From gocvs at genome.Stanford.EDU Thu Jan 4 21:30:53 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Thu, 4 Jan 2007 21:30:53 -0800 (PST) Subject: GO update 01/04/2007 Message-ID: <200701050530.VAA11895@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.75 by 5.77 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * org.geneontology.oboedit.datamodel.history.DestroyObjectHistoryItem at 7f62ac * org.geneontology.oboedit.datamodel.history.DestroyObjectHistoryItem at 1273cb9 * Changed definition from "A response to protect an organism from a directly detected or perceived external threat from a nematode or nematodes to that organism." to "A response to protect an organism from a directly detected or perceived external threat from a nematode or nematodes, which results in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack." * org.geneontology.oboedit.datamodel.history.DestroyObjectHistoryItem at 103a295 * org.geneontology.oboedit.datamodel.history.DestroyObjectHistoryItem at 1a714ee * Deleted defense response to oomycetes (GO:0002229) from GO:0002217 with OBO_REL:is_a * Copied defense response to oomycetes (GO:0002229) (as OBO_REL:is_a), to defense response (GO:0006952) * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 4f4a6c * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 19efdbd * Deleted inflammatory response (GO:0006954) from GO:0002217 with OBO_REL:is_a * Copied inflammatory response (GO:0006954) (as OBO_REL:is_a), to defense response (GO:0006952) * Deleted cellular defense response (GO:0006968) from GO:0002217 with OBO_REL:is_a * Copied cellular defense response (GO:0006968) (as OBO_REL:is_a), to defense response (GO:0006952) * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 124b249 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 34e8a5 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 195c88b * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at a11f83 * Copied formation of organ boundary (GO:0010160) (as OBO_REL:is_a), to pattern specification process (GO:0007389) * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1c01fe * Deleted organ boundary specification between lateral organs and the meristem (GO:0010199) from GO:0048862 with OBO_REL:is_a * Added general dbxref PMID:12626695 to synonym cerebral cortex lamination of GO:0021819 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at c6dd37 * Deleted defense response to bacterium (GO:0042742) from GO:0002217 with OBO_REL:is_a * Copied defense response to bacterium (GO:0042742) (as OBO_REL:is_a), to defense response (GO:0006952) * Deleted defense response to protozoan (GO:0042832) from GO:0002217 with OBO_REL:is_a * Copied defense response to protozoan (GO:0042832) (as OBO_REL:is_a), to defense response (GO:0006952) * Deleted innate immune response (GO:0045087) from GO:0002217 with OBO_REL:is_a * Copied innate immune response (GO:0045087) (as OBO_REL:is_a), to defense response (GO:0006952) * org.geneontology.oboedit.datamodel.history.DestroyObjectHistoryItem at 1e55bd1 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at ef2a9a * Deleted defense response to fungus (GO:0050832) from GO:0002217 with OBO_REL:is_a * Copied defense response to fungus (GO:0050832) (as OBO_REL:is_a), to defense response (GO:0006952) * Deleted defense response to virus (GO:0051607) from GO:0002217 with OBO_REL:is_a * Copied defense response to virus (GO:0051607) (as OBO_REL:is_a), to defense response (GO:0006952) * Changed definition from "MERGED DEFINITION: TARGET DEFINITION: The processes by which an organism has an effect on another organism of the same or different species. -------------------- SOURCE DEFINITION: The processes by which an organism has an observable physiological effect on another organism of the same or different species." to "The processes by which an organism has an effect on another organism of the same or different species." * Deleted evasion of defense response of other organism during symbiotic interaction (GO:0051807) from GO:0002217 with OBO_REL:is_a * Copied evasion of defense response of other organism during symbiotic interaction (GO:0051807) (as OBO_REL:is_a), to defense response (GO:0006952) From gocvs at genome.Stanford.EDU Fri Jan 5 21:30:54 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Fri, 5 Jan 2007 21:30:54 -0800 (PST) Subject: GO update 01/05/2007 Message-ID: <200701060530.VAA05005@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.77 by 5.82 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Created new object GO:0032784 (macro) * Created object GO:0032784 of type obo:TERM. * Changed name of GO:0032784 from "" to "regulation of RNA elongation" * Added definition "Any process that modulates the frequency, rate or extent of RNA elongation, the extension of an RNA molecule after transcription initiation by the addition of ribonucleotides catalyzed by an RNA polymerase." * Added definition dbxref GOC:mah to GO:0032784 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 430b07 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1890c30 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 7f62ac * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1273cb9 * Copied regulation of RNA elongation (GO:0032784) (as part_of), to RNA elongation (GO:0006354) * Copied regulation of RNA elongation (GO:0032784) (as OBO_REL:is_a), to regulation of RNA metabolic process (GO:0051252) * Changed namespace of GO:0032784 from "null" to "biological_process" * Created new object GO:0032785 (macro) * Created object GO:0032785 of type obo:TERM. * Changed name of GO:0032785 from "" to "negative regulation of RNA elongation" * Added definition "Any process that stops, prevents or reduces the frequency, rate or extent of RNA elongation, the extension of an RNA molecule after transcription initiation by the addition of ribonucleotides catalyzed by an RNA polymerase." * Added definition dbxref GOC:mah to GO:0032785 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 103a295 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1a714ee * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 4f4a6c * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 19efdbd * Copied negative regulation of RNA elongation (GO:0032785) (as OBO_REL:is_a), to negative regulation of RNA metabolic process (GO:0051253) * Copied negative regulation of RNA elongation (GO:0032785) (as OBO_REL:is_a), to regulation of RNA elongation (GO:0032784) * Changed namespace of GO:0032785 from "null" to "biological_process" * Created new object GO:0032786 (macro) * Created object GO:0032786 of type obo:TERM. * Changed name of GO:0032786 from "" to "positive regulation of RNA elongation" * Added definition "Any process that activates or increases the frequency, rate or extent of RNA elongation, the extension of an RNA molecule after transcription initiation by the addition of ribonucleotides catalyzed by an RNA polymerase." * Added definition dbxref GOC:mah to GO:0032786 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 124b249 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 34e8a5 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 195c88b * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at a11f83 * Copied positive regulation of RNA elongation (GO:0032786) (as OBO_REL:is_a), to positive regulation of RNA metabolic process (GO:0051254) * Copied positive regulation of RNA elongation (GO:0032786) (as OBO_REL:is_a), to regulation of RNA elongation (GO:0032784) * Changed namespace of GO:0032786 from "null" to "biological_process" * Created new object GO:0032787 (macro) * Created object GO:0032787 of type obo:TERM. * Changed name of GO:0032787 from "" to "monocarboxylic acid metabolic process" * Added definition "The chemical reactions and pathways involving monocarboxylic acids, any organic acid containing one carboxyl (COOH) group or anion (COO-)." * Added definition dbxref GOC:vk to GO:0032787 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c01fe * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at c6dd37 * Copied monocarboxylic acid metabolic process (GO:0032787) (as OBO_REL:is_a), to carboxylic acid metabolic process (GO:0019752) * Changed namespace of GO:0032787 from "null" to "biological_process" * Created new object GO:0032788 (macro) * Created object GO:0032788 of type obo:TERM. * Changed name of GO:0032788 from "" to "saturated monocarboxylic acid metabolic process" * Added definition "The chemical reactions and pathways involving saturated monocarboxylic acids, any organic acid containing one carboxyl (COOH) group or anion (COO-) and fully saturated C-C bonds." * Added definition dbxref GOC:mah to GO:0032788 * Added definition dbxref GOC:vk to GO:0032788 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1e55bd1 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at ef2a9a * Copied saturated monocarboxylic acid metabolic process (GO:0032788) (as OBO_REL:is_a), to carboxylic acid metabolic process (GO:0019752) * Copied saturated monocarboxylic acid metabolic process (GO:0032788) (as OBO_REL:is_a), to monocarboxylic acid metabolic process (GO:0032787) * Changed namespace of GO:0032788 from "null" to "biological_process" * Created new object GO:0032789 (macro) * Created object GO:0032789 of type obo:TERM. * Changed name of GO:0032789 from "" to "unsaturated monocarboxylic acid metabolic process" * Added definition "The chemical reactions and pathways involving unsaturated monocarboxylic acids, any organic acid containing one carboxyl (COOH) group or anion (COO-) and one or more unsaturated C-C bonds." * Added definition dbxref GOC:mah to GO:0032789 * Added definition dbxref GOC:vk to GO:0032789 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1d5ff9c * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 807c88 * Copied unsaturated monocarboxylic acid metabolic process (GO:0032789) (as OBO_REL:is_a), to carboxylic acid metabolic process (GO:0019752) * Copied unsaturated monocarboxylic acid metabolic process (GO:0032789) (as OBO_REL:is_a), to monocarboxylic acid metabolic process (GO:0032787) * Changed namespace of GO:0032789 from "null" to "biological_process" * Changed name of GO:0000220 from "hydrogen-transporting ATPase V0 domain" to "hydrogen ion transporting ATPase V0 domain" * Changed name of GO:0000221 from "hydrogen-transporting ATPase V1 domain" to "hydrogen ion transporting ATPase V1 domain" * Changed name of GO:0000222 from "plasma membrane hydrogen-transporting ATPase V0 domain" to "plasma membrane hydrogen ion transporting ATPase V0 domain" * Changed name of GO:0000223 from "plasma membrane hydrogen-transporting ATPase V1 domain" to "plasma membrane hydrogen ion transporting ATPase V1 domain" * Deleted neural plate development (GO:0001840) from nervous system development (GO:0007399) with OBO_REL:is_a * Copied immune response-regulating cell surface receptor signaling pathway (GO:0002768) (as OBO_REL:is_a), to cell surface receptor linked signal transduction (GO:0007166) * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 16fe9e7 * Changed definition from "A distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of higher eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: keratin filaments of mammalian epithelial cells; desmin filaments found in cells of muscles of all types; vimentin filaments found in mesenchymal cells; neurofilaments of neurons; and glial filaments found in all types of glial cells." to "A distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: keratin filaments of mammalian epithelial cells; desmin filaments found in cells of muscles of all types; vimentin filaments found in mesenchymal cells; neurofilaments of neurons; and glial filaments found in all types of glial cells." * Deleted uronic acid metabolic process (GO:0006063) from carboxylic acid metabolic process (GO:0019752) with OBO_REL:is_a * Copied uronic acid metabolic process (GO:0006063) (as OBO_REL:is_a), to monocarboxylic acid metabolic process (GO:0032787) * Deleted acetate metabolic process (GO:0006083) from carboxylic acid metabolic process (GO:0019752) with OBO_REL:is_a * Copied acetate metabolic process (GO:0006083) (as OBO_REL:is_a), to monocarboxylic acid metabolic process (GO:0032787) * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 6573cc * Deleted fatty acid metabolic process (GO:0006631) from carboxylic acid metabolic process (GO:0019752) with OBO_REL:is_a * Copied fatty acid metabolic process (GO:0006631) (as OBO_REL:is_a), to monocarboxylic acid metabolic process (GO:0032787) * Deleted biotin metabolic process (GO:0006768) from carboxylic acid metabolic process (GO:0019752) with OBO_REL:is_a * Copied biotin metabolic process (GO:0006768) (as OBO_REL:is_a), to monocarboxylic acid metabolic process (GO:0032787) * Deleted bile acid metabolic process (GO:0008206) from carboxylic acid metabolic process (GO:0019752) with OBO_REL:is_a * Copied bile acid metabolic process (GO:0008206) (as OBO_REL:is_a), to monocarboxylic acid metabolic process (GO:0032787) * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 955648 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 539351 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at ece059 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 17d176f * Deleted gibberellic acid metabolic process (GO:0009685) from carboxylic acid metabolic process (GO:0019752) with OBO_REL:is_a * Copied gibberellic acid metabolic process (GO:0009685) (as OBO_REL:is_a), to monocarboxylic acid metabolic process (GO:0032787) * Deleted abscisic acid metabolic process (GO:0009687) from carboxylic acid metabolic process (GO:0019752) with OBO_REL:is_a * Copied abscisic acid metabolic process (GO:0009687) (as OBO_REL:is_a), to monocarboxylic acid metabolic process (GO:0032787) * Deleted cinnamic acid metabolic process (GO:0009803) from carboxylic acid metabolic process (GO:0019752) with OBO_REL:is_a * Copied cinnamic acid metabolic process (GO:0009803) (as OBO_REL:is_a), to monocarboxylic acid metabolic process (GO:0032787) * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 18dae84 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at bc6623 * Deleted formate metabolic process (GO:0015942) from carboxylic acid metabolic process (GO:0019752) with OBO_REL:is_a * Copied formate metabolic process (GO:0015942) (as OBO_REL:is_a), to monocarboxylic acid metabolic process (GO:0032787) * Deleted benzoate metabolic process (GO:0018874) from carboxylic acid metabolic process (GO:0019752) with OBO_REL:is_a * Copied benzoate metabolic process (GO:0018874) (as OBO_REL:is_a), to monocarboxylic acid metabolic process (GO:0032787) * Deleted 3-phenylpropionate metabolic process (GO:0018962) from carboxylic acid metabolic process (GO:0019752) with OBO_REL:is_a * Copied 3-phenylpropionate metabolic process (GO:0018962) (as OBO_REL:is_a), to monocarboxylic acid metabolic process (GO:0032787) * Deleted aldonic acid metabolic process (GO:0019520) from carboxylic acid metabolic process (GO:0019752) with OBO_REL:is_a * Copied aldonic acid metabolic process (GO:0019520) (as OBO_REL:is_a), to monocarboxylic acid metabolic process (GO:0032787) * Deleted propionate metabolic process (GO:0019541) from carboxylic acid metabolic process (GO:0019752) with OBO_REL:is_a * Copied propionate metabolic process (GO:0019541) (as OBO_REL:is_a), to monocarboxylic acid metabolic process (GO:0032787) * Added general dbxref PMID:12626695 to synonym cerebral cortex lamination of GO:0021819 * Deleted neural plate formation (GO:0021990) from anatomical structure formation (GO:0048646) with OBO_REL:is_a * Changed definition from "A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 12 subunits, including the catalytic subunit Esa1 (homologous to human Tip60)." to "A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60)." * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at d5a1f5 * Deleted dethiobiotin metabolic process (GO:0046450) from carboxylic acid metabolic process (GO:0019752) with OBO_REL:is_a * Copied dethiobiotin metabolic process (GO:0046450) (as OBO_REL:is_a), to monocarboxylic acid metabolic process (GO:0032787) * Changed name of GO:0046610 from "lysosomal hydrogen-transporting ATPase V0 domain" to "lysosomal hydrogen ion transporting ATPase V0 domain" * Changed name of GO:0046612 from "lysosomal hydrogen-transporting ATPase V1 domain" to "lysosomal hydrogen ion transporting ATPase V1 domain" * Changed name of GO:0046933 from "hydrogen-transporting ATP synthase activity, rotational mechanism" to "hydrogen ion transporting ATP synthase activity, rotational mechanism" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 17befbe * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1b8acf0 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 161d803 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at acc95c * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1d7f4e9 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 10ff939 * Changed name of GO:0046961 from "hydrogen-transporting ATPase activity, rotational mechanism" to "hydrogen ion transporting ATPase activity, rotational mechanism" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1b33ffe * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 12e5422 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 95aed8 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 109ea48 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1f4447b * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1bc0b1e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 7df2f3 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at d94550 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 55a144 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1cea3a4 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1596c17 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c77e99 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 488f85 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c686c2 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at b93ffb * org.geneontology.oboedit.datamodel.history.DelDbxrefHistoryItem at 178ca0 * org.geneontology.oboedit.datamodel.history.DelDbxrefHistoryItem at 1169c2 * org.geneontology.oboedit.datamodel.history.DelDbxrefHistoryItem at 1363f96 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 88cdff From gocvs at genome.Stanford.EDU Tue Jan 9 21:30:53 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Tue, 9 Jan 2007 21:30:53 -0800 (PST) Subject: GO update 01/09/2007 Message-ID: <200701100530.VAA00262@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.82 by 5.85 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Created new object GO:0002095 (macro) * Created object GO:0002095 of type obo:TERM. * Changed name of GO:0002095 from "" to "caveolar macromolecular signaling complex" * Added definition "A complex composed of proteins required for beta adrenergic receptor activation of protein kinase A. It includes the Cav 12. subunit of L-type calcium channel, protein kinase A regulatory subunit 2(PKAR2), adenyl cyclase, beta-adrenergic receptor, G-alpha-S, protein phasphatase 2A (PP2A) and caveolin 3 (CAV3)." * Added definition dbxref PMID:16648270 to GO:0002095 * Copied caveolar macromolecular signaling complex (GO:0002095) (as OBO_REL:is_a), to protein complex (GO:0043234) * Copied caveolar macromolecular signaling complex (GO:0002095) (as part_of), to caveola (GO:0005901) * Changed namespace of GO:0002095 from "null" to "cellular_component" * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 103a295 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1a714ee * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 4f4a6c * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 19efdbd * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 124b249 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 34e8a5 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 195c88b * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at a11f83 * Added general dbxref PMID:12626695 to synonym cerebral cortex lamination of GO:0021819 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1c01fe * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at c6dd37 From gocvs at genome.Stanford.EDU Thu Jan 11 21:30:53 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Thu, 11 Jan 2007 21:30:53 -0800 (PST) Subject: GO update 01/11/2007 Message-ID: <200701120530.VAA05513@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.85 by 5.87 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Copied template for synthesis of G-rich strand of telomere DNA activity (GO:0000332) (as OBO_REL:is_a), to molecular_function (GO:0003674) * Deleted alternative nuclear mRNA splicing, via spliceosome (GO:0000380) from nuclear mRNA splicing, via spliceosome (GO:0000398) with part_of * Deleted ovulation (sensu the Mammalia research community) (GO:0001542) from female gonad development (GO:0008585) with OBO_REL:is_a * Changed definition from "A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes migratory." to "A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell." * Deleted epithelial to mesenchymal transition (GO:0001837) from mesenchymal cell development (GO:0014031) with part_of * Deleted neural plate development (GO:0001840) from anatomical structure formation (GO:0048646) with OBO_REL:is_a * org.geneontology.oboedit.datamodel.history.DelDbxrefHistoryItem at 19efdbd * Added definition dbxref Textbook of Medical Physiology (ISBN:0721643949) to GO:0001976 * Deleted arrestin mediated desensitization of G-protein coupled receptor protein signaling pathway (GO:0002032) from desensitization of G-protein coupled receptor protein signaling pathway (GO:0002029) with part_of * Copied response to molecule of oomycetes origin (GO:0002240) (as OBO_REL:is_a), to response to biotic stimulus (GO:0009607) * Changed definition from "The cellular process by which a a physical entity or change in state, a signal, is created that originates in one cell and is used to transfer information to another cell. This process begins with the initial formation of the signal and ends with the mature form and placement of the signal." to "The cellular process by which a physical entity or change in state, a signal, is created that originates in one cell and is used to transfer information to another cell. This process begins with the initial formation of the signal and ends with the mature form and placement of the signal." * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 124b249 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 34e8a5 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 195c88b * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at a11f83 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1c01fe * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at c6dd37 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1e55bd1 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at ef2a9a * Copied vegetative to reproductive phase transition (GO:0010228) (as OBO_REL:is_a), to developmental process (GO:0032502) * Changed definition from "Modulates the enzyme activity of acetylglutamate kinase" to "Modulates the enzyme activity of acetylglutamate kinase." * Copied pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex (GO:0010317) (as OBO_REL:is_a), to protein complex (GO:0043234) * Copied pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex (GO:0010318) (as OBO_REL:is_a), to protein complex (GO:0043234) * Added general dbxref PMID:12626695 to synonym cerebral cortex lamination of GO:0021819 * Copied neural plate formation (GO:0021990) (as OBO_REL:is_a), to anatomical structure formation (GO:0048646) * Deleted protein maturation via protein folding (GO:0022417) from protein maturation (GO:0051604) with part_of * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1d5ff9c * Copied regulation of macrophage activation (GO:0043030) (as OBO_REL:is_a), to regulation of cell activation (GO:0050865) * Copied spore development (sensu the Magnoliophyta research community) (GO:0048236) (as OBO_REL:is_a), to developmental process (GO:0032502) * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 807c88 * Copied regulation of lymphocyte activation (GO:0051249) (as OBO_REL:is_a), to regulation of cell activation (GO:0050865) * Copied regulation of cardiac muscle fiber development (GO:0055018) (as OBO_REL:is_a), to regulation of developmental process (GO:0050793) From gocvs at genome.Stanford.EDU Fri Jan 12 21:30:57 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Fri, 12 Jan 2007 21:30:57 -0800 (PST) Subject: GO update 01/12/2007 Message-ID: <200701130530.VAA28179@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.87 by 5.88 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Created new object GO:0032790 (macro) * Created object GO:0032790 of type obo:TERM. * Changed name of GO:0032790 from "" to "ribosome disassembly" * Added definition "The disaggregation of a ribosome into its constituent components; includes the dissociation of ribosomal subunits." * Added definition dbxref GOC:mah to GO:0032790 * Added definition dbxref GOC:vk to GO:0032790 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1bc0b1e * Copied ribosome disassembly (GO:0032790) (as OBO_REL:is_a), to cellular protein complex disassembly (GO:0043624) * Changed namespace of GO:0032790 from "null" to "biological_process" * Created new object GO:0032791 (macro) * Created object GO:0032791 of type obo:TERM. * Changed name of GO:0032791 from "" to "lead ion binding" * Added definition "Interacting selectively with lead (Pb) ions." * Added definition dbxref GOC:mah to GO:0032791 * Added GO:0032791 to category goslim_generic * Added GO:0032791 to category gosubset_prok * Copied lead ion binding (GO:0032791) (as OBO_REL:is_a), to cation binding (GO:0043169) * Copied lead ion binding (GO:0032791) (as OBO_REL:is_a), to metal ion binding (GO:0046872) * Changed namespace of GO:0032791 from "null" to "molecular_function" * Created new object GO:0032792 (macro) * Created object GO:0032792 of type obo:TERM. * Changed name of GO:0032792 from "" to "inhibition of CREB transcription factor" * Added definition "Any process that stops, prevents or reduces the frequency, rate or extent of the activity of the transcription factor CREB." * Added definition dbxref GOC:ecd to GO:0032792 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 7df2f3 * Copied inhibition of CREB transcription factor (GO:0032792) (as OBO_REL:is_a), to negative regulation of transcription factor activity (GO:0043433) * Changed namespace of GO:0032792 from "null" to "biological_process" * Created new object GO:0032793 (macro) * Created object GO:0032793 of type obo:TERM. * Changed name of GO:0032793 from "" to "activation of CREB transcription factor" * Added definition "Any process that activates or increases the frequency, rate or extent of activity of the transcription factor CREB." * Added definition dbxref GOC:ecd to GO:0032793 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at d94550 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 55a144 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1cea3a4 * Copied activation of CREB transcription factor (GO:0032793) (as OBO_REL:is_a), to positive regulation of transcription factor activity (GO:0051091) * Changed namespace of GO:0032793 from "null" to "biological_process" * Created new object GO:0032794 (macro) * Created object GO:0032794 of type obo:TERM. * Changed name of GO:0032794 from "" to "GTPase activating protein binding" * Added definition "Interacting selectively with a GTPase activating protein." * Added definition dbxref GOC:nln to GO:0032794 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1596c17 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1c77e99 * Copied GTPase activating protein binding (GO:0032794) (as OBO_REL:is_a), to protein binding (GO:0005515) * Changed namespace of GO:0032794 from "null" to "molecular_function" * Created new object GO:0032795 (macro) * Created object GO:0032795 of type obo:TERM. * Changed name of GO:0032795 from "" to "heterotrimeric G-protein binding" * Added definition "Interacting selectively with a eterotrimeric G-protein." * Added definition dbxref GOC:nln to GO:0032795 * Copied heterotrimeric G-protein binding (GO:0032795) (as OBO_REL:is_a), to protein complex binding (GO:0032403) * Changed namespace of GO:0032795 from "null" to "molecular_function" * Created new object GO:0032796 (macro) * Created object GO:0032796 of type obo:TERM. * Changed name of GO:0032796 from "" to "uropod organization and biogenesis" * Added definition "The assembly and arrangement of a uropod, a rigid membrane projection with related cytoskeletal components at the trailing edge of a lymphocyte or other cell in the process of migrating or being activated." * Added definition dbxref GOC:add to GO:0032796 * Added definition dbxref ISBN:0781735149 to GO:0032796 * Added definition dbxref PMID:12714569 to GO:0032796 * Added definition dbxref PMID:12787750 to GO:0032796 * Copied uropod organization