From gocvs at genome.Stanford.EDU Thu Feb 1 21:31:04 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Thu, 1 Feb 2007 21:31:04 -0800 (PST) Subject: GO update 02/01/2007 Message-ID: <200702020531.VAA18562@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.132 by 5.133 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Changed name of GO:0007487 from "analia development (sensu Endopterygota)" to "analia development" * Changed definition from "The process whose specific outcome is the progression of the analia over time, from its formation to the mature structure. The analia develops from the genital disc. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." to "The process whose specific outcome is the progression of the analia over time, from its formation to the mature structure. The analia is the posterior-most vertral appendage that develops from the genital disc. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." * Added definition dbxref GOC:sensu_mtg to GO:0007487 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at acc299 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1bf536 * Changed name of GO:0009274 from "cell wall (sensu Bacteria)" to "peptidoglycan-based cell wall" * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 17fd343 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 106f446 * Changed name of GO:0009275 from "cell wall (sensu Firmicutes)" to "20-80nm peptidoglycan cell wall" * Changed definition from "A layer of peptidoglycan found outside of the cytoplasmic membrane. The peptidoglycan is relatively thick (approximately 40 nm) and retains the primary stain of the Gram procedure, thus cells appear blue after Gram stain. The cell walls often contain teichoic acids (acidic anionic polysaccharides) bound to the peptidoglycan. As in but not restricted to the Gram-positive bacteria (Firmicutes, ncbi_taxonomy_id:1239)." to "A layer of peptidoglycan found outside of the cytoplasmic membrane. The peptidoglycan is relatively thick (20-80nm) and retains the primary stain of the Gram procedure, thus cells appear blue after Gram stain. The cell walls often contain teichoic acids (acidic anionic polysaccharides) bound to the peptidoglycan. As in but not restricted to the Gram-positive bacteria." * Added definition dbxref PMID:0051406910 to GO:0009275 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 18f516e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 2b14bd * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 5e8982 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 95bf39 * Changed name of GO:0009276 from "cell wall (sensu ProteoBacteria)" to "1-2nm peptidoglycan-containing cell wall" * Changed definition from "The peptidoglycan layer of the Gram-negative cell envelope. In Gram-negative cells the peptidoglycan is relatively thin (approximately 2 nm) and is linked to the outer membrane by lipoproteins. In Gram-negative cells the peptidoglycan is too thin to retain the primary stain in the Gram staining procedure and therefore cells appear red after Gram stain. As in but not restricted to the Gram-negative bacteria (Proteobacteria, ncbi_taxonomy_id:1224)." to "The peptidoglycan layer of the Gram-negative cell envelope. In Gram-negative cells the peptidoglycan is relatively thin (1-2nm) and is linked to the outer membrane by lipoproteins. In Gram-negative cells the peptidoglycan is too thin to retain the primary stain in the Gram staining procedure and therefore cells appear red after Gram stain. As in but not restricted to the Gram-negative bacteria." * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 13d7715 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 552a4a * Changed name of GO:0009277 from "cell wall (sensu Fungi)" to "chitin- and beta-glucan-containing cell wall" * Added definition dbxref GOC:sensu_mtg to GO:0009277 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 14b7910 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1f91d97 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 5cb78 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 715c53 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 6463f0 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at dd45aa * Changed name of GO:0009505 from "cell wall (sensu Magnoliophyta)" to "cellulose and pectin-containing cell wall" * Changed definition from "A more or less rigid membrane enclosing the protoplast of a cell and composed of cellulose and other organic and inorganic substances. As in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398)." to "A more or less rigid stucture enclosing the protoplast of a cell and composed of cellulose and pectin and other organic and inorganic substances. As in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398)." * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 108d1af * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1fe43f9 * Changed name of GO:0009664 from "cell wall organization and biogenesis (sensu Magnoliophyta)" to "cellulose and pectin-containing cell wall organization and biogenesis" * Changed definition from "The assembly and arrangement of the cell wall; as in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398)." to "The assembly and arrangement of the cellulose and pectin-containing cell wall; as in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398)." * Added definition dbxref GOC:mtg_sensu to GO:0009664 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 20b34e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at dbfc51 * Changed name of GO:0009827 from "cell wall modification (sensu Magnoliophyta)" to "cellulose and pectin-containing cell wall modification" * Changed definition from "The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. As in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398)." to "The series of events leading to chemical and structural alterations of an existing cellulose and pectin-containing cell wall that can result in loosening, increased extensibility or disassembly. As in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398)." * Added definition dbxref GOC:mtg_sensu to GO:0009827 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 922e62 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 12335a9 * Changed name of GO:0009828 from "cell wall loosening (sensu Magnoliophyta)" to "cellulose and pectin-containing cell wall loosening" * Changed definition from "The series of events causing chemical and structural alterations of an existing cell wall that results in greater extensibility of the wall. As in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398)." to "The series of events causing chemical and structural alterations of an existing cellulose and pectin-containing cell wall that results in greater extensibility of the wall. As in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398)." * Added definition dbxref GOC:mtg_sensu to GO:0009828 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 98005f * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1406789 * Changed definition from "The external part of the cell wall and/or cell membrane." to "The external part of the cell wall or cell membrane." * Changed name of GO:0030930 from "ADPG pyrophosphorylase complex (sensu Bacteria)" to "homotetrameric ADPG pyrophosphorylase complex" * Changed definition from "A homotetrameric that possesses ADPG pyrophosphorylase activity; as in, but not restricted to, the Bacteria (Bacteria, ncbi_taxonomy_id:2)." to "A protein complex composed of four identical subunits that possesses ADPG pyrophosphorylase activity; as in, but not restricted to, the Bacteria (Bacteria, ncbi_taxonomy_id:2)." * Added definition dbxref GOC:mtg_sensu to GO:0030930 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 14d5717 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 90b1ee * Changed name of GO:0030931 from "ADPG pyrophosphorylase complex (sensu Eukaryota)" to "heterotetrameric ADPG pyrophosphorylase complex" * Changed definition from "A heterotetrameric that possesses ADPG pyrophosphorylase activity; as in, but not restricted to, the eukaryotes (Eukaryota, ncbi_taxonomy_id:2759)." to "A protein complex composed of four different subunits that possesses ADPG pyrophosphorylase activity; as in, but not restricted to, the eukaryotes (Eukaryota, ncbi_taxonomy_id:2759)." * Added definition dbxref GOC:mtg_sensu to GO:0030931 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 19184a6 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 9bd926 * Changed name of GO:0031504 from "cell wall organization and biogenesis (sensu Bacteria)" to "peptidoglycan-based cell wall organization and biogenesis" * Changed definition from "The assembly and arrangement of the cell wall; as in, but not restricted to, the taxon Bacteria (Bacteria, ncbi_taxonomy_id:2)." to "The assembly and arrangement of the peptidoglycan-based cell wall; as in, but not restricted to, the taxon Bacteria (Bacteria, ncbi_taxonomy_id:2)." * Added definition dbxref GOC:mtg_sensu to GO:0031504 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1cd8a9f * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1480717 * Changed name of GO:0031505 from "cell wall organization and biogenesis (sensu Fungi)" to "chitin- and beta-glucan-containing cell wall organization and biogenesis" * Added definition dbxref GOC:sensu_mtg to GO:0031505 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c9af0e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 3ca48 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at d54c5d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1887339 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 144c0b1 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at c6bbae * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 14bdc81 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 179c7fa * Changed name of GO:0035212 from "cell competition (sensu Metazoa)" to "cell competition in a multicellular organism" * Changed definition from "Competitive interactions within multicellular organisms betweeen cell populations that differ in growth rates, leading to the elimination of the slowest-growing cells. As in, but not restricted to, animals (Metazoa, ncbi_taxonomy_id:33208)." to "Competitive interactions within multicellular organisms between cell populations that differ in growth rates, leading to the elimination of the slowest-growing cells. As in, but not restricted to, animals (Metazoa, ncbi_taxonomy_id:33208)." * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 3817e0 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at a77c78 * Copied cell competition in a multicellular organism (GO:0035212) (as part_of), to multicellular organismal development (GO:0007275) * Changed name of GO:0042774 from "ATP synthesis coupled electron transport (sensu Bacteria)" to "plasma membrane ATP synthesis coupled electron transport" * Added definition dbxref GOC:sensu_mtg to GO:0042774 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1dcbb07 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 7af394 * Changed name of GO:0042775 from "ATP synthesis coupled electron transport (sensu Eukaryota)" to "organelle ATP synthesis coupled electron transport" * Added definition dbxref GOC:sensu_mtg to GO:0042775 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at d9a9e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1222006 * Changed definition from "ATP-binding cassette (ABC) transporter complex (sensu Eukarya) A complex for the transport of metabolites into and out of the cell, typically comprised of four domains; two membrane-associated domains and two ATP-binding domains at the intracellular face of the membrane, that form a central pore through the plasma membrane. Each of the four core domains may be encoded as a separate polypeptide or the domains can be fused in any one of a number of ways into multidomain polypeptides. As in, but not restricted to, the eukaryotes (Eukaryota, ncbi_taxonomy_id:2759)." to "A complex for the transport of metabolites into and out of the cell, typically comprised of four domains; two membrane-associated domains and two ATP-binding domains at the intracellular face of the membrane, that form a central pore through the plasma membrane. Each of the four core domains may be encoded as a separate polypeptide or the domains can be fused in any one of a number of ways into multidomain polypeptides. As in, but not restricted to, the eukaryotes (Eukaryota, ncbi_taxonomy_id:2759)." * Changed name of GO:0045496 from "male analia development (sensu Endopterygota)" to "male analia development" * Changed definition from "The process whose specific outcome is the progression of the analia of the male over time, from formation to the mature structure. The analia develop from the genital disc. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." to "The process whose specific outcome is the progression of the analia of the male over time, from formation to the mature structure. The analia is the posterior-most vertral appendage that develops from the genital disc. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." * Added definition dbxref GOC:sensu_mtg to GO:0045496 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 164a5fe * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at cdd0a4 * Changed name of GO:0045497 from "female analia development (sensu Endopterygota)" to "female analia development" * Changed definition from "The process whose specific outcome is the progression of the analia of the female over time, from formation to the mature structure. The analia develop from the genital disc. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." to "The process whose specific outcome is the progression of the analia of the female over time, from formation to the mature structure. The analia is the posterior-most vertral appendage that develops from the genital disc. