturning of an epithelial sheet over the basal surface of an outer layer involved in deuterostomic gastrulation."
  * Added definition dbxref ISBN:0878932437 to GO:0055110
  * Copied GO:0055110 to GO:0001702 with type part_of
  * Copied GO:0055110 to GO:0002011 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0055110
* Populated new object GO:0055111 (macro)
  * Changed name of GO:0055111 from "<new term>" to "ingression involved in gastrulation with mouth forming second"
  * Set definition of GO:0055111 to "The migration of individual cells into the embryo involved in deuterostomic gastrulation."
  * Added definition dbxref ISBN:0878932437 to GO:0055111
  * Copied GO:0055111 to GO:0001702 with type part_of
  * Copied GO:0055111 to GO:0042074 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0055111
* Populated new object GO:0055112 (macro)
  * Changed name of GO:0055112 from "<new term>" to "delamination involved in gastrulation with mouth forming second"
  * Set definition of GO:0055112 to "The splitting or migration of one epithelial sheet into two involved in the process of deuterostomic gastrulation."
  * Added definition dbxref ISBN:0878932437 to GO:0055112
  * Copied GO:0055112 to GO:0022408 with type OBO_REL:is_a
  * Copied GO:0055112 to GO:0001702 with type part_of
  * Assigned namespace "biological_process" to GO:0055112
* Populated new object GO:0055113 (macro)
  * Changed name of GO:0055113 from "<new term>" to "epiboly involved in gastrulation with mouth forming second"
  * Set definition of GO:0055113 to "The expansion of one cell sheet over other cells involved in deuterostomic gastrulation."
  * Added definition dbxref ISBN:0878932437 to GO:0055113
  * Copied GO:0055113 to GO:0002011 with type OBO_REL:is_a
  * Copied GO:0055113 to GO:0001702 with type part_of
  * Assigned namespace "biological_process" to GO:0055113
* added secondary id GO:0010003 to GO:0001702
* added secondary id GO:0048276 to GO:0001702
* Added synonym "gastrulation (sensu Mammalia)" to GO:0001702
* Changed synonym scope of GO:0001702 from "Related" to "Narrow"
* Added synonym "gastrulation (sensu Vertebrata)" to GO:0001702
* Changed synonym scope of GO:0001702 from "Related" to "Narrow"
* Changed name of GO:0002075 from "somitomeric trunk muscle development (sensu Mammalia)" to "somitomeric trunk muscle development"
* Changed definition of GO:0002075 from "The process whose specific outcome is the progression of the somitomeric trunk muscle over time, from its formation to the mature structure. The somitomeric trunk muscle is derived from somitomeric mesoderm. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. As in, but not restricted to, mammals (Mammalia, ncbi_taxonomy_id:40674)." to "The process whose specific outcome is the progression of the somitomeric trunk muscle over time, from its formation to the mature structure. The somitomeric trunk muscle is derived from somitomeric mesoderm. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle."
* Added synonym "somitomeric trunk muscle development (sensu Mammalia)" to GO:0002075
* Changed synonym scope of GO:0002075 from "Related" to "Narrow"
* Changed name of GO:0009420 from "flagellar filament" to "flagellin-based flagellum filament"
* Added synonym "flagellar filament" to GO:0009420
* Changed synonym scope of GO:0009420 from "Related" to "Exact"
* Changed name of GO:0009421 from "flagellar filament cap" to "flagellin-based flagellum filament cap"
* Added synonym "flagellar filament cap" to GO:0009421
* Changed synonym scope of GO:0009421 from "Related" to "Exact"
* Changed name of GO:0009422 from "flagellar hook-filament junction" to "flagellin-based flagellum hook-filament junction"
* Added synonym "flagellar hook-filament junction" to GO:0009422
* Changed synonym scope of GO:0009422 from "Related" to "Exact"
* Changed name of GO:0009424 from "flagellar hook" to "flagellin-based flagellum hook"
* Added synonym "flagellar hook" to GO:0009424
* Changed synonym scope of GO:0009424 from "Related" to "Exact"
* Changed name of GO:0009426 from "flagellar basal body, distal rod" to "flagellin-based flagellum basal body, distal rod"
* Added synonym "flagellar basal body, distal rod" to GO:0009426
* Changed synonym scope of GO:0009426 from "Related" to "Exact"
* Changed name of GO:0009427 from "flagellar basal body, distal rod, L ring" to "flagellin-based flagellum basal body, distal rod, L ring"
* Added synonym "flagellar basal body, distal rod, L ring" to GO:0009427
* Changed synonym scope of GO:0009427 from "Related" to "Exact"