and biogenesis (GO:0032796) (as OBO_REL:is_a), to cell projection organization and biogenesis (GO:0030030) * Changed namespace of GO:0032796 from "null" to "biological_process" * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 488f85 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1c686c2 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at b93ffb * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 178ca0 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1169c2 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1363f96 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 88cdff * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 18c25c0 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 26e61 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 19ca976 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 39a3a1 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 25a966 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 9492b2 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 2b1fe9 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 13c1dfc * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1d4a8bf * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 92a0d8 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 7df256 * Changed definition from "A complex composed of proteins required for beta adrenergic receptor activation of protein kinase A. It includes the Cav 12. subunit of L-type calcium channel, protein kinase A regulatory subunit 2(PKAR2), adenyl cyclase, beta-adrenergic receptor, G-alpha-S, protein phasphatase 2A (PP2A) and caveolin 3 (CAV3)." to "A complex composed of proteins required for beta adrenergic receptor activation of protein kinase A. It includes the Cav 12. subunit of L-type calcium channel, protein kinase A regulatory subunit 2(PKAR2), adenyl cyclase, beta-adrenergic receptor, G-alpha-S, protein phosphatase 2A (PP2A) and caveolin 3 (CAV3)." * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at b0ed61 * Deleted succinate metabolic process (GO:0006105) from carboxylic acid metabolic process (GO:0019752) with OBO_REL:is_a * Copied succinate metabolic process (GO:0006105) (as OBO_REL:is_a), to dicarboxylic acid metabolic process (GO:0043648) * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1b088f7 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at f03c14 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1f86240 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1fa6a33 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1523e5c * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 7c2f9f * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 11a8bab * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1c79159 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 117849d * Added general dbxref PMID:12626695 to synonym cerebral cortex lamination of GO:0021819 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1039a73 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 190fab1 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 13aaf95 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1dd900b From gocvs at genome.Stanford.EDU Mon Jan 15 21:30:54 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Mon, 15 Jan 2007 21:30:54 -0800 (PST) Subject: GO update 01/15/2007 Message-ID: <200701160530.VAA07500@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.88 by 5.90 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Created new object GO:0032797 (macro) * Created object GO:0032797 of type obo:TERM. * Changed name of GO:0032797 from "" to "SMN complex" * Added definition "A protein complex that contains the survival motor neuron (SMN) protein and at least eight additional integral components, including the Gemin2-8 and Unrip proteins; the complex is found in the cytoplasm and in nuclear Gems, and is involved in spliceosomal snRNP assembly in the cytoplasm and in pre-mRNA splicing in the nucleus." * Added definition dbxref PMID:16434402 to GO:0032797 * Added definition dbxref PMID:17023415 to GO:0032797 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at cf728d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 169a41e * Copied SMN complex (GO:0032797) (as OBO_REL:is_a), to intracellular part (GO:0044424) * Copied SMN complex (GO:0032797) (as OBO_REL:is_a), to protein complex (GO:0043234) * Changed namespace of GO:0032797 from "null" to "cellular_component" * Created new object GO:0032798 (macro) * Created object GO:0032798 of type obo:TERM. * Changed name of GO:0032798 from "" to "Swi5-Sfr1 complex" * Added definition "A conserved eukaryotic protein complex involved in DNA recombination repair; in Schizosaccharomyces the complex contains two Swi5 monomers and one Sfr1 monomer." * Added definition dbxref PMID:16921379 to GO:0032798 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 95cc0b * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 86f0bb * Copied Swi5-Sfr1 complex (GO:0032798) (as OBO_REL:is_a), to protein complex (GO:0043234) * Copied Swi5-Sfr1 complex (GO:0032798) (as OBO_REL:is_a), to nuclear part (GO:0044428) * Changed namespace of GO:0032798 from "null" to "cellular_component" * Created new object GO:0032799 (macro) * Created object GO:0032799 of type obo:TERM. * Changed name of GO:0032799 from "" to "low-density lipoprotein receptor metabolic process" * Added definition "The chemical reactions and pathways involving low-density lipoprotein receptors." * Added definition dbxref GOC:vk to GO:0032799 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 126c1c8 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 17c3c51 * Copied low-density lipoprotein receptor metabolic process (GO:0032799) (as OBO_REL:is_a), to receptor metabolic process (GO:0043112) * Changed namespace of GO:0032799 from "null" to "biological_process" * Created new object GO:0032800 (macro) * Created object GO:0032800 of type obo:TERM. * Changed name of GO:0032800 from "" to "receptor biosynthetic process" * Added definition "The chemical reactions and pathways resulting in the formation of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function." * Added definition dbxref GOC:mah to GO:0032800 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 15bfc0a * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at dd7 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 18ca56f * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at c12dab * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 9d509b * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 172cf3 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1882f9f * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1eea8ed * Copied receptor biosynthetic process (GO:0032800) (as OBO_REL:is_a), to receptor metabolic process (GO:0043112) * Changed namespace of GO:0032800 from "null" to "biological_process" * Created new object GO:0032801 (macro) * Created object GO:0032801 of type obo:TERM. * Changed name of GO:0032801 from "" to "receptor catabolic process" * Added definition "The chemical reactions and pathways resulting in the breakdown of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function." * Added definition dbxref GOC:mah to GO:0032801 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1948bae * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 15e60cf * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 125bad7 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at d8313 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1185da7 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at ac9a2c * Copied receptor catabolic process (GO:0032801) (as OBO_REL:is_a), to receptor metabolic process (GO:0043112) * Changed namespace of GO:0032801 from "null" to "biological_process" * Created new object GO:0032802 (macro) * Created object GO:0032802 of type obo:TERM. * Changed name of GO:0032802 from "" to "low-density lipoprotein receptor catabolic process" * Added definition "The chemical reactions and pathways resulting in the breakdown of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function." * Added definition dbxref GOC:mah to GO:0032802 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1bde91b * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1130d55 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1d05555 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 928101 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 538cd9 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1441980 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1e62b5b * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 286a7e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 167774d * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c9767e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 182555e * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1b2be48 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1ea751f * Copied low-density lipoprotein receptor catabolic process (GO:0032802) (as OBO_REL:is_a), to receptor catabolic process (GO:0032801) * Copied low-density lipoprotein receptor catabolic process (GO:0032802) (as OBO_REL:is_a), to low-density lipoprotein receptor metabolic process (GO:0032799) * Changed namespace of GO:0032802 from "null" to "biological_process" * Created new object GO:0043683 (macro) * Created object GO:0043683 of type obo:TERM. * Changed name of GO:0043683 from "" to "type IV pilus biogenesis" * Added definition "The assembly of a type IV pilus, composed of a pilus fiber and approximately ten proteins at its base; type IV pili play a role in cell motility, adherence to substrates, and aggregation." * Added definition dbxref PAMGO:ml to GO:0043683 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1af7350 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1bbbb4a * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 51b0a * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 132420c * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 8e56c2 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at e1e519 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 87d2ea * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 12822c5 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 2e65e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 625690 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 213859 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at fa6041 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c55108 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 14b02e0 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1a9cc12 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 94d15e * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 3d9eba * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 17fe856 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 6e7b63 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 166a6f5 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 5b340f * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1b6ce33 * Copied type IV pilus biogenesis (GO:0043683) (as OBO_REL:is_a), to pilus biogenesis (GO:0009297) * Changed namespace of GO:0043683 from "null" to "biological_process" * Created new object GO:0043684 (macro) * Created object GO:0043684 of type obo:TERM. * Changed name of GO:0043684 from "" to "type IV protein secretion system complex" * Added definition "A complex of proteins related to those involved in bacterial DNA conjugative transfer, that permits the transfer of nucleoprotein DNA conjugation intermediates or proteins into the extracellular milieu or directly into host cells. In general the type IV complex forms a multisubunit cell-envelope-spanning structure composed of a secretion channel and often a pilus or other surface filament or protein(s)." * Added definition dbxref PAMGO:ml to GO:0043684 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 9b878f * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at e0f2f0 * Copied type IV protein secretion system complex (GO:0043684) (as OBO_REL:is_a), to protein complex (GO:0043234) * Copied type IV protein secretion system complex (GO:0043684) (as OBO_REL:is_a), to cell part (GO:0044464) * Changed namespace of GO:0043684 from "null" to "cellular_component" * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1f460c1 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at fc5124 * Changed definition from "The assembly of a pilus, a short filamentous structure on a bacterial cell, flagella-like in structure and generally present in many copies. Is required for bacterial conjugation and plays a role in adherence to surfaces (when it is called a fimbrium), and in the formation of pellicles." to "The assembly of a pilus, a short filamentous structure on a bacterial cell, flagella-like in structure and generally present in many copies. Pili are variously involved in transfer of nucleic acids, adherence to surfaces, and formation of pellicles. Is required for bacterial conjugation and plays a role in adherence to surfaces (when it is called a fimbrium), and in the formation of pellicles." * org.geneontology.oboedit.datamodel.history.DelDbxrefHistoryItem at 1334d76 * org.geneontology.oboedit.datamodel.history.DelDbxrefHistoryItem at 12287d3 * Added definition dbxref PAMGO:mcc to GO:0009297 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 33461 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 63f864 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 148a4d4 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 3d663d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 103405a * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 760c9f * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 36d467 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1b2e269 * Deleted type II protein secretion system complex (GO:0015627) from plasma membrane part (GO:0044459) with OBO_REL:is_a * Copied type II protein secretion system complex (GO:0015627) (as OBO_REL:is_a), to cell part (GO:0044464) * Added general dbxref PMID:12626695 to synonym cerebral cortex lamination of GO:0021819 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 12e70e2 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1f5156c * Deleted type I protein secretion system complex (GO:0030256) from plasma membrane part (GO:0044459) with OBO_REL:is_a * Copied type I protein secretion system complex (GO:0030256) (as OBO_REL:is_a), to cell part (GO:0044464) * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 