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." * Added definition dbxref GOC:sensu_mtg to GO:0045497 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 3cda11 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 110ace2 * org.geneontology.oboedit.datamodel.history.DestroyObjectHistoryItem at 1c62d0d * Changed name of GO:0048082 from "regulation of adult cuticle pigmentation" to "regulation of adult chitin-containing cuticle pigmentation" * Added definition dbxref GOC:mtg_sensu to GO:0048082 * Changed name of GO:0048083 from "negative regulation of adult cuticle pigmentation" to "negative regulation of adult chitin-containing cuticle pigmentation" * Added definition dbxref GOC:mtg_sensu to GO:0048083 * Changed name of GO:0048084 from "positive regulation of adult cuticle pigmentation" to "positive regulation of adult chitin-containing cuticle pigmentation" * Added definition dbxref GOC:mtg_sensu to GO:0048084 * Changed name of GO:0048085 from "adult cuticle pigmentation" to "adult chitin-containing cuticle pigmentation" * added secondary id GO:0048068 to GO:0048085 * Changed definition from "Establishment of the adult pattern of pigmentation in the cuticle of an organism." to "Establishment of the adult pattern of pigmentation in the chitin-containing cuticle of an organism. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." * Added definition dbxref GOC:mtg_sensu to GO:0048085 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1b7dd80 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 2f089d * Copied adult chitin-containing cuticle pigmentation (GO:0048085) (as part_of), to cuticle tanning (GO:0007593) * Changed name of GO:0048809 from "analia morphogenesis (sensu Endopterygota)" to "analia morphogenesis" * Changed definition from "The process by which the anatomical structures of analia are generated and organized. Morphogenesis pertains to the creation of form. The analia develops from the genital disc. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." to "The process by which the anatomical structures of analia are generated and organized. Morphogenesis pertains to the creation of form. The analia is the posterior-most vertral appendage that develops from the genital disc. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." * Added definition dbxref GOC:sensu_mtg to GO:0048809 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1de81aa * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 112f31f * Changed name of GO:0048810 from "female analia morphogenesis (sensu Endopterygota)" to "female analia morphogenesis" * Changed definition from "The process by which the anatomical structures of the analia of the female are generated and organized. Morphogenesis pertains to the creation of form. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." to "The process by which the anatomical structures of the analia of the female are generated and organized. The analia is the posterior-most vertral appendage that develops from the genital disc. Morphogenesis pertains to the creation of form. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." * Added definition dbxref GOC:sensu_mtg to GO:0048810 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1178b3c * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at b65153 * Changed name of GO:0048811 from "male analia morphogenesis (sensu Endopterygota)" to "male analia morphogenesis" * Changed definition from "The process by which the anatomical structures of the analia of the male are generated and organized. Morphogenesis pertains to the creation of form. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." to "The process by which the anatomical structures of the analia of the male are generated and organized. The analia is the posterior-most vertral appendage that develops from the genital disc. Morphogenesis pertains to the creation of form. As in, but not restricted to, the Holometabola (Endopterygota, ncbi_taxonomy_id:33392)." * Added definition dbxref GOC:sensu_mtg to GO:0048811 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 19552c6 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 6d5d91 From gocvs at genome.Stanford.EDU Fri Feb 2 21:31:00 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Fri, 2 Feb 2007 21:31:00 -0800 (PST) Subject: GO update 02/02/2007 Message-ID: <200702030531.VAA02936@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.133 by 5.135 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Created new object GO:0032844 (macro) * Created object GO:0032844 of type obo:TERM. * Changed name of GO:0032844 from "" to "regulation of homeostatic process" * Added definition "Any process that modulates the frequency, rate, or extent of a homeostatic process." * Added definition dbxref GOC:mah to GO:0032844 * Copied regulation of homeostatic process (GO:0032844) (as OBO_REL:is_a), to regulation of biological process (GO:0050789) * Copied regulation of homeostatic process (GO:0032844) (as part_of), to homeostatic process (GO:0042592) * Changed namespace of GO:0032844 from "null" to "biological_process" * Created new object GO:0032845 (macro) * Created object GO:0032845 of type obo:TERM. * Changed name of GO:0032845 from "" to "negative regulation of homeostatic process" * Added definition "Any process that stops, prevents, or reduces the frequency, rate, or extent of a homeostatic process." * Added definition dbxref GOC:mah to GO:0032845 * Copied negative regulation of homeostatic process (GO:0032845) (as OBO_REL:is_a), to regulation of homeostatic process (GO:0032844) * Changed namespace of GO:0032845 from "null" to "biological_process" * Created new object GO:0032846 (macro) * Created object GO:0032846 of type obo:TERM. * Changed name of GO:0032846 from "" to "positive regulation of homeostatic process" * Added definition "Any process that activates or increases the frequency, rate, or extent of a homeostatic process." * Added definition dbxref GOC:mah to GO:0032846 * Copied positive regulation of homeostatic process (GO:0032846) (as OBO_REL:is_a), to regulation of homeostatic process (GO:0032844) * Copied positive regulation of homeostatic process (GO:0032846) (as OBO_REL:is_a), to positive regulation of biological process (GO:0048518) * Changed namespace of GO:0032846 from "null" to "biological_process" * Created new object GO:0032847 (macro) * Created object GO:0032847 of type obo:TERM. * Changed name of GO:0032847 from "" to "regulation of cellular pH reduction" * Added definition "Any process that modulates the frequency, rate, or extent of a process that reduces the internal pH of a cell." * Added definition dbxref GOC:mah to GO:0032847 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1032723 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1fe8d34 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at e852f8 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 9f3705 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at d5464d * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1fa98d8 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 148a897 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1347e45 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 14e16e5 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c11a2f * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 9e1e34 * Copied regulation of cellular pH reduction (GO:0032847) (as OBO_REL:is_a), to regulation of homeostatic process (GO:0032844) * Copied regulation of cellular pH reduction (GO:0032847) (as OBO_REL:is_a), to cellular pH reduction (GO:0051452) * Changed namespace of GO:0032847 from "null" to "biological_process" * Created new object GO:0032848 (macro) * Created object GO:0032848 of type obo:TERM. * Changed name of GO:0032848 from "" to "negative regulation of cellular pH reduction" * Added definition "Any process that stops, prevents, or reduces the frequency, rate, or extent of a process that reduces the internal pH of a cell." * Added definition dbxref GOC:mah to GO:0032848 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at d10e31 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at fadd71 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1e0338d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 5894e5 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1977df5 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at ce762e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at b0fabc * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 11d8c98 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at f973a1 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 11682d1 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at e68291 * Copied negative regulation of cellular pH reduction (GO:0032848) (as OBO_REL:is_a), to negative regulation of homeostatic process (GO:0032845) * Copied negative regulation of cellular pH reduction (GO:0032848) (as OBO_REL:is_a), to regulation of cellular pH reduction (GO:0032847) * Changed namespace of GO:0032848 from "null" to "biological_process" * Created new object GO:0032849 (macro) * Created object GO:0032849 of type obo:TERM. * Changed name of GO:0032849 from "" to "positive regulation of cellular pH reduction" * Added definition "Any process that activates or increases the frequency, rate, or extent of a process that reduces the internal pH of a cell." * Added definition dbxref GOC:mah to GO:0032849 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1862b30 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 17d5f25 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1f18c71 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 13b695b * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 181f1b1 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 22aa99 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1ee42ad * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 15b97ee * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 53911b * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 5bc154 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1f18dad * Copied positive regulation of cellular pH reduction (GO:0032849) (as OBO_REL:is_a), to positive regulation of homeostatic process (GO:0032846) * Copied positive regulation of cellular pH reduction (GO:0032849) (as OBO_REL:is_a), to regulation of cellular pH reduction (GO:0032847) * Changed namespace of GO:0032849 from "null" to "biological_process" * Created new object GO:0032850 (macro) * Created object GO:0032850 of type obo:TERM. * Changed name of GO:0032850 from "" to "positive regulation of ARF GTPase activity" * Added definition "Any process that activates or increases the activity of the GTPase ARF." * Added definition dbxref GOC:mah to GO:0032850 * Copied positive regulation of ARF GTPase activity (GO:0032850) (as OBO_REL:is_a), to regulation of ARF GTPase activity (GO:0032312) * Copied positive regulation of ARF GTPase activity (GO:0032850) (as OBO_REL:is_a), to positive regulation of Ras GTPase activity (GO:0032320) * Changed namespace of GO:0032850 from "null" to "biological_process" * Created new object GO:0032851 (macro) * Created object GO:0032851 of type obo:TERM. * Changed name of GO:0032851 from "" to "positive regulation of Rab GTPase activity" * Added definition "Any process that activates or increases the activity of a GTPase of the Rab family." * Added definition dbxref GOC:mah to GO:0032851 * Copied positive regulation of Rab GTPase activity (GO:0032851) (as OBO_REL:is_a), to positive regulation of Ras GTPase activity (GO:0032320) * Copied positive regulation of Rab GTPase activity (GO:0032851) (as OBO_REL:is_a), to regulation of Rab GTPase activity (GO:0032313) * Changed namespace of GO:0032851 from "null" to "biological_process" * Created new object GO:0032852 (macro) * Created object GO:0032852 of type obo:TERM. * Changed name of GO:0032852 from "" to "positive regulation of Ral GTPase activity" * Added definition "Any process that activates or increases the activity of a GTPase of the Ral family." * Added definition dbxref GOC:mah to GO:0032852 * Copied positive regulation of Ral GTPase activity (GO:0032852) (as OBO_REL:is_a), to positive regulation of Ras GTPase activity (GO:0032320) * Copied positive regulation of Ral GTPase activity (GO:0032852) (as OBO_REL:is_a), to regulation of Ral GTPase activity (GO:0032315) * Changed namespace of GO:0032852 from "null" to "biological_process" * Created new object GO:0032853 (macro) * Created object GO:0032853 of type obo:TERM. * Changed name of GO:0032853 from "" to "positive regulation of Ran GTPase activity" * Added definition "Any process that activates or increases the activity of a GTPase of the Ran family." * Added definition dbxref GOC:mah to GO:0032853 * Copied positive regulation of Ran GTPase activity (GO:0032853) (as OBO_REL:is_a), to positive regulation of Ras GTPase activity (GO:0032320) * Copied positive regulation of Ran GTPase activity (GO:0032853) (as OBO_REL:is_a), to regulation of Ran GTPase activity (GO:0032316) * Changed namespace of GO:0032853 from "null" to "biological_process" * Created new object GO:0032854 (macro) * Created object GO:0032854 of type obo:TERM. * Changed name of GO:0032854 from "" to "positive regulation of Rap GTPase activity" * Added definition "Any process that activates or increases the activity of a GTPase of the Rap family." * Added definition dbxref GOC:mah to GO:0032854 * Copied positive regulation of Rap GTPase activity (GO:0032854) (as OBO_REL:is_a), to regulation of Rap GTPase activity (GO:0032317) * Copied positive regulation of Rap GTPase activity (GO:0032854) (as OBO_REL:is_a), to positive regulation of Ras GTPase activity (GO:0032320) * Changed namespace of GO:0032854 from "null" to "biological_process" * Created new object GO:0032855 (macro) * Created object GO:0032855 of type obo:TERM. * Changed name of GO:0032855 from "" to "positive regulation of Rac GTPase activity" * Added definition "Any process that activates or increases the activity of a GTPase of the Rac family." * Added definition dbxref GOC:mah to GO:0032855 * Copied positive regulation of Rac GTPase activity (GO:0032855) (as OBO_REL:is_a), to positive regulation of Rho GTPase activity (GO:0032321) * Changed namespace of GO:0032855 from "null" to "biological_process" * Created new object GO:0032856 (macro) * Created object GO:0032856 of type obo:TERM. * Changed name of GO:0032856 from "" to "activation of Ras GTPase" * Added comment "Note that this term should not be confused with the molecular function term 'Ras GTPase activator activity ; GO:0005099', which refers specifically to the activity of Ras GAPs." * Added definition "Any process that initiates the activity of an inactive GTPase of the Ras superfamily through the replacement of GDP by GTP." * Added definition dbxref GOC:mah to GO:0032856 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1701e4c * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1d5146b * Copied activation of Ras GTPase (GO:0032856) (as OBO_REL:is_a), to positive regulation of Ras GTPase activity (GO:0032320) * Changed namespace of GO:0032856 