* Changed name of GO:0009428 from "flagellar basal body, distal rod, P ring" to "flagellin-based flagellum basal body, distal rod, P ring"
* Added synonym "flagellar basal body, distal rod, P ring" to GO:0009428
* Changed name of GO:0009429 from "flagellar basal body, proximal rod" to "flagellin-based flagellum basal body, proximal rod"
* Added synonym "flagellar basal body, proximal rod" to GO:0009429
* Changed synonym scope of GO:0009429 from "Related" to "Exact"
* Changed name of GO:0009431 from "flagellar basal body, MS ring" to "flagellin-based flagellum basal body, MS ring"
* Added synonym "flagellar basal body, MS ring" to GO:0009431
* Changed synonym scope of GO:0009431 from "Related" to "Exact"
* Changed name of GO:0009433 from "flagellar basal body, C ring" to "flagellin-based flagellum basal body, C ring"
* Added synonym "flagellar basal body, C ring" to GO:0009433
* Changed synonym scope of GO:0009433 from "Related" to "Exact"
* Deleted GO:0009554 --OBO_REL:is_a--> GO:0007126
* Deleted GO:0009554 --OBO_REL:is_a--> GO:0048869
* Copied GO:0009554 to GO:0048236 with type OBO_REL:is_a
* Deleted GO:0009556 --OBO_REL:is_a--> GO:0007126
* Deleted GO:0009556 --OBO_REL:is_a--> GO:0048869
* Copied GO:0009556 to GO:0048236 with type OBO_REL:is_a
* Changed definition of GO:0009943 from "The establishment, maintenance and elaboration of the adaxial / abaxial axis.  Adaxial refers to being situated toward an axis of an anatomical structure.  Abaxial refers to being situated away from an axis of an anatomical structure." to "The establishment, maintenance and elaboration of the adaxial / abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure."
* Changed definition of GO:0009944 from "The process resulting in the establishment of polarity along the adaxial/abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure.  Abaxial refers to being situated away from an axis of an anatomical structure." to "The process resulting in the establishment of polarity along the adaxial/abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure."
* Changed definition of GO:0009955 from "The regionalization process by which differences in cell differentiation along the adaxial/abaxial are generated. Adaxial refers to being situated toward an axis of an anatomical structure.  Abaxial refers to being situated away from an axis of an anatomical structure." to "The regionalization process by which differences in cell differentiation along the adaxial/abaxial are generated. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure."
* Deleted GO:0010003 --OBO_REL:is_a--> GO:0048276
* Destroyed object GO:0010003
* Changed definition of GO:0010494 from "A dense aggregation in the cytosol composed of proteins and RNAs that
appear when the cell is under stress." to "A dense aggregation in the cytosol composed of proteins and RNAs that appear when the cell is under stress."
* added secondary id GO:0030542 to GO:0030541
* Added synonym "plasmid partitioning (sensu Bacteria)" to GO:0030541
* Changed synonym scope of GO:0030541 from "Related" to "Narrow"
* Deleted GO:0030542 --OBO_REL:is_a--> GO:0030541
* Destroyed object GO:0030542
* Changed name of GO:0030694 from "flagellar basal body, rod" to "flagellin-based flagellum basal body, rod"
* Added synonym "flagellar basal body, rod" to GO:0030694
* Changed synonym scope of GO:0030694 from "Related" to "Exact"
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"
* Changed name of GO:0048236 from "spore development (sensu Magnoliophyta)" to "plant-type spore development"
* Changed definition of GO:0048236 from "The process whose specific outcome is the progression of the spore over time, from its formation to the mature structure. The spore gives rise to gametophytes. As in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398)." to "The process whose specific outcome is the progression of the spore over time, from its formation to the mature structure. The spore gives rise to gametophytes."
* Added synonym "plant spore development" to GO:0048236
* Changed synonym scope of GO:0048236 from "Related" to "Exact"
* Added synonym "spore development (sensu Magnoliophyta)" to GO:0048236
* Changed synonym scope of GO:0048236 from "Related" to "Exact"
* Deleted GO:0048236 --OBO_REL:is_a--> GO:0032502
* Deleted GO:0048236 --part_of--> GO:0007275
* Copied GO:0048236 to GO:0007126 with type OBO_REL:is_a
* Copied GO:0048236 to GO:0048869 with type OBO_REL:is_a
* Deleted GO:0048276 --OBO_REL:is_a--> GO:0001702
* Deleted GO:0010003 --OBO_REL:is_a--> GO:0048276
* Destroyed object GO:0048276

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