15176de * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1531abc * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 10042dc * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 25a937 * Deleted type III protein secretion system complex (GO:0030257) from plasma membrane part (GO:0044459) with OBO_REL:is_a * Copied type III protein secretion system complex (GO:0030257) (as OBO_REL:is_a), to cell part (GO:0044464) * Changed definition from "A transmembrane protein complex involved in the translocation of proteins across the cytoplasmic membrane. In Gram-negative bacteria, Sec-translocated proteins are subsequently secreted via the type I, II, IV, or V secretion systems. Sec complex components include SecA,D,E,F,G,Y and YajC. As in, but not restricted to, the taxon Bacteria (Bacteria, ncbi_taxonomy_id:2)." to "A transmembrane protein complex involved in the translocation of proteins across the cytoplasmic membrane. In Gram-negative bacteria, Sec-translocated proteins are subsequently secreted via the type II, IV, or V secretion systems. Sec complex components include SecA, D, E, F, G, Y and YajC. As in, but not restricted to, the taxon Bacteria (Bacteria, ncbi_taxonomy_id:2)." * Deleted Sec complex (sensu the Bacteria research community) (GO:0031522) from plasma membrane part (GO:0044459) with OBO_REL:is_a * Copied Sec complex (sensu the Bacteria research community) (GO:0031522) (as OBO_REL:is_a), to cell part (GO:0044464) * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 8878ba * Changed name of GO:0043107 from "TFP-dependent motility" to "type IV pilus-dependent motility" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1ae2297 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 160f199 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1957aab * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at a89d79 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1fa7e8e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 8aa8ee * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 158c156 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1fcf5ca * Copied neurotransmitter receptor biosynthetic process (GO:0045212) (as OBO_REL:is_a), to receptor biosynthetic process (GO:0032800) * Deleted low-density lipoprotein receptor biosynthetic process (GO:0045713) from macromolecule biosynthetic process (GO:0009059) with OBO_REL:is_a * Copied low-density lipoprotein receptor biosynthetic process (GO:0045713) (as OBO_REL:is_a), to low-density lipoprotein receptor metabolic process (GO:0032799) * Copied low-density lipoprotein receptor biosynthetic process (GO:0045713) (as OBO_REL:is_a), to receptor biosynthetic process (GO:0032800) * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 6cd722 * Changed definition from "Any process that stops, prevents or reduces the frequency, rate or extent of natural killer T cell differentiation." to "Any process that activates or increases the frequency, rate or extent of natural killer T cell differentiation." From gocvs at genome.Stanford.EDU Tue Jan 16 21:30:53 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Tue, 16 Jan 2007 21:30:53 -0800 (PST) Subject: GO update 01/16/2007 Message-ID: <200701170530.VAA26955@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.90 by 5.96 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Created new object GO:0002096 (macro) * Created object GO:0002096 of type obo:TERM. * Changed name of GO:0002096 from "" to "polkadots" * Added comment "Polkadots also contains some amount of MALT1. Interaction with MALT1 is required for formation of the polkadots." * Added definition "A punctate, filamentous structure composed of Bcl10 that appears in the cytoplasm of T-cells shortly after T-cell receptor stimulation. Polkadots stands for "Punctate Oligomeric Killing and Activating DOmains Transducing Signals"." * Added definition dbxref PMID:14724296 to GO:0002096 * Added definition dbxref PMID:16495340 to GO:0002096 * Copied polkadots (GO:0002096) (as OBO_REL:is_a), to protein complex (GO:0043234) * Copied polkadots (GO:0002096) (as OBO_REL:is_a), to cytoplasmic part (GO:0044444) * Changed namespace of GO:0002096 from "null" to "cellular_component" * Created new object GO:0032803 (macro) * Created object GO:0032803 of type obo:TERM. * Changed name of GO:0032803 from "" to "regulation of low-density lipoprotein receptor catabolic process" * Added definition "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of low-density lipoprotein receptors." * Added definition dbxref GOC:mah to GO:0032803 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1f6812e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 9b1e12 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1d35f3d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 11c4af * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 87cea2 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at f0cb9 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at c8343 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 17db632 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 44a600 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at ee64cf * Copied regulation of low-density lipoprotein receptor catabolic process (GO:0032803) (as OBO_REL:is_a), to regulation of translation (GO:0006417) * Copied regulation of low-density lipoprotein receptor catabolic process (GO:0032803) (as part_of), to low-density lipoprotein receptor catabolic process (GO:0032802) * Changed namespace of GO:0032803 from "null" to "biological_process" * Created new object GO:0032804 (macro) * Created object GO:0032804 of type obo:TERM. * Changed name of GO:0032804 from "" to "negative regulation of low-density lipoprotein receptor catabolic process" * Added definition "Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of low-density lipoprotein receptors." * Added definition dbxref GOC:mah to GO:0032804 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 11c5597 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 137333a * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1044542 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 15f1166 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 6f80de * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 758cca * Copied negative regulation of low-density lipoprotein receptor catabolic process (GO:0032804) (as OBO_REL:is_a), to regulation of low-density lipoprotein receptor catabolic process (GO:0032803) * Copied negative regulation of low-density lipoprotein receptor catabolic process (GO:0032804) (as OBO_REL:is_a), to negative regulation of protein biosynthetic process (GO:0017148) * Changed namespace of GO:0032804 from "null" to "biological_process" * Created new object GO:0032805 (macro) * Created object GO:0032805 of type obo:TERM. * Changed name of GO:0032805 from "" to "positive regulation of low-density lipoprotein receptor catabolic process" * Added definition "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of low-density lipoprotein receptors." * Added definition dbxref GOC:mah to GO:0032805 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 16e5a6d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1f2df27 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 18ba0a * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 15e11a8 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at d93ebb * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at a5a2eb * Copied positive regulation of low-density lipoprotein receptor catabolic process (GO:0032805) (as OBO_REL:is_a), to negative regulation of protein biosynthetic process (GO:0017148) * Copied positive regulation of low-density lipoprotein receptor catabolic process (GO:0032805) (as OBO_REL:is_a), to regulation of low-density lipoprotein receptor catabolic process (GO:0032803) * Changed namespace of GO:0032805 from "null" to "biological_process" * Created new object GO:0032806 (macro) * Created object GO:0032806 of type obo:TERM. * Changed name of GO:0032806 from "" to "carboxy-terminal domain protein kinase complex" * Added definition "A protein complex that phosphorylates Ser2 and Ser5 of RNA polymerase II C-terminal domain repeats; in Saccharomyces the complex contains Ctk1p, Ctk2p, and Ctk3p." * Added definition dbxref PMID:15047695 to GO:0032806 * Added definition dbxref PMID:16721054 to GO:0032806 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 6b24e5 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 436bf1 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 63c568 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 3553f9 * Copied carboxy-terminal domain protein kinase complex (GO:0032806) (as OBO_REL:is_a), to nuclear part (GO:0044428) * Copied carboxy-terminal domain protein kinase complex (GO:0032806) (as OBO_REL:is_a), to protein complex (GO:0043234) * Changed namespace of GO:0032806 from "null" to "cellular_component" * Created new object GO:0032807 (macro) * Created object GO:0032807 of type obo:TERM. * Changed name of GO:0032807 from "" to "DNA ligase IV complex" * Added definition "A eukaryotically conserved protein complex that contains DNA ligase IV and is involved in DNA repair by non-homologous end joining; in addition to the ligase, the complex also contains XRCC4 or a homolog, e.g. Saccharomyces Lif4p." * Added definition dbxref PMID:16314503 to GO:0032807 * Copied DNA ligase IV complex (GO:0032807) (as OBO_REL:is_a), to protein complex (GO:0043234) * Copied DNA ligase IV complex (GO:0032807) (as OBO_REL:is_a), to nuclear part (GO:0044428) * Changed namespace of GO:0032807 from "null" to "cellular_component" * Created new object GO:0032808 (macro) * Created object GO:0032808 of type obo:TERM. * Changed name of GO:0032808 from "" to "lacrimal gland development" * Added definition "The process whose specific outcome is the progression of the lacrimal gland over time, from its formation to the mature structure. The lacrimal gland produces secretions that lubricate and protect the cornea of the eye." * Added definition dbxref GOC:ln to GO:0032808 * Copied lacrimal gland development (GO:0032808) (as OBO_REL:is_a), to gland development (GO:0048732) * Copied lacrimal gland development (GO:0032808) (as part_of), to exocrine system development (GO:0035272) * Changed namespace of GO:0032808 from "null" to "biological_process" * Created new object GO:0032809 (macro) * Created object GO:0032809 of type obo:TERM. * Changed name of GO:0032809 from "" to "cell soma membrane" * Added definition "The plasma membrane of a cell that bears surface projections such as axons, dendrites, cilia, or flagella, excluding the plasma membrane on cell projections." * Added definition dbxref GOC:ecd to GO:0032809 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 11c07b8 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 13ee99b * Copied cell soma membrane (GO:0032809) (as part_of), to cell soma (GO:0043025) * Copied cell soma membrane (GO:0032809) (as OBO_REL:is_a), to plasma membrane part (GO:0044459) * Changed namespace of GO:0032809 from "null" to "cellular_component" * Created new object GO:0032810 (macro) * Created object GO:0032810 of type obo:TERM. * Changed name of GO:0032810 from "" to "sterol response element binding" * Added definition "Interacting selectively with the sterol response element (SRE), a nonpalindromic sequence found in the promoters of genes involved in lipid metabolism." * Added definition dbxref GOC:vk to GO:0032810 * Added definition dbxref PMID:11994399 to GO:0032810 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 15adc79 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 567cd7 * Copied sterol response element binding (GO:0032810) (as OBO_REL:is_a), to sequence-specific DNA binding (GO:0043565) * Changed namespace of GO:0032810 from "null" to "molecular_function" * Created new object GO:0032811 (macro) * Created object GO:0032811 of type obo:TERM. * Changed name of GO:0032811 from "" to "negative regulation of epinephrine secretion" * Added definition "Any process that stops, prevents or reduces the frequency, rate or extent of the regulated release of epinephrine." * Added definition dbxref GOC:vk to GO:0032811 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1b15f8 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 3f52fd * Copied negative regulation of epinephrine secretion (GO:0032811) (as part_of), to epinephrine secretion (GO:0048242) * Copied negative regulation of epinephrine secretion (GO:0032811) (as OBO_REL:is_a), to regulation of epinephrine secretion (GO:0014060) * Changed namespace of GO:0032811 from "null" to "biological_process" * Created new object GO:0032812 (macro) * Created object GO:0032812 of type obo:TERM. * Changed name of GO:0032812 from "" to "positive regulation of epinephrine secretion" * Added definition "Any process that activates or increases the frequency, rate or extent of the regulated release of epinephrine." * Added definition dbxref GOC:vk to GO:0032812 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1618412 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 125eec4 * Copied positive regulation of epinephrine secretion (GO:0032812) (as OBO_REL:is_a), to regulation of epinephrine secretion (GO:0014060) * Copied positive regulation of epinephrine secretion (GO:0032812) (as part_of), to epinephrine secretion (GO:0048242) * Changed namespace of GO:0032812 from "null" to "biological_process" * Created new object GO:0032813 (macro) * Created object GO:0032813 of type obo:TERM. * Changed name of GO:0032813 from "" to "tumor necrosis factor receptor superfamily binding" * Added definition "Interacting selectively with any member of the tumor necrosis factor receptor superfamily." * Added definition dbxref GOC:add to GO:0032813 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 15ea017 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1608755 * Copied tumor necrosis factor receptor superfamily binding (GO:0032813) (as OBO_REL:is_a), to cytokine activity (GO:0005125) * Changed namespace of GO:0032813 from "null" to "molecular_function" * Created new object GO:0032814 (macro) * Created object GO:0032814 of type obo:TERM. * Changed name of GO:0032814 from "" to "regulation of natural killer cell activation" * Added definition "Any process that modulates the frequency, rate or extent of natural killer cell activation." * Added definition dbxref GOC:mah to GO:0032814 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 54ec84 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 