from "null" to "biological_process" * Created new object GO:0032857 (macro) * Created object GO:0032857 of type obo:TERM. * Changed name of GO:0032857 from "" to "activation of ARF GTPase" * Added comment "Note that this term should not be confused with the molecular function term 'ARF GTPase activator activity ; GO:0008060', which refers specifically to the activity of ARF GAPs." * Added definition "Any process that initiates the activity of the inactive enzyme ARF GTPase through the replacement of GDP by GTP." * Added definition dbxref GOC:mah to GO:0032857 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 2f8d20 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1da602f * Copied activation of ARF GTPase (GO:0032857) (as OBO_REL:is_a), to activation of Ras GTPase (GO:0032856) * Copied activation of ARF GTPase (GO:0032857) (as OBO_REL:is_a), to positive regulation of ARF GTPase activity (GO:0032850) * Changed namespace of GO:0032857 from "null" to "biological_process" * Created new object GO:0032858 (macro) * Created object GO:0032858 of type obo:TERM. * Changed name of GO:0032858 from "" to "activation of Rab GTPase" * Added comment "Note that this term should not be confused with the molecular function term 'Rab GTPase activator activity ; GO:0005097', which refers specifically to the activity of Rab GAPs." * Added definition "Any process that initiates the activity of an inactive GTPase of the Rab family through the replacement of GDP by GTP." * Added definition dbxref GOC:mah to GO:0032858 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1e0afa2 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 2af123 * Copied activation of Rab GTPase (GO:0032858) (as OBO_REL:is_a), to positive regulation of Rab GTPase activity (GO:0032851) * Copied activation of Rab GTPase (GO:0032858) (as OBO_REL:is_a), to activation of Ras GTPase (GO:0032856) * Changed namespace of GO:0032858 from "null" to "biological_process" * Created new object GO:0032859 (macro) * Created object GO:0032859 of type obo:TERM. * Changed name of GO:0032859 from "" to "activation of Ral GTPase" * Added comment "Note that this term should not be confused with the molecular function term 'Ral GTPase activator activity ; GO:0017123', which refers specifically to the activity of Ral GAPs." * Added definition "Any process that initiates the activity of an inactive GTPase of the Ral family through the replacement of GDP by GTP." * Added definition dbxref GOC:mah to GO:0032859 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 13d6b63 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1556275 * Copied activation of Ral GTPase (GO:0032859) (as OBO_REL:is_a), to activation of Ras GTPase (GO:0032856) * Copied activation of Ral GTPase (GO:0032859) (as OBO_REL:is_a), to positive regulation of Ral GTPase activity (GO:0032852) * Changed namespace of GO:0032859 from "null" to "biological_process" * Created new object GO:0032860 (macro) * Created object GO:0032860 of type obo:TERM. * Changed name of GO:0032860 from "" to "activation of Ran GTPase" * Added comment "Note that this term should not be confused with the molecular function term 'Ran GTPase activator activity ; GO:0005098', which refers specifically to the activity of Ran GAPs." * Added definition "Any process that initiates the activity of an inactive GTPase of the Ran family through the replacement of GDP by GTP." * Added definition dbxref GOC:mah to GO:0032860 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at b2f315 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 752494 * Copied activation of Ran GTPase (GO:0032860) (as OBO_REL:is_a), to positive regulation of Ran GTPase activity (GO:0032853) * Copied activation of Ran GTPase (GO:0032860) (as OBO_REL:is_a), to activation of Ras GTPase (GO:0032856) * Changed namespace of GO:0032860 from "null" to "biological_process" * Created new object GO:0032861 (macro) * Created object GO:0032861 of type obo:TERM. * Changed name of GO:0032861 from "" to "activation of Rap GTPase" * Added comment "Note that this term should not be confused with the molecular function term 'Rap GTPase activator activity ; GO:0046582', which refers specifically to the activity of Rap GAPs." * Added definition "Any process that initiates the activity of an inactive GTPase of the Ran family through the replacement of GDP by GTP." * Added definition dbxref GOC:mah to GO:0032861 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at b4a0fe * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at b5b33e * Copied activation of Rap GTPase (GO:0032861) (as OBO_REL:is_a), to activation of Ras GTPase (GO:0032856) * Copied activation of Rap GTPase (GO:0032861) (as OBO_REL:is_a), to positive regulation of Rap GTPase activity (GO:0032854) * Changed namespace of GO:0032861 from "null" to "biological_process" * Created new object GO:0032862 (macro) * Created object GO:0032862 of type obo:TERM. * Changed name of GO:0032862 from "" to "activation of Rho GTPase" * Added comment "Note that this term should not be confused with the molecular function term 'Rho GTPase activator activity ; GO:0005100', which refers specifically to the activity of Rho GAPs." * Added definition "Any process that initiates the activity of an inactive GTPase of the Rho family through the replacement of GDP by GTP." * Added definition dbxref GOC:mah to GO:0032862 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 10ad7eb * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at e59f7b * Copied activation of Rho GTPase (GO:0032862) (as OBO_REL:is_a), to activation of Ras GTPase (GO:0032856) * Copied activation of Rho GTPase (GO:0032862) (as OBO_REL:is_a), to positive regulation of Rho GTPase activity (GO:0032321) * Changed namespace of GO:0032862 from "null" to "biological_process" * Created new object GO:0032863 (macro) * Created object GO:0032863 of type obo:TERM. * Changed name of GO:0032863 from "" to "activation of Rac GTPase" * Added definition "Any process that initiates the activity of an inactive GTPase of the Rac family through the replacement of GDP by GTP." * Added definition dbxref GOC:mah to GO:0032863 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1494ada * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at d14a91 * Copied activation of Rac GTPase (GO:0032863) (as OBO_REL:is_a), to positive regulation of Rac GTPase activity (GO:0032855) * Copied activation of Rac GTPase (GO:0032863) (as OBO_REL:is_a), to activation of Rho GTPase (GO:0032862) * Changed namespace of GO:0032863 from "null" to "biological_process" * Created new object GO:0032864 (macro) * Created object GO:0032864 of type obo:TERM. * Changed name of GO:0032864 from "" to "activation of Cdc42 GTPase" * Added definition "Any process that initiates the activity of the inactive GTPase Cdc42 through the replacement of GDP by GTP." * Added definition dbxref GOC:mah to GO:0032864 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 768c93 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 107385f * Copied activation of Cdc42 GTPase (GO:0032864) (as OBO_REL:is_a), to positive regulation of Rac GTPase activity (GO:0032855) * Copied activation of Cdc42 GTPase (GO:0032864) (as OBO_REL:is_a), to activation of Rho GTPase (GO:0032862) * Changed namespace of GO:0032864 from "null" to "biological_process" * Created new object GO:0032865 (macro) * Created object GO:0032865 of type obo:TERM. * Changed name of GO:0032865 from "" to "Mdm10/Mdm12/Mmm1 complex" * Added definition "A protein complex that links mtDNA and mitochondrial outer and inner membranes to the cytoskeletal system." * Added definition dbxref PMID:13679517 to GO:0032865 * Copied Mdm10/Mdm12/Mmm1 complex (GO:0032865) (as OBO_REL:is_a), to protein complex (GO:0043234) * Copied Mdm10/Mdm12/Mmm1 complex (GO:0032865) (as OBO_REL:is_a), to mitochondrial membrane part (GO:0044455) * Copied Mdm10/Mdm12/Mmm1 complex (GO:0032865) (as part_of), to mitochondrial outer membrane (GO:0005741) * Changed namespace of GO:0032865 from "null" to "cellular_component" * Created new object GO:0055027 (macro) * Created object GO:0055027 of type obo:TERM. * Changed name of GO:0055027 from "" to "chlamydospore formation" * Added definition "The process that gives rise to the chlamydospore. This process pertains to the initial formation of a structure from unspecified parts." * Added definition dbxref GOC:devbiol to GO:0055027 * Copied chlamydospore formation (GO:0055027) (as OBO_REL:is_a), to anatomical structure formation (GO:0048646) * Copied chlamydospore formation (GO:0055027) (as part_of), to chlamydospore development (sensu Candida albicans) (GO:0001410) * Changed namespace of GO:0055027 from "null" to "biological_process" * Changed name of GO:0001410 from "chlamydospore formation (sensu Candida albicans)" to "chlamydospore development (sensu Candida albicans)" * Deleted chlamydospore development (sensu Candida albicans) (GO:0001410) from cell differentiation (GO:0030154) with OBO_REL:is_a * Copied chlamydospore development (sensu Candida albicans) (GO:0001410) (as OBO_REL:is_a), to cell development (GO:0048468) * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 105e893 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at e841c9 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 371c9e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 37ea01 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at e41a07 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 168e4e6 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 18be6ec * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1e5b299 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 130660a * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 7b2878 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 19de19a * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 4686ea * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 4398e6 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1eb3ccb * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 131be40 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at c15f70 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 160dc82 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 2ce5c5 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1a0edbb * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 5794ed * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1f2663e * Copied glycolipid 2-alpha-mannosyltransferase activity (GO:0004377) (as OBO_REL:is_a), to alpha-1,2-mannosyltransferase activity (GO:0000026) * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 116aae3 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 12d4ee1 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 195a1aa * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at a8b019 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at c145f4 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at d7cced * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1cef7bc * Changed definition from "The chemical reactions and pathways resulting in the formation of rhamonogalacturonan I component of pectin, a rhamnose-rich pectic polysaccharide." to "The chemical reactions and pathways resulting in the formation of rhamnogalacturonan I component of pectin, a rhamnose-rich pectic polysaccharide." * Deleted rhamnogalacturonan I biosynthetic process (GO:0010246) from pectin biosynthetic process (GO:0045489) with part_of * Copied rhamnogalacturonan I biosynthetic process (GO:0010246) (as OBO_REL:is_a), to pectin biosynthetic process (GO:0045489) * Changed definition from "The formation from simpler components of rhamonogalacturonan II, a low molecular mass (5 - 10KDa) pectic polysaccharide, conserved in the primary walls of dicotyledenous and monocotyledenous plants and gymnosperms." to "The formation from simpler components of rhamnogalacturonan II, a low molecular mass (5 - 10KDa) pectic polysaccharide, conserved in the primary walls of dicotyledenous and monocotyledenous plants and gymnosperms." * Copied negative regulation of heat dissipation (GO:0031655) (as OBO_REL:is_a), to negative regulation of biological process (GO:0048519) * Deleted homeostatic process (GO:0042592) from biological_process (GO:0008150) with OBO_REL:is_a * Copied homeostatic process (GO:0042592) (as OBO_REL:is_a), to regulation of biological quality (GO:0065008) * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at ea60c6 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1777d2d * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1bb161b * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1a86d74 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at aa0fd6 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at f5dd35 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 18dc832 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 15254a5 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 333e24 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 34afa3 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at f71743 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 18520d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at b30aec * Changed definition from "Any process that modulates the frequency, rate or extent of a biological attribute, such as size, mass, shape or color." to "Any process that modulates the frequency, rate or extent of a biological quality. A biological quality is a measurable attribute of an organism or part of an organism, such as size, mass, shape, color, etc." From gocvs at genome.Stanford.EDU Mon Feb 5 21:30:57 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Mon, 5 Feb 2007 21:30:57 -0800 (PST) Subject: GO update 02/05/2007 Message-ID: <200702060530.VAA17887@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.135 by 5.138 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Created new object GO:0032866 (macro) * Created object GO:0032866 of type obo:TERM. * Changed name of GO:0032866 from "" to "xylose reductase activity" * Added definition "Catalysis of the reaction: D-xylitol + NADP+ = D-xylose + NADPH + H+." * Added definition dbxref PMID:12724380 to GO:0032866 * Added definition dbxref PMID:15184173 to GO:0032866 * Copied xylose reductase activity (GO:0032866) (as OBO_REL:is_a), to aldehyde reductase activity (GO:0004032) * Changed namespace of GO:0032866 from "null" to "molecular_function" * Created new object GO:0032867 (macro) * Created object GO:0032867 of type obo:TERM. * Changed name of GO:0032867 from "" to "arabinose reductase