173e4d8 * Copied regulation of natural killer cell activation (GO:0032814) (as OBO_REL:is_a), to regulation of lymphocyte activation (GO:0051249) * Copied regulation of natural killer cell activation (GO:0032814) (as part_of), to natural killer cell activation (GO:0030101) * Changed namespace of GO:0032814 from "null" to "biological_process" * Created new object GO:0032815 (macro) * Created object GO:0032815 of type obo:TERM. * Changed name of GO:0032815 from "" to "negative regulation of natural killer cell activation" * Added definition "Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell activation." * Added definition dbxref GOC:mah to GO:0032815 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1b56039 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at c07a8e * Copied negative regulation of natural killer cell activation (GO:0032815) (as OBO_REL:is_a), to regulation of natural killer cell activation (GO:0032814) * Copied negative regulation of natural killer cell activation (GO:0032815) (as OBO_REL:is_a), to negative regulation of lymphocyte activation (GO:0051250) * Changed namespace of GO:0032815 from "null" to "biological_process" * Created new object GO:0032816 (macro) * Created object GO:0032816 of type obo:TERM. * Changed name of GO:0032816 from "" to "positive regulation of natural killer cell activation" * Added definition "Any process that activates or increases the frequency, rate or extent of natural killer cell activation." * Added definition dbxref GOC:mah to GO:0032816 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at ae2d20 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 114ccbf * Copied positive regulation of natural killer cell activation (GO:0032816) (as OBO_REL:is_a), to positive regulation of lymphocyte activation (GO:0051251) * Copied positive regulation of natural killer cell activation (GO:0032816) (as OBO_REL:is_a), to regulation of natural killer cell activation (GO:0032814) * Changed namespace of GO:0032816 from "null" to "biological_process" * Created new object GO:0032817 (macro) * Created object GO:0032817 of type obo:TERM. * Changed name of GO:0032817 from "" to "regulation of natural killer cell proliferation" * Added definition "Any process that modulates the frequency, rate or extent of natural killer cell proliferation." * Added definition dbxref GOC:mah to GO:0032817 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 8e229d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 182af40 * Copied regulation of natural killer cell proliferation (GO:0032817) (as part_of), to natural killer cell proliferation (GO:0001787) * Copied regulation of natural killer cell proliferation (GO:0032817) (as OBO_REL:is_a), to regulation of lymphocyte proliferation (GO:0050670) * Copied regulation of natural killer cell proliferation (GO:0032817) (as OBO_REL:is_a), to regulation of natural killer cell activation (GO:0032814) * Changed namespace of GO:0032817 from "null" to "biological_process" * Created new object GO:0032818 (macro) * Created object GO:0032818 of type obo:TERM. * Changed name of GO:0032818 from "" to "negative regulation of natural killer cell proliferation" * Added definition "Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell proliferation." * Added definition dbxref GOC:mah to GO:0032818 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at bfb146 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 10f6b0c * Copied negative regulation of natural killer cell proliferation (GO:0032818) (as OBO_REL:is_a), to negative regulation of natural killer cell activation (GO:0032815) * Copied negative regulation of natural killer cell proliferation (GO:0032818) (as OBO_REL:is_a), to negative regulation of lymphocyte proliferation (GO:0050672) * Copied negative regulation of natural killer cell proliferation (GO:0032818) (as OBO_REL:is_a), to regulation of natural killer cell proliferation (GO:0032817) * Changed namespace of GO:0032818 from "null" to "biological_process" * Created new object GO:0032819 (macro) * Created object GO:0032819 of type obo:TERM. * Changed name of GO:0032819 from "" to "positive regulation of natural killer cell proliferation" * Added definition "Any process that activates or increases the frequency, rate or extent of natural killer cell proliferation." * Added definition dbxref GOC:mah to GO:0032819 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 13cf5e3 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 133245c * Copied positive regulation of natural killer cell proliferation (GO:0032819) (as OBO_REL:is_a), to regulation of natural killer cell proliferation (GO:0032817) * Copied positive regulation of natural killer cell proliferation (GO:0032819) (as OBO_REL:is_a), to positive regulation of natural killer cell activation (GO:0032816) * Copied positive regulation of natural killer cell proliferation (GO:0032819) (as OBO_REL:is_a), to positive regulation of lymphocyte proliferation (GO:0050671) * Changed namespace of GO:0032819 from "null" to "biological_process" * Created new object GO:0032820 (macro) * Created object GO:0032820 of type obo:TERM. * Changed name of GO:0032820 from "" to "regulation of natural killer cell proliferation during immune response" * Added definition "Any process that modulates the frequency, rate or extent of natural killer cell proliferation during an immune response." * Added definition dbxref GOC:mah to GO:0032820 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 9848f2 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1dd302d * Copied regulation of natural killer cell proliferation during immune response (GO:0032820) (as part_of), to natural killer cell proliferation during immune response (GO:0002324) * Copied regulation of natural killer cell proliferation during immune response (GO:0032820) (as OBO_REL:is_a), to regulation of natural killer cell proliferation (GO:0032817) * Changed namespace of GO:0032820 from "null" to "biological_process" * Created new object GO:0032821 (macro) * Created object GO:0032821 of type obo:TERM. * Changed name of GO:0032821 from "" to "negative regulation of natural killer cell proliferation during immune response" * Added definition "Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell proliferation during an immune response." * Added definition dbxref GOC:mah to GO:0032821 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 8613bb * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 796bb2 * Copied negative regulation of natural killer cell proliferation during immune response (GO:0032821) (as OBO_REL:is_a), to negative regulation of natural killer cell proliferation (GO:0032818) * Copied negative regulation of natural killer cell proliferation during immune response (GO:0032821) (as OBO_REL:is_a), to regulation of natural killer cell proliferation during immune response (GO:0032820) * Changed namespace of GO:0032821 from "null" to "biological_process" * Created new object GO:0032822 (macro) * Created object GO:0032822 of type obo:TERM. * Changed name of GO:0032822 from "" to "positive regulation of natural killer cell proliferation during immune response" * Added definition "Any process that activates or increases the frequency, rate or extent of natural killer cell proliferation during an immune response." * Added definition dbxref GOC:mah to GO:0032822 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 18d7b91 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1ab769e * Copied positive regulation of natural killer cell proliferation during immune response (GO:0032822) (as OBO_REL:is_a), to regulation of natural killer cell proliferation during immune response (GO:0032820) * Copied positive regulation of natural killer cell proliferation during immune response (GO:0032822) (as OBO_REL:is_a), to positive regulation of natural killer cell proliferation (GO:0032819) * Changed namespace of GO:0032822 from "null" to "biological_process" * Created new object GO:0032823 (macro) * Created object GO:0032823 of type obo:TERM. * Changed name of GO:0032823 from "" to "regulation of natural killer cell differentiation" * Added definition "Any process that modulates the frequency, rate or extent of natural killer cell differentiation." * Added definition dbxref GOC:mah to GO:0032823 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1f8967e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1605543 * Copied regulation of natural killer cell differentiation (GO:0032823) (as part_of), to natural killer cell differentiation (GO:0001779) * Copied regulation of natural killer cell differentiation (GO:0032823) (as OBO_REL:is_a), to regulation of natural killer cell activation (GO:0032814) * Copied regulation of natural killer cell differentiation (GO:0032823) (as OBO_REL:is_a), to regulation of lymphocyte differentiation (GO:0045619) * Changed namespace of GO:0032823 from "null" to "biological_process" * Created new object GO:0032824 (macro) * Created object GO:0032824 of type obo:TERM. * Changed name of GO:0032824 from "" to "negative regulation of natural killer cell differentiation" * Added definition "Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell differentiation." * Added definition dbxref GOC:mah to GO:0032824 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1fc2741 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1752dd5 * Copied negative regulation of natural killer cell differentiation (GO:0032824) (as OBO_REL:is_a), to regulation of natural killer cell differentiation (GO:0032823) * Changed namespace of GO:0032824 from "null" to "biological_process" * Created new object GO:0032825 (macro) * Created object GO:0032825 of type obo:TERM. * Changed name of GO:0032825 from "" to "positive regulation of natural killer cell differentiation" * Added definition "Any process that activates or increases the frequency, rate or extent of natural killer cell differentiation." * Added definition dbxref GOC:mah to GO:0032825 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 141451 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 41d3ee * Copied positive regulation of natural killer cell differentiation (GO:0032825) (as OBO_REL:is_a), to regulation of natural killer cell differentiation (GO:0032823) * Changed namespace of GO:0032825 from "null" to "biological_process" * Created new object GO:0032826 (macro) * Created object GO:0032826 of type obo:TERM. * Changed name of GO:0032826 from "" to "regulation of natural killer cell differentiation during immune response" * Added definition "Any process that modulates the frequency, rate or extent of natural killer cell differentiation during an immune response." * Added definition dbxref GOC:mah to GO:0032826 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c0d03d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1a78e1c * Copied regulation of natural killer cell differentiation during immune response (GO:0032826) (as part_of), to natural killer cell differentiation during immune response (GO:0002325) * Copied regulation of natural killer cell differentiation during immune response (GO:0032826) (as OBO_REL:is_a), to regulation of natural killer cell differentiation (GO:0032823) * Changed namespace of GO:0032826 from "null" to "biological_process" * Created new object GO:0032827 (macro) * Created object GO:0032827 of type obo:TERM. * Changed name of GO:0032827 from "" to "negative regulation of natural killer cell differentiation during immune response" * Added definition "Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell differentiation during an immune response." * Added definition dbxref GOC:mah to GO:0032827 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 162ff46 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 657875 * Copied negative regulation of natural killer cell differentiation during immune response (GO:0032827) (as OBO_REL:is_a), to negative regulation of natural killer cell differentiation (GO:0032824) * Copied negative regulation of natural killer cell differentiation during immune response (GO:0032827) (as OBO_REL:is_a), to regulation of natural killer cell differentiation during immune response (GO:0032826) * Changed namespace of GO:0032827 from "null" to "biological_process" * Created new object GO:0032828 (macro) * Created object GO:0032828 of type obo:TERM. * Changed name of GO:0032828 from "" to "positive regulation of natural killer cell differentiation during immune response" * Added definition "Any process that activates or increases the frequency, rate or extent of natural killer cell differentiation during an immune response." * Added definition dbxref GOC:mah to GO:0032828 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c775a3 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1fc30a1 * Copied positive regulation of natural killer cell differentiation during immune response (GO:0032828) (as OBO_REL:is_a), to regulation of natural killer cell differentiation during immune response (GO:0032826) * Copied positive regulation of natural killer cell differentiation during immune response (GO:0032828) (as OBO_REL:is_a), to positive regulation of natural killer cell differentiation (GO:0032825) * Changed namespace of GO:0032828 from "null" to "biological_process" * Created new object GO:0032829 (macro) * Created object GO:0032829 of type obo:TERM. * Changed name of GO:0032829 from "" to "regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation" * Added definition "Any process that modulates the frequency, rate or extent of differentiation of CD4-positive, CD25-positive, alpha-beta regulatory T cells." * Added definition dbxref GOC:mah to GO:0032829 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1dccb42 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at a46d79 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 10f451d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 182902f * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at c80abe * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 139664d * Copied regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (GO:0032829) (as OBO_REL:is_a), to regulation of regulatory T cell differentiation (GO:0045589) * Copied regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (GO:0032829) (as part_of), to CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (GO:0002361) * Changed namespace of GO:0032829 from "null" to "biological_process" * Created new object GO:0032830 (macro) * Created object GO:0032830 of type