activity" * Added definition "Catalysis of the reaction: L-arabitol + NADP+ = L-arabinose + NADPH + H+." * Added definition dbxref PMID:12724380 to GO:0032867 * Added definition dbxref PMID:15184173 to GO:0032867 * Copied arabinose reductase activity (GO:0032867) (as OBO_REL:is_a), to aldehyde reductase activity (GO:0004032) * Changed namespace of GO:0032867 from "null" to "molecular_function" * Created new object GO:0032868 (macro) * Created object GO:0032868 of type obo:TERM. * Changed name of GO:0032868 from "" to "response to insulin stimulus" * Added definition "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms." * Added definition dbxref GOC:mah to GO:0032868 * Added definition dbxref Oxford Dictionary of Biochemistry and Molecular Biology (ISBN:0198506732) to GO:0032868 * Copied response to insulin stimulus (GO:0032868) (as OBO_REL:is_a), to response to peptide hormone stimulus (GO:0043434) * Changed namespace of GO:0032868 from "null" to "biological_process" * Created new object GO:0032869 (macro) * Created object GO:0032869 of type obo:TERM. * Changed name of GO:0032869 from "" to "cellular response to insulin stimulus" * Added definition "A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms." * Added definition dbxref GOC:mah to GO:0032869 * Added definition dbxref Oxford Dictionary of Biochemistry and Molecular Biology (ISBN:0198506732) to GO:0032869 * Copied cellular response to insulin stimulus (GO:0032869) (as OBO_REL:is_a), to cellular response to hormone stimulus (GO:0032870) * Copied cellular response to insulin stimulus (GO:0032869) (as OBO_REL:is_a), to response to insulin stimulus (GO:0032868) * Changed namespace of GO:0032869 from "null" to "biological_process" * Created new object GO:0032870 (macro) * Created object GO:0032870 of type obo:TERM. * Changed name of GO:0032870 from "" to "cellular response to hormone stimulus" * Added definition "A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus." * Added definition dbxref GOC:mah to GO:0032870 * Copied cellular response to hormone stimulus (GO:0032870) (as OBO_REL:is_a), to cellular response to stimulus (GO:0051716) * Copied cellular response to hormone stimulus (GO:0032870) (as OBO_REL:is_a), to response to hormone stimulus (GO:0009725) * Changed namespace of GO:0032870 from "null" to "biological_process" * Created new object GO:0032871 (macro) * Created object GO:0032871 of type obo:TERM. * Changed name of GO:0032871 from "" to "regulation of karyogamy" * Added definition "Any process that modulates the frequency, rate or extent of karyogamy, the creation of a single nucleus from multiple nuclei as a result of membrane fusion." * Added definition dbxref GOC:mah to GO:0032871 * Copied regulation of karyogamy (GO:0032871) (as OBO_REL:is_a), to regulation of cell organization and biogenesis (GO:0051128) * Copied regulation of karyogamy (GO:0032871) (as part_of), to karyogamy (GO:0000741) * Changed namespace of GO:0032871 from "null" to "biological_process" * Created new object GO:0032872 (macro) * Created object GO:0032872 of type obo:TERM. * Changed name of GO:0032872 from "" to "regulation of stress-activated MAPK cascade" * Added definition "Any process that modulates the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade." * Added definition dbxref GOC:mah to GO:0032872 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 73fc58 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at bc29f4 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 166777a * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 2e0806 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 10fe87 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1b67607 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1fef080 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 5f9cf1 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 138b85c * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at cfc698 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at f7631f * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 18c90ec * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 17ea7fc * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 46bc37 * Copied regulation of stress-activated MAPK cascade (GO:0032872) (as OBO_REL:is_a), to regulation of MAPKKK cascade (GO:0043408) * Copied regulation of stress-activated MAPK cascade (GO:0032872) (as part_of), to stress-activated MAPK cascade (GO:0051403) * Changed namespace of GO:0032872 from "null" to "biological_process" * Created new object GO:0032873 (macro) * Created object GO:0032873 of type obo:TERM. * Changed name of GO:0032873 from "" to "negative regulation of stress-activated MAPK cascade" * Added definition "Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade." * Added definition dbxref GOC:mah to GO:0032873 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1eecf6f * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 174826d * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1edc7f * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1e2966 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 300245 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1e5149f * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at ad0802 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1e8f518 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 133340e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 9e973d * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1db2f57 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1012f0c * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at b7d803 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1c6de90 * Copied negative regulation of stress-activated MAPK cascade (GO:0032873) (as OBO_REL:is_a), to regulation of stress-activated MAPK cascade (GO:0032872) * Copied negative regulation of stress-activated MAPK cascade (GO:0032873) (as OBO_REL:is_a), to negative regulation of MAPKKK cascade (GO:0043409) * Changed namespace of GO:0032873 from "null" to "biological_process" * Created new object GO:0032874 (macro) * Created object GO:0032874 of type obo:TERM. * Changed name of GO:0032874 from "" to "positive regulation of stress-activated MAPK cascade" * Added definition "Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade." * Added definition dbxref GOC:mah to GO:0032874 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at c4af88 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at e01251 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at d2b587 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 18bbdc5 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1580391 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1525ba5 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1fede87 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1c37d5f * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 15c1810 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 12fea1d * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at b343a9 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 11f39bd * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 107d91b * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 3ea112 * Copied positive regulation of stress-activated MAPK cascade (GO:0032874) (as OBO_REL:is_a), to positive regulation of MAPKKK cascade (GO:0043410) * Copied positive regulation of stress-activated MAPK cascade (GO:0032874) (as OBO_REL:is_a), to regulation of stress-activated MAPK cascade (GO:0032872) * Changed namespace of GO:0032874 from "null" to "biological_process" * Created new object GO:0032875 (macro) * Created object GO:0032875 of type obo:TERM. * Changed name of GO:0032875 from "" to "regulation of DNA endoreduplication" * Added definition "Any process that modulates the frequency, rate or extent of DNA endoreduplication." * Added definition dbxref GOC:mah to GO:0032875 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c0b64e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 100da8e * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 10cbcd8 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 14215c1 * Copied regulation of DNA endoreduplication (GO:0032875) (as OBO_REL:is_a), to regulation of DNA replication (GO:0006275) * Copied regulation of DNA endoreduplication (GO:0032875) (as part_of), to DNA endoreduplication (GO:0042023) * Changed namespace of GO:0032875 from "null" to "biological_process" * Created new object GO:0032876 (macro) * Created object GO:0032876 of type obo:TERM. * Changed name of GO:0032876 from "" to "negative regulation of DNA endoreduplication" * Added definition "Any process that stops, prevents, or reduces the frequency, rate or extent of DNA endoreduplication." * Added definition dbxref GOC:mah to GO:0032876 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1a23bc7 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 2b2c3 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1264f66 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 26cccc * Copied negative regulation of DNA endoreduplication (GO:0032876) (as OBO_REL:is_a), to negative regulation of DNA replication (GO:0008156) * Copied negative regulation of DNA endoreduplication (GO:0032876) (as OBO_REL:is_a), to regulation of DNA endoreduplication (GO:0032875) * Changed namespace of GO:0032876 from "null" to "biological_process" * Created new object GO:0032877 (macro) * Created object GO:0032877 of type obo:TERM. * Changed name of GO:0032877 from "" to "positive regulation of DNA endoreduplication" * Added definition "Any process that activates or increases the frequency, rate or extent of DNA endoreduplication." * Added definition dbxref GOC:mah to GO:0032877 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 14f9978 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at e4d58d * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 18057ef * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 10d3ad7 * Copied positive regulation of DNA endoreduplication (GO:0032877) (as OBO_REL:is_a), to regulation of DNA endoreduplication (GO:0032875) * Copied positive regulation of DNA endoreduplication (GO:0032877) (as OBO_REL:is_a), to positive regulation of DNA replication (GO:0045740) * Changed namespace of GO:0032877 from "null" to "biological_process" * Created new object GO:0032878 (macro) * Created object GO:0032878 of type obo:TERM. * Changed name of GO:0032878 from "" to "regulation of establishment and/or maintenance of cell polarity" * Added definition "Any process that modulates the frequency, rate or extent of the specification, formation and maintenance of anisotropic intracellular organization or cell growth patterns." * Added definition dbxref GOC:mah to GO:0032878 * Copied regulation of establishment and/or maintenance of cell polarity (GO:0032878) (as part_of), to establishment and/or maintenance of cell polarity (GO:0007163) * Copied regulation of establishment and/or maintenance of cell polarity (GO:0032878) (as OBO_REL:is_a), to regulation of cell morphogenesis (GO:0022604) * Changed namespace of GO:0032878 from "null" to "biological_process" * Created new object GO:0032879 (macro) * Created object GO:0032879 of type obo:TERM. * Changed name of GO:0032879 from "" to "regulation of localization" * Added definition "Any process that modulates the frequency, rate or extent of any process by which a cell, a substance, or a cellular entity is transported to, or maintained in, a specific location." * Added definition dbxref GOC:mah to GO:0032879 * Copied regulation of localization (GO:0032879) (as part_of), to localization (GO:0051179) * Copied regulation of localization (GO:0032879) (as OBO_REL:is_a), to regulation of biological process (GO:0050789) * Changed namespace of GO:0032879 from "null" to "biological_process" * Created new object GO:0032880 (macro) * Created object GO:0032880 of type obo:TERM. * Changed name of GO:0032880 from "" to "regulation of protein localization" * Added definition "Any process that modulates the frequency, rate or extent of any process by which a cell, a protein is transported to, or maintained in, a specific location." * Added definition dbxref GOC:mah to GO:0032880 * Copied regulation of protein localization (GO:0032880) (as OBO_REL:is_a), to regulation of localization (GO:0032879) * Changed namespace of GO:0032880 from "null" to "biological_process" * Created new object GO:0032881 (macro) * Created object GO:0032881 of type obo:TERM. * Changed name of GO:0032881 from "" to "regulation of polysaccharide metabolic process" * Added definition "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving polysaccharides." * Added definition dbxref GOC:mah to GO:0032881 * Copied regulation of polysaccharide metabolic process (GO:0032881) (as OBO_REL:is_a), to regulation of carbohydrate metabolic process (GO:0006109) * Copied regulation of polysaccharide metabolic process (GO:0032881) (as part_of), to polysaccharide metabolic process (GO:0005976) * Changed namespace of GO:0032881 from "null" to "biological_process" * Created new object GO:0032882 (macro) * Created object GO:0032882 of type obo:TERM. * Changed name of GO:0032882 from "" to "regulation of chitin metabolic process" * Added definition "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving chitin." * Added definition dbxref GOC:mah to GO:0032882 * Copied regulation of chitin metabolic process (GO:0032882) (as OBO_REL:is_a), to regulation of polysaccharide metabolic process (GO:0032881) * Copied regulation of chitin metabolic process (GO:0032882) (as part_of), to chitin metabolic process (GO:0006030) * Changed namespace of GO:0032882 from "null" to "biological_process" * Created new object GO:0032883 (macro) * Created object GO:0032883 of type obo:TERM. * Changed name of GO:0032883 from "" to "regulation of chitin biosynthetic process" * Added definition "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chitin." * Added definition dbxref GOC:mah to GO:0032883 * Copied regulation of chitin biosynthetic process (GO:0032883) (as part_of), to chitin biosynthetic process (GO:0006031) * Copied regulation of chitin biosynthetic process (GO:0032883) (as OBO_REL:is_a), to regulation of chitin metabolic process (GO:0032882) * Copied regulation of chitin biosynthetic process (GO:0032883) (as OBO_REL:is_a), to regulation of polysaccharide biosynthetic process (GO:0032885) * Changed namespace of GO:0032883 from "null" to "biological_process" * Created new object GO:0032884 (macro) * Created object GO:0032884 of type obo:TERM. * Changed name of GO:0032884 from "" to "regulation of cell wall chitin biosynthetic process" * Added definition "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cell wall chitin." * Added definition dbxref GOC:mah to GO:0032884 * Copied regulation of cell wall chitin biosynthetic process (GO:0032884) (as OBO_REL:is_a), to regulation of chitin biosynthetic process (GO:0032883) * Changed namespace of GO:0032884 from "null" to "biological_process" * Created new object GO:0032885 (macro) * Created object GO:0032885 of type obo:TERM. * Changed name of GO:0032885 from "" to "regulation of polysaccharide biosynthetic process" * Added definition "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of polysaccharides." * Added definition dbxref GOC:mah to GO:0032885 * Copied regulation of polysaccharide biosynthetic process (GO:0032885) (as OBO_REL:is_a), to regulation of polysaccharide metabolic process (GO:0032881) * Changed namespace of GO:0032885 from "null" to "biological_process" * Created new object GO:0032886 (macro) * Created object GO:0032886 of type obo:TERM. * Changed name of GO:0032886 from "" to "regulation of microtubule-based process" * Added definition "Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the microtubule cytoskeleton." * Added definition dbxref GOC:mah to GO:0032886 * Copied regulation of microtubule-based process (GO:0032886) (as OBO_REL:is_a), to microtubule-based process (GO:0007017) * Copied regulation of microtubule-based process (GO:0032886) (as OBO_REL:is_a), to regulation of cytoskeleton organization and biogenesis (GO:0051493) * Changed namespace of GO:0032886 from "null" to "biological_process" * Created new object GO:0032887 (macro) * Created object GO:0032887 of type obo:TERM. * Changed name of GO:0032887 from "" to "regulation of spindle elongation" * Added definition "Any process that modulates the frequency, rate or extent of the cell cycle process whereby the distance is lengthened between poles of the spindle." * Added definition dbxref GOC:mah to GO:0032887 * Copied regulation of spindle elongation (GO:0032887) (as OBO_REL:is_a), to regulation of microtubule-based process (GO:0032886) * Copied regulation of spindle elongation (GO:0032887) (as part_of), to spindle elongation (GO:0051231) * Changed namespace of GO:0032887 from "null" to "biological_process" * Created new object GO:0032888 (macro) * Created object GO:0032888 of type obo:TERM. * Changed name of GO:0032888 from "" to "regulation of mitotic spindle elongation" * Added definition "Any process that modulates the frequency, rate or extent of the cell cycle process whereby the distance is lengthened between poles of the mitotic spindle." * Added definition dbxref GOC:mah to GO:0032888 * Copied regulation of mitotic spindle elongation (GO:0032888) (as OBO_REL:is_a), to regulation of spindle elongation (GO:0032887) * Copied regulation of mitotic spindle elongation (GO:0032888) (as part_of), to mitotic spindle elongation (GO:0000022) * Changed namespace of GO:0032888 from "null" to "biological_process" * Created new object GO:0032889 (macro) * Created object GO:0032889 of type obo:TERM. * Changed name of GO:0032889 from "" to "regulation of vacuole fusion, non-autophagic" * Added definition "Any process that modulates the frequency, rate or extent of the fusion of two vacuole membranes to form a single vacuole." * Added definition dbxref GOC:mah to GO:0032889 * Copied regulation of vacuole fusion, non-autophagic (GO:0032889) (as OBO_REL:is_a), to regulation of cell organization and biogenesis (GO:0051128) * Copied regulation of vacuole fusion, non-autophagic (GO:0032889) (as part_of), to vacuole fusion, non-autophagic (GO:0042144) * Changed namespace of GO:0032889 from "null" to "biological_process" * Created new object GO:0032890 (macro) * Created object GO:0032890 of type obo:TERM. * Changed name of GO:0032890 from "" to "regulation of organic acid transport" * Added definition "Any process that modulates the frequency, rate or extent of the directed movement of organic acids into, out of, within or between cells." * Added definition dbxref GOC:mah to GO:0032890 * Copied regulation of organic acid transport (GO:0032890) (as part_of), to organic acid transport (GO:0015849) * Copied regulation of organic acid transport (GO:0032890) (as OBO_REL:is_a), to regulation of transport (GO:0051049) * Changed namespace of GO:0032890 from "null" to "biological_process" * Created new object GO:0032891 (macro) * Created object GO:0032891 of type obo:TERM. * Changed name of GO:0032891 from "" to "negative regulation of organic acid transport" * Added definition "Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of organic acids into, out of, within or between cells." * Added definition dbxref GOC:mah to GO:0032891 * Copied negative regulation of organic acid transport (GO:0032891) (as OBO_REL:is_a), to regulation of organic acid transport (GO:0032890) * Copied negative regulation of organic acid transport (GO:0032891) (as OBO_REL:is_a), to negative regulation of transport (GO:0051051) * Changed namespace of GO:0032891 from "null" to "biological_process" * Created new object GO:0032892 (macro) * Created object GO:0032892 of type obo:TERM. * Changed name of GO:0032892 from "" to "positive regulation of organic acid transport" * Added definition "Any process that activates or increases the frequency, rate or extent of the directed movement of organic acids into, out of, within or between cells." * Added definition dbxref GOC:mah to GO:0032892 * Copied positive regulation of organic acid transport (GO:0032892) (as OBO_REL:is_a), to regulation of organic acid transport (GO:0032890) * Copied positive regulation of organic acid transport (GO:0032892) (as OBO_REL:is_a), to positive regulation of transport (GO:0051050) * Changed namespace of GO:0032892 from "null" to "biological_process" * Created new object GO:0032893 (macro) * Created object GO:0032893 of type obo:TERM. * Changed name of GO:0032893 from "" to "regulation of gluconate transport" * Added definition "Any process that modulates the frequency, rate or extent of the directed movement of gluconate into, out of, within or between cells." * Added definition dbxref GOC:mah to GO:0032893 * Copied regulation of gluconate transport (GO:0032893) (as OBO_REL:is_a), to regulation of organic acid transport (GO:0032890) * Copied regulation of gluconate transport (GO:0032893) (as part_of), to gluconate transport (GO:0015725) * Changed namespace of GO:0032893 from "null" to "biological_process" * Created new object GO:0032894 (macro) * Created object GO:0032894 of type obo:TERM. * Changed name of GO:0032894 from "" to "negative regulation of gluconate transport" * Added definition "Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of gluconate into, out of, within or between cells." * Added definition dbxref GOC:mah to GO:0032894 * Copied negative regulation of gluconate transport (GO:0032894) (as OBO_REL:is_a), to regulation of gluconate transport (GO:0032893) * Copied negative regulation of gluconate transport (GO:0032894) (as OBO_REL:is_a), to negative regulation of organic acid transport (GO:0032891) * Changed namespace of GO:0032894 from "null" to "biological_process" * Created new object GO:0032895 (macro) * Created object GO:0032895 of type obo:TERM. * Changed name of GO:0032895 from "" to "positive regulation of gluconate transport" * Added definition "Any process that activates or increases the frequency, rate or extent of the directed movement of gluconate into, out of, within or between cells." * Added definition dbxref GOC:mah to GO:0032895 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 10b66b5 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1843328 * Copied positive regulation of gluconate transport (GO:0032895) (as OBO_REL:is_a), to regulation of gluconate transport (GO:0032893) * Copied positive regulation of gluconate transport (GO:0032895) (as OBO_REL:is_a), to positive regulation of organic acid transport (GO:0032892) * Changed namespace of GO:0032895 from "null" to "biological_process" * Created new object GO:0032896 (macro) * Created object GO:0032896 of type obo:TERM. * Changed name of GO:0032896 from "" to "palmitoyl-CoA 9-desaturase activity" * Added definition "Catalysis of the reaction: palmitoyl-CoA + AH2 + O2 = palmitoleic acid (16:1delta9) + A + 2 H2O." * Added definition dbxref GOC:kva to GO:0032896 * Added general dbxref GOC:mah to GO:0032896 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 3ab608 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 84ea36 * Copied palmitoyl-CoA 9-desaturase activity (GO:0032896) (as OBO_REL:is_a), to CoA desaturase activity (GO:0016215) * Changed namespace of GO:0032896 from "null" to "molecular_function" * Created new object GO:0032897 (macro) * Created object GO:0032897 of type obo:TERM. * Changed name of GO:0032897 from "" to "negative regulation of viral transcription" * Added definition "Any process that stops, prevents or reduces the frequency, rate or extent of viral transcription." * Added definition dbxref GOC:mah to GO:0032897 * Copied negative regulation of viral transcription (GO:0032897) (as OBO_REL:is_a), to regulation of viral transcription (GO:0046782) * Copied negative regulation of viral transcription (GO:0032897) (as OBO_REL:is_a), to positive regulation of viral life cycle (GO:0048524) * Copied negative regulation of viral transcription (GO:0032897) (as OBO_REL:is_a), to negative regulation of transcription, DNA-dependent (GO:0045892) * Changed namespace of GO:0032897 from "null" to "biological_process" * Created new object GO:0032898 (macro) * Created object GO:0032898 of type obo:TERM. * Changed name of GO:0032898 from "" to "neurotrophin production" * Added definition "The appearance of a neurotrophin due to biosynthesis or secretion by cells in a neuron's target field, resulting in an increase in its intracellular or extracellular levels." * Added definition dbxref GOC:ecd to GO:0032898 * Added definition dbxref GOC:mah to GO:0032898 * Copied neurotrophin production (GO:0032898) (as OBO_REL:is_a), to multicellular organismal process (GO:0032501) * Changed namespace of GO:0032898 from "null" to "biological_process" * Created new object GO:0032899 (macro) * Created object GO:0032899 of type obo:TERM. * Changed name of GO:0032899 from "" to "regulation of neurotrophin production" * Added definition "Any process that modulates the frequency, rate, or extent of production of a neurotrophin." * Added definition dbxref GOC:mah to GO:0032899 * Copied regulation of neurotrophin production (GO:0032899) (as OBO_REL:is_a), to regulation of biological process (GO:0050789) * Copied regulation of neurotrophin production (GO:0032899) (as part_of), to neurotrophin production (GO:0032898) * Changed namespace of GO:0032899 from "null" to "biological_process" * Created new object GO:0032900 (macro) * Created object GO:0032900 of type obo:TERM. * Changed name of GO:0032900 from "" to "negative regulation of neurotrophin production" * Added definition "Any process that stops, prevents, or reduces the frequency, rate, or extent of production of a neurotrophin." * Added definition dbxref GOC:mah to GO:0032900 * Copied negative regulation of neurotrophin production (GO:0032900) (as OBO_REL:is_a), to negative regulation of biological process (GO:0048519) * Copied negative regulation of neurotrophin production (GO:0032900) (as OBO_REL:is_a), to regulation of neurotrophin production (GO:0032899) * Changed namespace of GO:0032900 from "null" to "biological_process" * Created new object GO:0032901 (macro) * Created object GO:0032901 of type obo:TERM. * Changed name of GO:0032901 from "" to "positive regulation of neurotrophin production" * Added definition "Any process that activates or increases the frequency, rate, or extent of production of a neurotrophin." * Added definition dbxref GOC:mah to GO:0032901 * Copied positive regulation of neurotrophin production (GO:0032901) (as OBO_REL:is_a), to regulation of neurotrophin production (GO:0032899) * Copied positive regulation of neurotrophin production (GO:0032901) (as OBO_REL:is_a), to positive regulation of biological process (GO:0048518) * Changed namespace of GO:0032901 from "null" to "biological_process" * Created new object GO:0032902 (macro) * Created object GO:0032902 of type obo:TERM. * Changed name of GO:0032902 from "" to "nerve growth factor production" * Added definition "The appearance of nerve growth factor due to biosynthesis or secretion by cells in a neuron's target field, resulting in an increase in its intracellular or extracellular levels." * Added definition dbxref GOC:ecd to GO:0032902 * Added definition dbxref GOC:mah to GO:0032902 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 11d594d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1d1d90f * Copied nerve growth factor production (GO:0032902) (as OBO_REL:is_a), to neurotrophin production (GO:0032898) * Changed namespace of GO:0032902 from "null" to "biological_process" * Created new object GO:0032903 (macro) * Created object GO:0032903 of type obo:TERM. * Changed name of GO:0032903 from "" to "regulation of nerve growth factor production" * Added definition "Any process that modulates the frequency, rate, or extent of production of nerve growth factor." * Added definition dbxref GOC:mah to GO:0032903 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 18571 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1dfbdb7 * Copied regulation of nerve growth factor production (GO:0032903) (as OBO_REL:is_a), to regulation of biological process (GO:0050789) * Copied regulation of nerve growth factor production (GO:0032903) (as OBO_REL:is_a), to regulation of neurotrophin production (GO:0032899) * Copied regulation of nerve growth factor production (GO:0032903) (as part_of), to nerve growth factor production (GO:0032902) * Changed namespace of GO:0032903 from "null" to "biological_process" * Created new object GO:0032904 (macro) * Created object GO:0032904 of type obo:TERM. * Changed name of GO:0032904 from "" to "negative regulation of nerve growth factor production" * Added definition "Any process that stops, prevents, or reduces the frequency, rate, or extent of production of nerve growth factor." * Added definition dbxref GOC:mah to GO:0032904 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 206c9a * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at ba2f0c * Copied negative regulation of nerve growth factor