obo:TERM. * Changed name of GO:0032830 from "" to "negative regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation" * Added definition "Any process that stops, prevents or reduces the frequency, rate or extent of differentiation of CD4-positive, CD25-positive, alpha-beta regulatory T cells." * Added definition dbxref GOC:mah to GO:0032830 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 16b5317 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 11c1a17 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1f51604 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 17897fb * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 41f3fb * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1f91415 * Copied negative regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (GO:0032830) (as OBO_REL:is_a), to negative regulation of regulatory T cell differentiation (GO:0045590) * Copied negative regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (GO:0032830) (as OBO_REL:is_a), to CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (GO:0002361) * Changed namespace of GO:0032830 from "null" to "biological_process" * Created new object GO:0032831 (macro) * Created object GO:0032831 of type obo:TERM. * Changed name of GO:0032831 from "" to "positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation" * Added definition "Any process that activates or increases the frequency, rate or extent of differentiation of CD4-positive, CD25-positive, alpha-beta regulatory T cells." * Added definition dbxref GOC:mah to GO:0032831 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1958d75 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 17a2c53 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1f3fff4 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 28f875 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1cfd3aa * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 15144fb * Copied positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (GO:0032831) (as OBO_REL:is_a), to CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (GO:0002361) * Copied positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (GO:0032831) (as OBO_REL:is_a), to positive regulation of regulatory T cell differentiation (GO:0045591) * Changed namespace of GO:0032831 from "null" to "biological_process" * Created new object GO:0032832 (macro) * Created object GO:0032832 of type obo:TERM. * Changed name of GO:0032832 from "" to "regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response" * Added definition "Any process that modulates the frequency, rate or extent of differentiation of CD4-positive, CD25-positive, alpha-beta regulatory T cells during an immune response." * Added definition dbxref GOC:mah to GO:0032832 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 87df51 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 5653a0 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 18c66fe * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1bb3ae4 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 11755c6 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1007b59 * Copied regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response (GO:0032832) (as OBO_REL:is_a), to regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (GO:0032829) * Changed namespace of GO:0032832 from "null" to "biological_process" * Created new object GO:0032833 (macro) * Created object GO:0032833 of type obo:TERM. * Changed name of GO:0032833 from "" to "negative regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response" * Added definition "Any process that stops, prevents or reduces the frequency, rate or extent of differentiation of CD4-positive, CD25-positive, alpha-beta regulatory T cells during an immune response." * Added definition dbxref GOC:mah to GO:0032833 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at a23ba8 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at fa9c26 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 121b06d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at c5db40 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1bd87c5 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1ccfd3 * Copied negative regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response (GO:0032833) (as OBO_REL:is_a), to negative regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (GO:0032830) * Changed namespace of GO:0032833 from "null" to "biological_process" * Created new object GO:0032834 (macro) * Created object GO:0032834 of type obo:TERM. * Changed name of GO:0032834 from "" to "positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response" * Added definition "Any process that activates or increases the frequency, rate or extent of differentiation of CD4-positive, CD25-positive, alpha-beta regulatory T cells during an immune response." * Added definition dbxref GOC:mah to GO:0032834 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 19027c0 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 121efad * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at fe7078 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 89dbeb * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at c5457b * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 15490af * Copied positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response (GO:0032834) (as OBO_REL:is_a), to positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (GO:0032831) * Changed namespace of GO:0032834 from "null" to "biological_process" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at e6eb7c * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 6e55d9 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c64d12 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1eddcba * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1366eb1 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 9d4e11 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1705706 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 615f24 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at ad5581 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1c8a538 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1d73f05 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 6a7ad3 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at a5c866 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 7bb8a * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1a99a7c * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1dd48df * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at db3ef8 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 33333 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 168148 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 181b8af * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 184028d * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1c39581 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 18c752a * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 604e89 * Changed name of GO:0000174 from "inactivation of MAPK (mating sensu the Saccharomyces research community)" to "inactivation of MAPK (mating sensu Saccharomyces)" * Changed comment from "This term was made obsolete because more specific children exist. To update annotations, consider the cellular component terms 'cytosolic large ribosomal subunit (sensu the Bacteria research community) ; GO:0009282' and 'cytosolic large ribosomal subunit (sensu the Eukaryota research community) ; GO:0005842'." to "This term was made obsolete because more specific children exist. To update annotations, consider the cellular component terms 'cytosolic large ribosomal subunit (sensu Bacteria) ; GO:0009282' and 'cytosolic large ribosomal subunit (sensu Eukaryota) ; GO:0005842'." * Changed comment from "This term was made obsolete because more specific children exist. To update annotations, consider the cellular component terms 'cytosolic small ribosomal subunit (sensu the Bacteria research community) ; GO:0009283' and 'cytosolic small ribosomal subunit (sensu the Eukaryota research community) ; GO:0005843'." to "This term was made obsolete because more specific children exist. To update annotations, consider the cellular component terms 'cytosolic small ribosomal subunit (sensu Bacteria) ; GO:0009283' and 'cytosolic small ribosomal subunit (sensu Eukaryota) ; GO:0005843'." * Changed name of GO:0000202 from "MAPKKK cascade during sporulation (sensu the Saccharomyces research community)" to "MAPKKK cascade during sporulation (sensu Saccharomyces)" * Changed comment from "This term was made obsolete because it is a gene product specific term. To update annotations, consider the biological process terms 'sporulation (sensu the Fungi research community)' ; GO:0030437 or 'signal transduction' ; GO:0007165." to "This term was made obsolete because it is a gene product specific term. To update annotations, consider the biological process terms 'sporulation (sensu Fungi)' ; GO:0030437 or 'signal transduction' ; GO:0007165." * Changed name of GO:0000203 from "activation of MAPKKK during sporulation (sensu the Saccharomyces research community)" to "activation of MAPKKK during sporulation (sensu Saccharomyces)" * Changed comment from "This term was made obsolete because it is a gene product specific term. To update annotations, consider the biological process terms 'sporulation (sensu the Fungi research community)' ; GO:0030437 or 'signal transduction' ; GO:0007165." to "This term was made obsolete because it is a gene product specific term. To update annotations, consider the biological process terms 'sporulation (sensu Fungi)' ; GO:0030437 or 'signal transduction' ; GO:0007165." * Changed name of GO:0000204 from "activation of MAPKK during sporulation (sensu the Saccharomyces research community)" to "activation of MAPKK during sporulation (sensu Saccharomyces)" * Changed comment from "This term was made obsolete because it is a gene product specific term. To update annotations, consider the biological process terms 'sporulation (sensu the Fungi research community)' ; GO:0030437 or 'signal transduction' ; GO:0007165." to "This term was made obsolete because it is a gene product specific term. To update annotations, consider the biological process terms 'sporulation (sensu Fungi)' ; GO:0030437 or 'signal transduction' ; GO:0007165." * Changed name of GO:0000205 from "activation of MAPK during sporulation (sensu the Saccharomyces research community)" to "activation of MAPK during sporulation (sensu Saccharomyces)" * Changed comment from "This term was made obsolete because it is a gene product specific term. To update annotations, consider the biological process terms 'sporulation (sensu the Fungi research community)' ; GO:0030437 or 'signal transduction' ; GO:0007165." to "This term was made obsolete because it is a gene product specific term. To update annotations, consider the biological process terms 'sporulation (sensu Fungi)' ; GO:0030437 or 'signal transduction' ; GO:0007165." * Changed name of GO:0000206 from "inactivation of MAPK during sporulation (sensu the Saccharomyces research community)" to "inactivation of MAPK during sporulation (sensu Saccharomyces)" * Changed comment from "This term was made obsolete because it is a gene product specific term. To update annotations, consider the biological process terms 'sporulation (sensu the Fungi research community)' ; GO:0030437 or 'signal transduction' ; GO:0007165." to "This term was made obsolete because it is a gene product specific term. To update annotations, consider the biological process terms 'sporulation (sensu Fungi)' ; GO:0030437 or 'signal transduction' ; GO:0007165." * Changed name of GO:0000207 from "nuclear translocation of MAPK during sporulation (sensu the Saccharomyces research community)" to "nuclear translocation of MAPK during sporulation (sensu Saccharomyces)" * Changed comment from "This term was made obsolete because it is a gene product specific term. To update annotations, consider the biological process terms 'sporulation (sensu the Fungi research community)' ; GO:0030437 or 'signal transduction' ; GO:0007165." to "This term was made obsolete because it is a gene product specific term. To update annotations, consider the biological process terms 'sporulation (sensu Fungi)' ; GO:0030437 or 'signal transduction' ; GO:0007165." * Changed name of GO:0000274 from "proton-transporting ATP synthase, stator stalk (sensu the Eukaryota research community)" to "proton-transporting ATP synthase, stator stalk (sensu Eukaryota)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at c4069d * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 18e55d1 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1a420a0 * Changed name of GO:0000275 from "proton-transporting ATP synthase complex, catalytic core F(1) (sensu the Eukaryota research community)" to "proton-transporting ATP synthase complex, catalytic core F(1) (sensu Eukaryota)" * Changed name of GO:0000276 from "proton-transporting ATP synthase complex, coupling factor F(o) (sensu the Eukaryota research community)" to "proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 5a22a9 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 199ad6e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 495234 * Changed comment from "Note that this term was split from 'bud site selection/establishment of cell polarity (sensu the Saccharomyces research community) ; GO:0007115' (sibling term 'establishment of cell polarity (sensu the Saccharomyces research community) ; GO:0000283')." to "Note that this term was split from 'bud site selection/establishment of cell polarity (sensu Saccharomyces) ; GO:0007115' (sibling term 'establishment of cell polarity (sensu Saccharomyces) ; GO:0000283')." * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1b3f5eb * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1d64656 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at a3ba11 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 10ce7c2 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 439d2d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1041757 * Changed name of GO:0000324 from "vacuole (sensu the Fungi research community)" to "vacuole (sensu Fungi)" * Changed name of GO:0000325 from "vacuole (sensu the Magnoliophyta research community)" to "vacuole (sensu Magnoliophyta)" * Changed name of GO:0000328 from "vacuolar lumen (sensu the Fungi research community)" to "vacuolar lumen (sensu Fungi)" * Changed name of GO:0000329 