production (GO:0032904) (as OBO_REL:is_a), to regulation of nerve growth factor production (GO:0032903) * Copied negative regulation of nerve growth factor production (GO:0032904) (as OBO_REL:is_a), to negative regulation of neurotrophin production (GO:0032900) * Changed namespace of GO:0032904 from "null" to "biological_process" * Created new object GO:0032905 (macro) * Created object GO:0032905 of type obo:TERM. * Changed name of GO:0032905 from "" to "transforming growth factor-beta1 production" * Added definition "The appearance of transforming growth factor-beta1 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." * Added definition dbxref GOC:mah to GO:0032905 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 166e328 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1cb59dd * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 178cf8d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 8257aa * Copied transforming growth factor-beta1 production (GO:0032905) (as OBO_REL:is_a), to positive regulation of neurotrophin production (GO:0032901) * Copied transforming growth factor-beta1 production (GO:0032905) (as OBO_REL:is_a), to cytokine production (GO:0001816) * Copied transforming growth factor-beta1 production (GO:0032905) (as OBO_REL:is_a), to regulation of nerve growth factor production (GO:0032903) * Changed namespace of GO:0032905 from "null" to "biological_process" * Created new object GO:0032906 (macro) * Created object GO:0032906 of type obo:TERM. * Changed name of GO:0032906 from "" to "transforming growth factor-beta2 production" * Added definition "The appearance of transforming growth factor-beta2 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." * Added definition dbxref GOC:mah to GO:0032906 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 149677e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 29b41e * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1f052ff * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at d8e872 * Copied transforming growth factor-beta2 production (GO:0032906) (as OBO_REL:is_a), to cytokine production (GO:0001816) * Changed namespace of GO:0032906 from "null" to "gene_ontology" * Created new object GO:0032907 (macro) * Created object GO:0032907 of type obo:TERM. * Changed name of GO:0032907 from "" to "transforming growth factor-beta3 production" * Added definition "The appearance of transforming growth factor-beta3 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." * Added definition dbxref GOC:mah to GO:0032907 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 8494cd * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 452f68 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 2b8638 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 178f6d4 * Copied transforming growth factor-beta3 production (GO:0032907) (as OBO_REL:is_a), to cytokine production (GO:0001816) * Changed namespace of GO:0032907 from "null" to "gene_ontology" * Created new object GO:0032908 (macro) * Created object GO:0032908 of type obo:TERM. * Changed name of GO:0032908 from "" to "regulation of transforming growth factor-beta1 production" * Added definition "Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta1." * Added definition dbxref GOC:mah to GO:0032908 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 9517a0 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 422b86 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 379080 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1efe369 * Copied regulation of transforming growth factor-beta1 production (GO:0032908) (as OBO_REL:is_a), to regulation of cytokine production (GO:0001817) * Copied regulation of transforming growth factor-beta1 production (GO:0032908) (as part_of), to transforming growth factor-beta1 production (GO:0032905) * Changed namespace of GO:0032908 from "null" to "gene_ontology" * Created new object GO:0032909 (macro) * Created object GO:0032909 of type obo:TERM. * Changed name of GO:0032909 from "" to "regulation of transforming growth factor-beta2 production" * Added definition "Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta2." * Added definition dbxref GOC:mah to GO:0032909 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 3b1c1b * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at b27055 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at ece2f6 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 28903c * Copied regulation of transforming growth factor-beta2 production (GO:0032909) (as OBO_REL:is_a), to regulation of cytokine production (GO:0001817) * Copied regulation of transforming growth factor-beta2 production (GO:0032909) (as part_of), to transforming growth factor-beta2 production (GO:0032906) * Changed namespace of GO:0032909 from "null" to "gene_ontology" * Created new object GO:0032910 (macro) * Created object GO:0032910 of type obo:TERM. * Changed name of GO:0032910 from "" to "regulation of transforming growth factor-beta3 production" * Added definition "Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta3." * Added definition dbxref GOC:mah to GO:0032910 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 115608e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 763a60 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1f2885a * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1d5db0b * Copied regulation of transforming growth factor-beta3 production (GO:0032910) (as part_of), to transforming growth factor-beta3 production (GO:0032907) * Copied regulation of transforming growth factor-beta3 production (GO:0032910) (as OBO_REL:is_a), to regulation of cytokine production (GO:0001817) * Changed namespace of GO:0032910 from "null" to "gene_ontology" * Created new object GO:0032911 (macro) * Created object GO:0032911 of type obo:TERM. * Changed name of GO:0032911 from "" to "negative regulation of transforming growth factor-beta1 production" * Added definition "Any process that stops, prevents, or reduces the frequency, rate, or extent of production of transforming growth factor-beta1." * Added definition dbxref GOC:mah to GO:0032911 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 11fd81f * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1a60d09 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at a20429 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at bf470d * Copied negative regulation of transforming growth factor-beta1 production (GO:0032911) (as OBO_REL:is_a), to regulation of transforming growth factor-beta1 production (GO:0032908) * Copied negative regulation of transforming growth factor-beta1 production (GO:0032911) (as OBO_REL:is_a), to negative regulation of cytokine production (GO:0001818) * Changed namespace of GO:0032911 from "null" to "gene_ontology" * Created new object GO:0032912 (macro) * Created object GO:0032912 of type obo:TERM. * Changed name of GO:0032912 from "" to "negative regulation of transforming growth factor-beta2 production" * Added definition "Any process that stops, prevents, or reduces the frequency, rate, or extent of production of transforming growth factor-beta2." * Added definition dbxref GOC:mah to GO:0032912 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1d1b746 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1578cfd * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at e968ff * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1ec41eb * Copied negative regulation of transforming growth factor-beta2 production (GO:0032912) (as OBO_REL:is_a), to regulation of transforming growth factor-beta2 production (GO:0032909) * Copied negative regulation of transforming growth factor-beta2 production (GO:0032912) (as OBO_REL:is_a), to negative regulation of cytokine production (GO:0001818) * Changed namespace of GO:0032912 from "null" to "gene_ontology" * Created new object GO:0032913 (macro) * Created object GO:0032913 of type obo:TERM. * Changed name of GO:0032913 from "" to "negative regulation of transforming growth factor-beta3 production" * Added definition "Any process that stops, prevents, or reduces the frequency, rate, or extent of production of transforming growth factor-beta3." * Added definition dbxref GOC:mah to GO:0032913 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1dbb584 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 16a2ca3 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1988c50 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 241066 * Copied negative regulation of transforming growth factor-beta3 production (GO:0032913) (as OBO_REL:is_a), to regulation of transforming growth factor-beta3 production (GO:0032910) * Copied negative regulation of transforming growth factor-beta3 production (GO:0032913) (as OBO_REL:is_a), to negative regulation of cytokine production (GO:0001818) * Changed namespace of GO:0032913 from "null" to "gene_ontology" * Created new object GO:0032914 (macro) * Created object GO:0032914 of type obo:TERM. * Changed name of GO:0032914 from "" to "positive regulation of transforming growth factor-beta1 production" * Added definition "Any process that activates or increases the frequency, rate, or extent of production of transforming growth factor-beta1." * Added definition dbxref GOC:mah to GO:0032914 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1b0b65c * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 945d24 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 6ee8d5 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1780cb0 * Copied positive regulation of transforming growth factor-beta1 production (GO:0032914) (as OBO_REL:is_a), to regulation of transforming growth factor-beta1 production (GO:0032908) * Copied positive regulation of transforming growth factor-beta1 production (GO:0032914) (as OBO_REL:is_a), to positive regulation of cytokine production (GO:0001819) * Changed namespace of GO:0032914 from "null" to "gene_ontology" * Created new object GO:0032915 (macro) * Created object GO:0032915 of type obo:TERM. * Changed name of GO:0032915 from "" to "positive regulation of transforming growth factor-beta2 production" * Added definition "Any process that activates or increases the frequency, rate, or extent of production of transforming growth factor-beta2." * Added definition dbxref GOC:mah to GO:0032915 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 88fbab * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 142ac57 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 40a11f * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1121f48 * Copied positive regulation of transforming growth factor-beta2 production (GO:0032915) (as OBO_REL:is_a), to positive regulation of cytokine production (GO:0001819) * Copied positive regulation of transforming growth factor-beta2 production (GO:0032915) (as OBO_REL:is_a), to regulation of transforming growth factor-beta2 production (GO:0032909) * Changed namespace of GO:0032915 from "null" to "gene_ontology" * Created new object GO:0032916 (macro) * Created object GO:0032916 of type obo:TERM. * Changed name of GO:0032916 from "" to "positive regulation of transforming growth factor-beta3 production" * Added definition "Any process that activates or increases the frequency, rate, or extent of production of transforming growth factor-beta3." * Added definition dbxref GOC:mah to GO:0032916 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at c3b5a5 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at ca8e16 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 365e59 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 16c60aa * Copied positive regulation of transforming growth factor-beta3 production (GO:0032916) (as OBO_REL:is_a), to positive regulation of cytokine production (GO:0001819) * Copied positive regulation of transforming growth factor-beta3 production (GO:0032916) (as OBO_REL:is_a), to regulation of transforming growth factor-beta3 production (GO:0032910) * Changed namespace of GO:0032916 from "null" to "gene_ontology" * Created new object GO:0043685 (macro) * Created object GO:0043685 of type obo:TERM. * Changed name of GO:0043685 from "" to "conversion of glutamyl-tRNA to glutaminyl-tRNA" * Added comment "Note that this process has been observed in some archeal and bacterial species." * Added definition "Process whereby glutamate charged on a tRNA(Gln) is converted to glutaminyl-tRNA." * Added definition dbxref PMID:3340166 to GO:0043685 * Added definition dbxref PMID:9342308 to GO:0043685 * Added definition dbxref RESID:jsg to GO:0043685 * Added GO:0043685 to category gosubset_prok * Copied conversion of glutamyl-tRNA to glutaminyl-tRNA (GO:0043685) (as OBO_REL:is_a), to charged-tRNA modification (GO:0019988) * Changed namespace of GO:0043685 from "null" to "biological_process" * Created new object GO:0043686 (macro) * Created object GO:0043686 of type obo:TERM. * Changed name of GO:0043686 from "" to "co-translational protein modification" * Added definition "The covalent alteration of one or more amino acids occurring in a protein before the protein has been completely translated and released from the ribosome." * Added definition dbxref RESID:jsg to GO:0043686 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 3e47fd * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at e84edd * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 191a947 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 8dbd * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 599d5a * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1699154 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c43709 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at f959cf * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 773a0d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 18430d9 * Copied co-translational protein modification (GO:0043686) (as OBO_REL:is_a), to protein modification (GO:0006464) * Changed namespace of GO:0043686 from "null" to "biological_process" * Created new object GO:0043687 (macro) * Created object GO:0043687 of type obo:TERM. * Changed name of GO:0043687 from "" to "post-translational protein modification" * Added definition "The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome." * Added definition dbxref RESID:jsg to GO:0043687 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1a303a5 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1446125 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 45f606 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 11b2d16 