from "vacuolar membrane (sensu the Fungi research community)" to "vacuolar membrane (sensu Fungi)" * Changed name of GO:0000330 from "vacuolar lumen (sensu the Magnoliophyta research community)" to "vacuolar lumen (sensu Magnoliophyta)" * Changed name of GO:0000345 from "cytosolic DNA-directed RNA polymerase (sensu the Bacteria research community)" to "cytosolic DNA-directed RNA polymerase (sensu Bacteria)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1988490 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 27432d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1ab4282 * Changed name of GO:0000502 from "proteasome complex (sensu the Eukaryota research community)" to "proteasome complex (sensu Eukaryota)" * Changed name of GO:0000503 from "proteasome core complex (sensu the Bacteria research community)" to "proteasome core complex (sensu Bacteria)" * Changed name of GO:0000504 from "proteasome regulatory particle (sensu the Bacteria research community)" to "proteasome regulatory particle (sensu Bacteria)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 9ba43c * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 3b73f8 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 13a9fed * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1d98764 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 47b835 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 8ebf84 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1bf9f81 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 180e9b8 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 704b7f * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 6cb884 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1c61183 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at a7e3a8 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 534286 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 3473c9 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 19db72e * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1654a8f * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 102036a * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 12e24aa * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 692b0b * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 8911a6 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at e5dde1 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 149f7db * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 12f6d60 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at b5d0cd * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 9f4525 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 749f3a * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 81d8ab * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at b7e9ca * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 55fe61 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1afb867 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1739d1d * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 14ff655 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at b563d8 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at ae12e3 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 5a2083 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 10cb215 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 7f97ce * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at c763ff * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 763a59 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1f0ac5f * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c4afb7 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1ec32f5 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 574d6 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 3991b7 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 18d94e1 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 296ba8 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 15b0487 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 865254 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 8722b6 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1f7e334 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1657737 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 75c5d3 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at ed63f * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 13f04a * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1048c5d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 19b4ae9 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 5334f4 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at b9b19a * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 13b18b5 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at d35247 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1bee707 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 31b4db * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1589e2b * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at f83155 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 6ef636 * Changed name of GO:0000905 from "fruiting body formation during asexual reproduction (sensu the Fungi research community)" to "fruiting body formation during asexual reproduction (sensu Fungi)" * Changed name of GO:0000909 from "fruiting body formation during sexual reproduction (sensu the Fungi research community)" to "fruiting body formation during sexual reproduction (sensu Fungi)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at e65db5 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 121689 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 18586aa * Changed name of GO:0000925 from "gamma-tubulin ring complex, centrosomal (sensu the Metazoa research community)" to "gamma-tubulin ring complex, centrosomal (sensu Metazoa)" * Changed name of GO:0000926 from "gamma-tubulin large complex (sensu the Metazoa research community)" to "gamma-tubulin large complex (sensu Metazoa)" * Changed name of GO:0000927 from "gamma-tubulin small complex (sensu the Metazoa research community)" to "gamma-tubulin small complex (sensu Metazoa)" * Changed name of GO:0000928 from "gamma-tubulin complex (sensu the Saccharomyces research community)" to "gamma-tubulin complex (sensu Saccharomyces)" * Changed name of GO:0000929 from "gamma-tubulin large complex (sensu the SchizoSaccharomyces research community)" to "gamma-tubulin large complex (sensu SchizoSaccharomyces)" * Changed name of GO:0001403 from "invasive growth (sensu the Saccharomyces research community)" to "invasive growth (sensu Saccharomyces)" * Changed name of GO:0001410 from "chlamydospore formation (sensu the Candida albicans research community)" to "chlamydospore formation (sensu Candida albicans)" * Changed name of GO:0001542 from "ovulation (sensu the Mammalia research community)" to "ovulation (sensu Mammalia)" * Changed name of GO:0001700 from "embryonic development (sensu the Insecta research community)" to "embryonic development (sensu Insecta)" * Changed name of GO:0001701 from "embryonic development (sensu the Mammalia research community)" to "embryonic development (sensu Mammalia)" * Changed name of GO:0001702 from "gastrulation (sensu the Deuterostomia research community)" to "gastrulation (sensu Deuterostomia)" * Changed name of GO:0001703 from "gastrulation (sensu the Protostomia research community)" to "gastrulation (sensu Protostomia)" * Changed name of GO:0001744 from "optic placode formation (sensu the Endopterygota research community)" to "optic placode formation (sensu Endopterygota)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 14c1b45 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 19283fe * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 17b42c * Changed name of GO:0001745 from "compound eye morphogenesis (sensu the Endopterygota research community)" to "compound eye morphogenesis (sensu Endopterygota)" * Changed name of GO:0001747 from "eye development (sensu the Mammalia research community)" to "eye development (sensu Mammalia)" * Changed name of GO:0001748 from "optic placode development (sensu the Endopterygota research community)" to "optic placode development (sensu Endopterygota)" * Changed name of GO:0001749 from "non-eye photoreceptor development (sensu the Endopterygota research community)" to "non-eye photoreceptor development (sensu Endopterygota)" * Changed name of GO:0001751 from "eye photoreceptor cell differentiation (sensu the Endopterygota research community)" to "eye photoreceptor cell differentiation (sensu Endopterygota)" * Changed name of GO:0001752 from "eye photoreceptor fate commitment (sensu the Endopterygota research community)" to "eye photoreceptor fate commitment (sensu Endopterygota)" * Changed name of GO:0001753 from "adult eye photoreceptor development (sensu the Drosophila research community)" to "adult eye photoreceptor development (sensu Drosophila)" * Changed comment from "This term was made obsolete because eye photoreceptors have completed their development by the time the adult phase begins. To update annotations, consider the biological process term 'eye photoreceptor development (sensu the Endopterygota research community) ; GO:0042051'." to "This term was made obsolete because eye photoreceptors have completed their development by the time the adult phase begins. To update annotations, consider the biological process term 'eye photoreceptor development (sensu Endopterygota) ; GO:0042051'." * Changed name of GO:0002072 from "optic cup morphogenesis (sensu the Mammalia research community)" to "optic cup morphogenesis (sensu Mammalia)" * Changed name of GO:0002073 from "retina development (sensu the Mammalia research community)" to "retina development (sensu Mammalia)" * Changed name of GO:0002074 from "extraocular skeletal muscle development (sensu the Mammalia research community)" to "extraocular skeletal muscle development (sensu Mammalia)" * Changed name of GO:0002075 from "somitomeric trunk muscle development (sensu the Mammalia research community)" to "somitomeric trunk muscle development (sensu Mammalia)" * Changed name of GO:0002088 from "lens development (sensu the Vertebrata research community)" to "lens development (sensu Vertebrata)" * Changed name of GO:0002089 from "lens morphogenesis (sensu the Vertebrata research community)" to "lens morphogenesis (sensu Vertebrata)" * Changed name of GO:0002117 from "larval development (sensu the Amphibia research community)" to "larval development (sensu Amphibia)" * Changed name of GO:0002119 from "larval development (sensu the Nematoda research community)" to "larval development (sensu Nematoda)" * Changed name of GO:0002165 from "larval or pupal development (sensu the Insecta research community)" to "larval or pupal development (sensu Insecta)" * Changed name of GO:0002168 from "larval development (sensu the Insecta research community)" to "larval development (sensu Insecta)" * Changed name of GO:0002219 from "activation of innate immune response (sensu the Viridiplantae research community)" to "activation of innate immune response (sensu Viridiplantae)" * Changed name of GO:0002226 from "innate immune response (sensu the Viridiplantae research community)" to "innate immune response (sensu Viridiplantae)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 35c83d * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at ed4d1d * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 161b9c1 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at ea3dff * Changed name of GO:0002459 from "adaptive immune response (sensu the Myxinidae and Petromyzontidae research community)" to "adaptive immune response (sensu Myxinidae and Petromyzontidae)" * Changed name of GO:0002460 from "adaptive immune response (sensu the Gnathostomata research community)" to "adaptive immune response (sensu Gnathostomata)" * Changed name of GO:0002822 from "regulation of adaptive immune response (sensu the Gnathostomata research community)" to "regulation of adaptive immune response (sensu Gnathostomata)" * Changed name of GO:0002823 from "negative regulation of adaptive immune response (sensu the Gnathostomata research community)" to "negative regulation of adaptive immune response (sensu Gnathostomata)" * Changed name of GO:0002824 from "positive regulation of adaptive immune response (sensu the Gnathostomata research community)" to "positive regulation of adaptive immune response (sensu Gnathostomata)" * Deleted NADPH-hemoprotein reductase activity (GO:0003958) from oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor (GO:0016652) with OBO_REL:is_a * Copied NADPH-hemoprotein reductase activity (GO:0003958) (as OBO_REL:is_a), to oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor (GO:0016653) * Deleted cytochrome-b5 reductase activity (GO:0004128) from oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor (GO:0016652) with OBO_REL:is_a * Copied cytochrome-b5 reductase activity (GO:0004128) (as OBO_REL:is_a), to oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor (GO:0016653) * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 8c55bf * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1517402 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 973101 * Changed comment from "See also the cellular component term 'signal recognition particle (sensu the Eukaryota research community) ; GO:0005786'." to "See also the cellular component term 'signal recognition particle (sensu Eukaryota) ; GO:0005786'." * Deleted tumor necrosis factor receptor binding (GO:0005164) from cytokine activity (GO:0005125) with OBO_REL:is_a * Copied tumor necrosis factor receptor binding (GO:0005164) (as OBO_REL:is_a), to tumor necrosis factor receptor superfamily binding (GO:0032813) * Deleted CD40 receptor binding (GO:0005174) from cytokine activity (GO:0005125) with OBO_REL:is_a * Copied CD40 receptor binding (GO:0005174) (as OBO_REL:is_a), to tumor necrosis factor receptor superfamily binding (GO:0032813) * Deleted CD27 receptor binding (GO:0005175) from cytokine activity (GO:0005125) with OBO_REL:is_a * Copied CD27 receptor binding (GO:0005175) (as OBO_REL:is_a), to tumor necrosis factor receptor superfamily binding (GO:0032813) * Changed name of GO:0005188 from "larval serum protein (sensu the Insecta research community)" to "larval serum protein (sensu Insecta)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 126617 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1ec87a2 * Changed name of GO:0005213 from "structural constituent of chorion (sensu the Insecta research