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 12d1054 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 18b3c06 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 11e305 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 4f919d * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1e0eafd * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 163ace8 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at ecf4ae * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at b40153 * Copied post-translational protein modification (GO:0043687) (as OBO_REL:is_a), to protein modification (GO:0006464) * Changed namespace of GO:0043687 from "null" to "biological_process" * Created new object GO:0043688 (macro) * Created object GO:0043688 of type obo:TERM. * Changed name of GO:0043688 from "" to "conversion of aspartyl-tRNA to asparaginyl-tRNA" * Added comment "Note that this process has been observed in some archeal and bacterial species." * Added definition "Process whereby aspartate charged on a tRNA(Asn) is converted to asparaginyl-tRNA." * Added definition dbxref PMID:9789001 to GO:0043688 * Added definition dbxref RESID:jsg to GO:0043688 * Added GO:0043688 to category gosubset_prok * Copied conversion of aspartyl-tRNA to asparaginyl-tRNA (GO:0043688) (as OBO_REL:is_a), to charged-tRNA modification (GO:0019988) * Changed namespace of GO:0043688 from "null" to "biological_process" * Created new object GO:0043689 (macro) * Created object GO:0043689 of type obo:TERM. * Changed name of GO:0043689 from "" to "cell-cell adhesion during flocculation" * Added definition "The attachment of one cell to another cell via adhesion molecules, occurring as a part of the non-sexual aggregation of single-celled organisms." * Added definition dbxref GOC:jl to GO:0043689 * Copied cell-cell adhesion during flocculation (GO:0043689) (as OBO_REL:is_a), to cell-cell adhesion (GO:0016337) * Copied cell-cell adhesion during flocculation (GO:0043689) (as part_of), to flocculation (GO:0000128) * Changed namespace of GO:0043689 from "null" to "biological_process" * Changed definition from "Non-sexual aggregation of single-celled organisms in culture." to "The non-sexual aggregation of single-celled organisms." * Deleted flocculation (GO:0000128) from cell-cell adhesion (GO:0016337) with OBO_REL:is_a * Deleted protein deneddylation (GO:0000338) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein deneddylation (GO:0000338) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein peptidyl-prolyl isomerization (GO:0000413) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein peptidyl-prolyl isomerization (GO:0000413) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted formation of oxidatively modified proteins during replicative cell aging (GO:0001318) from protein modification (GO:0006464) with OBO_REL:is_a * Copied formation of oxidatively modified proteins during replicative cell aging (GO:0001318) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted cumulus cell differentiation (GO:0001549) from oogenesis stage (GO:0022605) with OBO_REL:is_a * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c2fedd * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at ea9777 * Copied conversion of met-tRNAf to fmet-tRNA (GO:0001718) (as OBO_REL:is_a), to N-terminal protein formylation (GO:0018004) * Changed definition from "The continuation of translation beyond a stop codon by the use of a special tRNA that recognizes the UGA codon as a modified amino acid, rather than as a termination codon." to "The continuation of translation beyond a stop codon by the use of a special tRNA that recognizes the UAG and UGA codons as modified amino acids, rather than as termination codons." * org.geneontology.oboedit.datamodel.history.DelDbxrefHistoryItem at 17e1475 * org.geneontology.oboedit.datamodel.history.DelDbxrefHistoryItem at 71457b * Added definition dbxref RESID:jsg to GO:0006451 * Changed definition from "The covalent alteration of one or more amino acid residues within a protein, resulting in a change in the properties of that protein." to "The covalent alteration of one or more amino acids occurring in a protein. This includes pre-translational, co-translational and post-translational modifications." * Deleted protein thiol-disulfide exchange (GO:0006467) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein thiol-disulfide exchange (GO:0006467) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid phosphorylation (GO:0006468) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid phosphorylation (GO:0006468) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid dephosphorylation (GO:0006470) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid dephosphorylation (GO:0006470) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid ADP-ribosylation (GO:0006471) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid ADP-ribosylation (GO:0006471) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid deacetylation (GO:0006476) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid deacetylation (GO:0006476) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid sulfation (GO:0006477) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid sulfation (GO:0006477) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Copied N-terminal protein myristoylation (GO:0006499) (as OBO_REL:is_a), to N-terminal protein lipidation (GO:0006498) * Copied N-terminal protein palmitoylation (GO:0006500) (as OBO_REL:is_a), to N-terminal protein lipidation (GO:0006498) * Deleted ubiquitin cycle (GO:0006512) from protein modification (GO:0006464) with OBO_REL:is_a * Copied ubiquitin cycle (GO:0006512) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid alkylation (GO:0008213) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid alkylation (GO:0008213) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid dealkylation (GO:0008214) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid dealkylation (GO:0008214) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid biotinylation (GO:0009305) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid biotinylation (GO:0009305) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted attachment of GPI anchor to protein (GO:0016255) from protein modification (GO:0006464) with OBO_REL:is_a * Copied attachment of GPI anchor to protein (GO:0016255) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein processing (GO:0016485) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein processing (GO:0016485) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted histone modification (GO:0016570) from protein modification (GO:0006464) with OBO_REL:is_a * Copied histone modification (GO:0016570) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein arginylation (GO:0016598) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein arginylation (GO:0016598) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein desumoylation (GO:0016926) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein desumoylation (GO:0016926) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein-tetrapyrrole linkage (GO:0017006) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein-tetrapyrrole linkage (GO:0017006) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid flavinylation (GO:0017013) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid flavinylation (GO:0017013) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid nitrosylation (GO:0017014) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid nitrosylation (GO:0017014) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein-cofactor linkage (GO:0018065) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein-cofactor linkage (GO:0018065) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid halogenation (GO:0018079) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid halogenation (GO:0018079) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein polyglycylation (GO:0018094) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein polyglycylation (GO:0018094) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid hydroxylation (GO:0018126) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid hydroxylation (GO:0018126) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted nucleic acid-protein covalent cross-linking (GO:0018143) from protein modification (GO:0006464) with OBO_REL:is_a * Copied nucleic acid-protein covalent cross-linking (GO:0018143) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted peptide cross-linking (GO:0018149) from protein modification (GO:0006464) with OBO_REL:is_a * Copied peptide cross-linking (GO:0018149) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid oxidation (GO:0018158) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid oxidation (GO:0018158) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid nucleotidylation (GO:0018175) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid nucleotidylation (GO:0018175) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 88c7e9 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1fca0a1 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 95d728 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1608885 * Deleted protein amino acid desulfurization (GO:0018180) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid desulfurization (GO:0018180) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid polyamination (GO:0018184) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid polyamination (GO:0018184) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid carboxylation (GO:0018214) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid carboxylation (GO:0018214) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid phosphopantetheinylation (GO:0018215) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid phosphopantetheinylation (GO:0018215) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * added secondary id GO:0018239 to GO:0018238 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at a30ef0 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 129d2ca * Deleted peptidyl-lysine carboxyethylation (GO:0018238) from GO:0018239 with OBO_REL:is_a * org.geneontology.oboedit.datamodel.history.DestroyObjectHistoryItem at ce0af1 * Deleted protein amino acid dehydration (GO:0018249) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid dehydration (GO:0018249) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted metal incorporation into metallo-sulfur cluster (GO:0018282) from protein modification (GO:0006464) with OBO_REL:is_a * Copied metal incorporation into metallo-sulfur cluster (GO:0018282) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein-chromophore linkage (GO:0018298) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein-chromophore linkage (GO:0018298) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted enzyme active site formation (GO:0018307) from protein modification (GO:0006464) with OBO_REL:is_a * Copied enzyme active site formation (GO:0018307) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid tyrosinylation (GO:0018322) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid tyrosinylation (GO:0018322) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid succinylation (GO:0018335) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid succinylation (GO:0018335) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid esterification (GO:0018350) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid esterification (GO:0018350) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted peptide or protein carboxyl-terminal blocking (GO:0018410) from protein modification (GO:0006464) with OBO_REL:is_a * Copied peptide or protein carboxyl-terminal blocking (GO:0018410) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid glucuronidation (GO:0018411) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid glucuronidation (GO:0018411) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Changed name of GO:0019708 from "peptidyl-glycine cholesteryl ester biosynthetic process from peptidyl-glycine" to "peptidyl-glycine cholesteryl ester biosynthesis from peptidyl-glycine" * Changed definition from "The modification of the aminoacyl group of a charged tRNA." to "The covalent alteration of an amino acid charged on a tRNA before it is incorporated into a protein, as in N-formylmethionine, selenocysteine or pyrrolysine." * org.geneontology.oboedit.datamodel.history.DelDbxrefHistoryItem at 1309126 * Added definition dbxref RESID:jsg to GO:0019988 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1897f6e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at d3580 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1337f25 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1e07065 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1f33565 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 36ba7c * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 10d595e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1664274 * Copied charged-tRNA modification (GO:0019988) (as OBO_REL:is_a), to protein modification (GO:0006464) * Deleted actin modification (GO:0030047) from protein modification (GO:0006464) with OBO_REL:is_a * Copied actin modification (GO:0030047) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Changed definition from "The incorporation of a lysine methylamine methyltransferase cofactor adduct into a peptide; uses a special tRNA that recognizes the UGA codon as a modified lysine, rather than as a termination codon. The lysine methylamine methyltransferase cofactor adduct is synthesized from a lysine charged tRNA before its incorporation; it is not a posttranslational modification of peptidyl-lysine; this modification is found in several Methanosarcina methylamine methyltransferases." to "The incorporation of a lysine methylamine methyltransferase cofactor adduct into a peptide; uses a special tRNA that recognizes the UAG codon as a modified lysine, rather than as a termination codon. The lysine methylamine methyltransferase cofactor adduct is synthesized from a lysine charged tRNA before its incorporation; it is not a posttranslational modification of peptidyl-lysine; this modification is found in several Methanosarcina methylamine methyltransferases." * Deleted metal incorporation into metallo-oxygen cluster (GO:0030923) from protein modification (GO:0006464) with OBO_REL:is_a * Copied metal incorporation into metallo-oxygen cluster (GO:0030923) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted sulfur incorporation into metallo-sulfur cluster (GO:0031162) from protein modification (GO:0006464) with OBO_REL:is_a * Copied sulfur incorporation into metallo-sulfur cluster (GO:0031162) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted ISG15-protein conjugation (GO:0032020) from protein modification (GO:0006464) with OBO_REL:is_a * Copied ISG15-protein conjugation (GO:0032020) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein modification by small protein conjugation (GO:0032446) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein modification by small protein conjugation (GO:0032446) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted metal incorporation into metallo-molybdopterin complex (GO:0042040) from protein modification (GO:0006464) with OBO_REL:is_a * Copied metal incorporation into metallo-molybdopterin complex (GO:0042040) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid carbamoylation (GO:0046944) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid carbamoylation (GO:0046944) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein delipidation (GO:0051697) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein delipidation (GO:0051697) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Deleted protein amino acid de-ADP-ribosylation (GO:0051725) from protein modification (GO:0006464) with OBO_REL:is_a * Copied protein amino acid de-ADP-ribosylation (GO:0051725) (as OBO_REL:is_a), to post-translational protein modification (GO:0043687) * Changed name of GO:0052371 from "modulation by organism of entry into other organism during symbiotic interaction" to "regulation by organism of entry into other organism during symbiotic interaction" * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 94d8a5 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1b7054 * Copied regulation by organism of entry into other organism during symbiotic interaction (GO:0052371) (as OBO_REL:is_a), to regulation of biological process (GO:0050789) From gocvs at genome.Stanford.EDU Tue Feb 6 21:30:58 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Tue, 6 Feb 2007 21:30:58 -0800 (PST) Subject: GO update 02/06/2007 Message-ID: <200702070530.VAA05008@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.138 by 5.143 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Created new object GO:0010332 (macro) * Created object GO:0010332 of type obo:TERM. * Changed name of GO:0010332 from "" to "response to gamma radiation" * Added definition "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterised as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum." * Added definition dbxref :http://en.wikipedia.org/wiki/Gamma_ray to GO:0010332 * Added definition dbxref GOC:TAIR_curator to GO:0010332 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 12545be * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 5f6fa * Copied response to gamma radiation (GO:0010332) (as OBO_REL:is_a), to response to radiation (GO:0009314) * Changed namespace of GO:0010332 from "null" to "biological_process" * Created new object GO:0010333 (macro) * Created object GO:0010333 of type obo:TERM. * Changed name of GO:0010333 from "" to "terpene synthase activity" * Added definition "Catalyzing the formation of cyclic terpenes through the cyclization of linear terpenes containing varying quantities of isoprene units (i.e. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP)." * Added definition dbxref EC:4.2.3. to GO:0010333 * Added definition dbxref GOC:TAIR_curator to GO:0010333 * Copied terpene synthase activity (GO:0010333) (as OBO_REL:is_a), to carbon-oxygen lyase activity, acting on phosphates (GO:0016838) * Changed namespace of GO:0010333 from "null" to "molecular_function" * Created new object GO:0010334 (macro) * Created object GO:0010334 of type obo:TERM. * Changed name of GO:0010334 from "" to "sesquiterpene synthase activity" * Added definition "Catalyzing the formation of sesquiterpenes (terpene containing 15 carbons = three isoprene units) through the cyclization of trans,trans-farnesyl diphosphate (an allylic prenyl diphosphate intermediates of the terpene biosynthesis pathway)." * Added definition dbxref EC:4.2.3 to GO:0010334 * Added definition dbxref GOC:TAIR_curator to GO:0010334 * Copied sesquiterpene synthase activity (GO:0010334) (as OBO_REL:is_a), to terpene synthase activity (GO:0010333) * Changed namespace of GO:0010334 from "null" to "molecular_function" * Created new object GO:0010335 (macro) * Created object GO:0010335 of type obo:TERM. * Changed name of GO:0010335 from "" to "response to non-ionic osmotic stress" * Added definition "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of non-ionic solutes (e.g. mannitol, sorbitol) in the environment." * Added definition dbxref GOC:TAIR_curator to GO:0010335 * Copied response to non-ionic osmotic stress (GO:0010335) (as OBO_REL:is_a), to response to osmotic stress (GO:0006970) * Changed namespace of GO:0010335 from "null" to "biological_process" * Created new object GO:0010336 (macro) * Created object GO:0010336 of type obo:TERM. * Changed name of GO:0010336 from "" to "gibberellic acid homeostasis" * Added definition "Maintenance of endogenous concentration of primary gibberellic acid equilibrium, or constant level of gibberellic acid in a biological system by a number of biochemical processes including transport, biosynthesis, catabolism and conjugation." * Added definition dbxref PMID:17194763 to GO:0010336 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 199bb00 * Copied gibberellic acid homeostasis (GO:0010336) (as OBO_REL:is_a), to gibberellic acid metabolic process (GO:0009685) * Changed namespace of GO:0010336 from "null" to "biological_process" * Created new object GO:0010337 (macro) * Created object GO:0010337 of type obo:TERM. * Changed name of GO:0010337 from "" to "regulation of salicylic acid metabolic process" * Added definition "Any process that modulates the frequency, rate or extent of the chemical reactions involving salicylic acid." * Added definition dbxref PMID:14765119 to GO:0010337 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c41670 * Copied regulation of salicylic acid metabolic process (GO:0010337) (as OBO_REL:is_a), to regulation of hormone metabolic process (GO:0032350) * Copied regulation of salicylic acid metabolic process (GO:0010337) (as part_of), to salicylic acid metabolic process (GO:0009696) * Changed namespace of GO:0010337 from "null" to "biological_process" * Created new object GO:0010338 (macro) * Created object GO:0010338 of type obo:TERM. * Changed name of GO:0010338 from "" to "leaf formation" * Added definition "The process that gives rise to a leaf. This process pertains to the initial formation of a structure from unspecified parts." * Added definition dbxref GOC:TAIR_curator to GO:0010338 * Copied leaf formation (GO:0010338) (as part_of), to leaf morphogenesis (GO:0009965) * Copied leaf formation (GO:0010338) (as OBO_REL:is_a), to organ formation (GO:0048645) * Changed namespace of GO:0010338 from "null" to "biological_process" * Created new object GO:0032917 (macro) * Created object GO:0032917 of type obo:TERM. * Changed name of GO:0032917 from "" to "polyamine acetylation" * Added definition "The modification of polyamines by addition of acetyl groups." * Added definition dbxref GOC:mlg to GO:0032917 * Copied polyamine acetylation (GO:0032917) (as OBO_REL:is_a), to polyamine metabolic process (GO:0006595) * Changed namespace of GO:0032917 from "null" to "biological_process" * Created new object GO:0032918 (macro) * Created object GO:0032918 of type obo:TERM. * Changed name of GO:0032918 from "" to "spermidine acetylation" * Added definition "The modification of spermidine by addition of acetyl groups." * Added definition dbxref GOC:mlg to GO:0032918 * Copied spermidine acetylation (GO:0032918) (as OBO_REL:is_a), to polyamine acetylation (GO:0032917) * Copied spermidine acetylation (GO:0032918) (as OBO_REL:is_a), to spermidine metabolic process (GO:0008216) * Changed namespace of GO:0032918 from "null" to "biological_process" * Created new object GO:0032919 (macro) * Created object GO:0032919 of type obo:TERM. * Changed name of GO:0032919 from "" to "spermine acetylation" * Added definition "The modification of spermine by addition of acetyl groups." * Added definition dbxref GOC:mlg to GO:0032919 * Copied spermine acetylation (GO:0032919) (as OBO_REL:is_a), to polyamine acetylation (GO:0032917) * Copied spermine acetylation (GO:0032919) (as OBO_REL:is_a), to spermine metabolic process (GO:0008215) * Changed namespace of GO:0032919 from "null" to "biological_process" * Created new object GO:0032920 (macro) * Created object GO:0032920 of type obo:TERM. * Changed name of GO:0032920 from "" to "putrescine acetylation" * Added definition "The modification of putrescine by addition of acetyl groups." * Added definition dbxref GOC:mlg to GO:0032920 * Copied putrescine acetylation (GO:0032920) (as OBO_REL:is_a), to polyamine acetylation (GO:0032917) * Copied putrescine acetylation (GO:0032920) (as OBO_REL:is_a), to putrescine metabolic process (GO:0009445) * Changed namespace of GO:0032920 from "null" to "biological_process" * Created new object GO:0032921 (macro) * Created object GO:0032921 of type obo:TERM. * Changed name of GO:0032921 from "" to "sarcosine oxidase complex" * Added definition "A complex consisting of 4 protein subunits as a heterotetramer, that possesses sarcosine oxidase activity." * Added definition dbxref GOC:mah to GO:0032921 * Added definition dbxref GOC:mlg to GO:0032921 * Copied sarcosine oxidase complex (GO:0032921) (as OBO_REL:is_a), to cytoplasmic part (GO:0044444) * Copied sarcosine oxidase complex (GO:0032921) (as OBO_REL:is_a), to protein complex (GO:0043234) * Changed namespace of GO:0032921 from "null" to "cellular_component" * Changed comment from "This term was made obsolete because it represents a biological process and a molecular function. To update annotations, consider the molecular function term 'protein binding ; GO:0005515' and its children, and the biological process terms 'protein ubiquitination during ubiquitin-dependent protein catabolism ; GO:0042787' and 'modification-dependent protein catabolism ; GO:0019941' and its children." to "This term was made obsolete because it represents a biological process and a molecular function. To update annotations, consider the molecular function term 'protein binding ; GO:0005515' and its children, and the biological process terms 'protein ubiquitination during ubiquitin-dependent protein catabolic process ; GO:0042787' and 'modification-dependent protein catabolic process ; GO:0019941' and its children." * Changed comment from "This term was made obsolete because it represents a gene product. To update annotations, use the molecular function term 'hydrogen-transporting ATPase activity, rotational mechanism ; GO:0046961'." to "This term was made obsolete because it represents a gene product. To update annotations, use the molecular function term 'hydrogen ion transporting ATPase activity, rotational mechanism ; GO:0046961'." * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 9d463b * Changed comment from "This term was made obsolete because more appropriate terms were created. To update annotations, consider the biological process terms 'entry into host ; GO:0044409' and 'growth within host ; GO:0044412'." to "This term was made obsolete because more appropriate terms were created. To update annotations, consider the biological process terms 'entry into host ; GO:0044409' and 'growth or development within host ; GO:0044412'." * added secondary id GO:0055027 to GO:0001410 * Changed definition from "Development of chlamydospores, which are thick-walled, spore-like cells borne on the ends of elongated cells attached to hyphae or pseudohyphae, seen in the species Candida albicans and Candida dubliniensis. Note that although these structures resemble the chlamydospores of other fungi, it is not known whether they are true spores, so this process is not currently considered an instance of spore formation. As in, but not restricted to, the taxon Candida albicans (Candida albicans, ncbi_taxonomy_id:5476)." to "The process whose specific outcome is the progression of the chlamydospore over time, from its formation to the mature structure. Chlamydospores are thick-walled, spore-like cells borne on the ends of elongated cells attached to hyphae or pseudohyphae, seen in the species Candida albicans and Candida dubliniensis. Note that although these structures resemble the chlamydospores of other fungi, it is not known whether they are true spores, so this process is not currently considered an instance of spore formation. As in, but not restricted to, the taxon Candida albicans (Candida albicans, ncbi_taxonomy_id:5476)." * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 16dfc04 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1bc7ed5 * Changed comment from "This term was made obsolete because it is an amalgamation of its two children. To update annotations, consider the biological process terms 'sequestering of neurotransmitter ; GO:0042137', 'neurotransmitter biosynthesis ; GO:0042136'." to "This term was made obsolete because it is an amalgamation of its two children. To update annotations, consider the biological process terms 'sequestering of neurotransmitter ; GO:0042137', 'neurotransmitter biosynthetic process ; GO:0042136'." * Changed comment from "This term was made obsolete because it represents a group of molecular functions. To update annotations, consider the molecular function term 'proteoglycan sulfotransferase activity ; GO:0050698' and the biological process terms 'proteoglycan metabolism ; GO:0006029' and 'sulfur metabolism ; GO:0006790'." to "This term was made obsolete because it represents a group of molecular functions. To update annotations, consider the molecular function term 'proteoglycan sulfotransferase activity ; GO:0050698' and the biological process terms 'proteoglycan metabolic process ; GO:0006029' and 'sulfur metabolic process ; GO:0006790'." * Changed comment from "This term was made obsolete because it is redundant with other terms; obsoleted as part of the metabolism rearrangements. To update annotations, use the biological process terms 'cell growth ; GO:0016049' and 'metabolism ; GO:0008152'." to "This term was made obsolete because it is redundant with other terms; obsoleted as part of the metabolism rearrangements. To update annotations, use th