community)" to "structural constituent of chorion (sensu Insecta)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1bcba63 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 170e695 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 132546d * Changed name of GO:0005214 from "structural constituent of cuticle (sensu the Insecta research community)" to "structural constituent of cuticle (sensu Insecta)" * Changed name of GO:0005578 from "extracellular matrix (sensu the Metazoa research community)" to "extracellular matrix (sensu Metazoa)" * Changed name of GO:0005619 from "spore wall (sensu the Fungi research community)" to "spore wall (sensu Fungi)" * Changed definition from "OBSOLETE. A sac-like fruiting body (ascomycete Fungi research community); contains ascospores (typically eight in number)." to "OBSOLETE. A sac-like fruiting body (ascomycete Fungi); contains ascospores (typically eight in number)." * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 144f402 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1efd5e9 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at c4c253 * Changed name of GO:0005747 from "respiratory chain complex I (sensu the Eukaryota research community)" to "respiratory chain complex I (sensu Eukaryota)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1b1e6ed * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at afd58d * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1ed34f3 * Changed name of GO:0005749 from "respiratory chain complex II (sensu the Eukaryota research community)" to "respiratory chain complex II (sensu Eukaryota)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 2f72d3 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 11b7dd1 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1e12f2a * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at df8f29 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 12ffa54 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at dbc02e * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 12618c2 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 236a2b * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 10f4ade * Changed name of GO:0005750 from "respiratory chain complex III (sensu the Eukaryota research community)" to "respiratory chain complex III (sensu Eukaryota)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at fc6bbb * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 4df37 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1dab6c4 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 150c25 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1d06bd9 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 589d85 * Changed name of GO:0005751 from "respiratory chain complex IV (sensu the Eukaryota research community)" to "respiratory chain complex IV (sensu Eukaryota)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1cdace4 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 11ee49 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 13306f7 * Changed name of GO:0005753 from "proton-transporting ATP synthase complex (sensu the Eukaryota research community)" to "proton-transporting ATP synthase complex (sensu Eukaryota)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 10e6391 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1ab04bb * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at c3af97 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 13d1008 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1e78923 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1dc6e53 * Changed name of GO:0005754 from "proton-transporting ATP synthase, catalytic core (sensu the Eukaryota research community)" to "proton-transporting ATP synthase, catalytic core (sensu Eukaryota)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at cf1b7c * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1158b21 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1615345 * Changed name of GO:0005756 from "proton-transporting ATP synthase, central stalk (sensu the Eukaryota research community)" to "proton-transporting ATP synthase, central stalk (sensu Eukaryota)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at a1f056 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1a9d5d1 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 114cbc4 * Changed name of GO:0005786 from "signal recognition particle (sensu the Eukaryota research community)" to "signal recognition particle (sensu Eukaryota)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 4dd75e * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 767e54 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 15fbf15 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at fa3d07 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at bccb62 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at ccab01 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at eee186 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1186271 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1e6ee67 * Changed name of GO:0005830 from "cytosolic ribosome (sensu the Eukaryota research community)" to "cytosolic ribosome (sensu Eukaryota)" * Changed comment from "This term was made obsolete because its definition was inaccurate. To update annotations, consider the cellular component terms 'proteasome core complex (sensu the Bacteria research community) ; GO:0000503', 'proteasome regulatory particle (sensu the Bacteria research community) ; GO:0000504', and 'proteasome complex (sensu the Eukaryota research community) ; GO:0000502' and its children." to "This term was made obsolete because its definition was inaccurate. To update annotations, consider the cellular component terms 'proteasome core complex (sensu Bacteria) ; GO:0000503', 'proteasome regulatory particle (sensu Bacteria) ; GO:0000504', and 'proteasome complex (sensu Eukaryota) ; GO:0000502' and its children." * Changed name of GO:0005838 from "proteasome regulatory particle (sensu the Eukaryota research community)" to "proteasome regulatory particle (sensu Eukaryota)" * Changed name of GO:0005839 from "proteasome core complex (sensu the Eukaryota research community)" to "proteasome core complex (sensu Eukaryota)" * Changed name of GO:0005842 from "cytosolic large ribosomal subunit (sensu the Eukaryota research community)" to "cytosolic large ribosomal subunit (sensu Eukaryota)" * Changed name of GO:0005843 from "cytosolic small ribosomal subunit (sensu the Eukaryota research community)" to "cytosolic small ribosomal subunit (sensu Eukaryota)" * Deleted voltage-gated calcium channel complex (GO:0005891) from integral to plasma membrane (GO:0005887) with part_of * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 2de48f * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at f89376 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 19930ae * Changed name of GO:0005947 from "alpha-ketoglutarate dehydrogenase complex (sensu the Eukaryota research community)" to "alpha-ketoglutarate dehydrogenase complex (sensu Eukaryota)" * Changed name of GO:0005962 from "isocitrate dehydrogenase complex (NAD+) (sensu the Eukaryota research community)" to "isocitrate dehydrogenase complex (NAD+) (sensu Eukaryota)" * Changed name of GO:0005967 from "pyruvate dehydrogenase complex (sensu the Eukaryota research community)" to "pyruvate dehydrogenase complex (sensu Eukaryota)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 4b07eb * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1f50fec * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1e85d4a * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 44e1bf * Changed name of GO:0006960 from "antimicrobial humoral response (sensu the Protostomia research community)" to "antimicrobial humoral response (sensu Protostomia)" * Changed name of GO:0006961 from "antibacterial humoral response (sensu the Protostomia research community)" to "antibacterial humoral response (sensu Protostomia)" * Changed name of GO:0006966 from "antifungal humoral response (sensu the Protostomia research community)" to "antifungal humoral response (sensu Protostomia)" * Changed name of GO:0007001 from "chromosome organization and biogenesis (sensu the Eukaryota research community)" to "chromosome organization and biogenesis (sensu Eukaryota)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 40f91a * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1a2431f * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1e4d632 * Deleted vacuolar acidification (GO:0007035) from vacuolar transport (GO:0007034) with part_of * Copied vacuolar acidification (GO:0007035) (as part_of), to vacuole organization and biogenesis (GO:0007033) * Changed name of GO:0007053 from "male meiotic spindle assembly (sensu the Metazoa research community)" to "male meiotic spindle assembly (sensu Metazoa)" * Changed name of GO:0007054 from "male meiosis I spindle assembly (sensu the Metazoa research community)" to "male meiosis I spindle assembly (sensu Metazoa)" * Changed name of GO:0007055 from "male meiosis II spindle assembly (sensu the Metazoa research community)" to "male meiosis II spindle assembly (sensu Metazoa)" * Changed name of GO:0007056 from "female meiotic spindle assembly (sensu the Metazoa research community)" to "female meiotic spindle assembly (sensu Metazoa)" * Changed name of GO:0007057 from "female meiosis I spindle assembly (sensu the Metazoa research community)" to "female meiosis I spindle assembly (sensu Metazoa)" * Changed name of GO:0007058 from "female meiosis II spindle assembly (sensu the Metazoa research community)" to "female meiosis II spindle assembly (sensu Metazoa)" * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at aa8321 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 870aa4 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1cbc577 * Changed name of GO:0007115 from "bud site selection/establishment of cell polarity (sensu the Saccharomyces research community)" to "bud site selection/establishment of cell polarity (sensu Saccharomyces)" * Changed comment from "This term was made obsolete because it represents two concepts. To update annotations, consider the biological process terms 'establishment of cell polarity (sensu the Fungi research community) ; GO:0030468' and 'bud site selection ; GO:0000282'." to "This term was made obsolete because it represents two concepts. To update annotations, consider the biological process terms 'establishment of cell polarity (sensu Fungi) ; GO:0030468' and 'bud site selection ; GO:0000282'." * Changed comment from "This term was made obsolete because it has been split into two new terms. To update annotations, consider the biological process terms 'invasive growth (sensu the Saccharomyces research community) ; GO:0001403', 'entry into host ; GO:0044409' and 'growth within host ; GO:0044412'." to "This term was made obsolete because it has been split into two new terms. To update annotations, consider the biological process terms 'invasive growth (sensu Saccharomyces) ; GO:0001403', 'entry into host ; GO:0044409' and 'growth within host ; GO:0044412'." * Changed comment from "This term was made obsolete because it describes a phenotype rather than a biological goal. To update annotations, consider the biological process terms that describe the growth pattern leading to the colony morphology; for example, in S. cerevisiae a particular colony morphology is indicative of the growth pattern 'invasive growth (sensu the Saccharomyces research community)' (GO:0001403)." to "This term was made obsolete because it describes a phenotype rather than a biological goal. To update annotations, consider the biological process terms that describe the growth pattern leading to the colony morphology; for example, in S. cerevisiae a particular colony morphology is indicative of the growth pattern 'invasive growth (sensu Saccharomyces)' (GO:0001403)." * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1114305 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 4721b6 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 1f653ab * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at ef1826 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 11a925a * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 17e61a3 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 3c32d8 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 2e3757 * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at 336f6b * org.geneontology.oboedit.datamodel.history.DelSynonymHistoryItem at d81359 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1de5951 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at b9ea50 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1c64d70 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 5f913 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 236c27 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 191a4b9 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at d5a2ce * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1b387f0 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 1a1c671 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1eb2ec8 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 14c7eb1 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 111a26a * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at bded15 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1181de1 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 51b2d4 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1b38cdf * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at e5af67 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 15eac45 * org.geneontology.oboedit.datamodel.history.AddSynonymHistoryItem at 800269 * org.geneontology.oboedit.datamodel.history.ChangeSynScopeHistoryItem at 1e5044 * Changed name of GO:0007244 from "MAPKKK cascade (mating sensu the Saccharomyces research community)" to "MAPKKK cascade (mating sensu Saccharomyces)" * Changed name of GO:0007245 from "activation of MAPKKK (mating sensu the Saccharomyces research community)" to "activation of MAPKKK (mating sensu Saccharomyces)" * Changed name of GO:0007246 from "activation of MAPKK (mating sensu the Saccharomyces research community)" to "activation of MAPKK (mating sensu Saccharomyces)" * Changed name of GO:0007247 from "activation of MAPK (mating sensu the Saccharomyces research community)" to "activation of MAPK (mating sensu Saccharomyces)" * Changed name of GO:0007248 from "nuclear translocation