From gocvs at genome.Stanford.EDU  Fri Jun  1 21:30:38 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Fri, 1 Jun 2007 21:30:38 -0700 (PDT)
Subject: [go-diff] GO update 06/01/2007
Message-ID: <200706020430.VAA27411@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.332 by 5.334

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0033236
* Created object of type obo:TERM with id GO:0033237
* Created object of type obo:TERM with id GO:0033238
* Created object of type obo:TERM with id GO:0033239
* Created object of type obo:TERM with id GO:0033240
* Created object of type obo:TERM with id GO:0033241
* Created object of type obo:TERM with id GO:0033242
* Created object of type obo:TERM with id GO:0033243
* Created object of type obo:TERM with id GO:0033244
* Created object of type obo:TERM with id GO:0033245
* Created object of type obo:TERM with id GO:0033246
* Created object of type obo:TERM with id GO:0033247
* Created object of type obo:TERM with id GO:0033248
* Created object of type obo:TERM with id GO:0033249
* Created object of type obo:TERM with id GO:0033250
* Created object of type obo:TERM with id GO:0033251
* Created object of type obo:TERM with id GO:0033252
* Created object of type obo:TERM with id GO:0033253
* Created object of type obo:TERM with id GO:0060144
* Created object of type obo:TERM with id GO:0060145
* Created object of type obo:TERM with id GO:0060146
* Created object of type obo:TERM with id GO:0060147
* Created object of type obo:TERM with id GO:0060148
* Created object of type obo:TERM with id GO:0060149
* Created object of type obo:TERM with id GO:0060150
* Populated new object GO:0033236 (macro)
  * Changed name of GO:0033236 from "<new term>" to "11-beta-hydroxysteroid dehydrogenase (NAD+) activity"
  * Set definition of GO:0033236 to "Catalysis of the reaction: an 11-beta-hydroxysteroid + NAD+ = an 11-oxosteroid + NADH + H+."
  * Added definition dbxref PMID:15761036 to GO:0033236
  * Added GO:0033236 to category gosubset_prok
  * Copied GO:0033236 to GO:0003845 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033236
* Populated new object GO:0033237 (macro)
  * Changed name of GO:0033237 from "<new term>" to "11-beta-hydroxysteroid dehydrogenase (NADP+) activity"
  * Set definition of GO:0033237 to "Catalysis of the reaction: an 11-beta-hydroxysteroid + NADP+ = an 11-oxosteroid + NADPH + H+."
  * Added definition dbxref EC:1.1.1.146 to GO:0033237
  * Added general dbxref EC:1.1.1.146 to GO:0033237
  * Added general dbxref MetaCyc:11-BETA-HYDROXYSTEROID-DEHYDROGENASE-RXN to GO:0033237
  * Added GO:0033237 to category gosubset_prok
  * Copied GO:0033237 to GO:0003845 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033237
* Populated new object GO:0033238 (macro)
  * Changed name of GO:0033238 from "<new term>" to "regulation of amine metabolic process"
  * Set definition of GO:0033238 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amines."
  * Added definition dbxref GOC:mah to GO:0033238
  * Added synonym "regulation of amine metabolism" to GO:0033238
  * Changed synonym scope of GO:0033238 from "Related" to "Exact"
  * Copied GO:0033238 to GO:0031323 with type OBO_REL:is_a
  * Copied GO:0033238 to GO:0009308 with type part_of
  * Assigned namespace "biological_process" to GO:0033238
* Populated new object GO:0033239 (macro)
  * Changed name of GO:0033239 from "<new term>" to "negative regulation of amine metabolic process"
  * Set definition of GO:0033239 to "Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways involving amines."
  * Added definition dbxref GOC:mah to GO:0033239
  * Added synonym "negative regulation of amine metabolism" to GO:0033239
  * Changed synonym scope of GO:0033239 from "Related" to "Exact"
  * Copied GO:0033239 to GO:0033238 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033239
* Populated new object GO:0033240 (macro)
  * Changed name of GO:0033240 from "<new term>" to "positive regulation of amine metabolic process"
  * Set definition of GO:0033240 to "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving amines."
  * Added definition dbxref GOC:mah to GO:0033240
  * Added synonym "positive regulation of amine metabolism" to GO:0033240
  * Changed synonym scope of GO:0033240 from "Related" to "Exact"
  * Copied GO:0033240 to GO:0033238 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033240
* Populated new object GO:0033241 (macro)
  * Changed name of GO:0033241 from "<new term>" to "regulation of amine catabolic process"
  * Set definition of GO:0033241 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways leading to the breakdown of amines."
  * Added definition dbxref GOC:mah to GO:0033241
  * Added synonym "regulation of amine breakdown" to GO:0033241
  * Changed synonym scope of GO:0033241 from "Related" to "Exact"
  * Added synonym "regulation of amine catabolism" to GO:0033241
  * Changed synonym scope of GO:0033241 from "Related" to "Exact"
  * Added synonym "regulation of amine degradation" to GO:0033241
  * Changed synonym scope of GO:0033241 from "Related" to "Exact"
  * Copied GO:0033241 to GO:0009310 with type part_of
  * Copied GO:0033241 to GO:0033238 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033241
* Populated new object GO:0033242 (macro)
  * Changed name of GO:0033242 from "<new term>" to "negative regulation of amine catabolic process"
  * Set definition of GO:0033242 to "Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways leading to the breakdown of amines."
  * Added definition dbxref GOC:mah to GO:0033242
  * Added synonym "negative regulation of amine breakdown" to GO:0033242
  * Changed synonym scope of GO:0033242 from "Related" to "Exact"
  * Added synonym "negative regulation of amine catabolism" to GO:0033242
  * Changed synonym scope of GO:0033242 from "Related" to "Exact"
  * Added synonym "negative regulation of amine degradation" to GO:0033242
  * Changed synonym scope of GO:0033242 from "Related" to "Exact"
  * Copied GO:0033242 to GO:0033241 with type OBO_REL:is_a
  * Copied GO:0033242 to GO:0033239 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033242
* Populated new object GO:0033243 (macro)
  * Changed name of GO:0033243 from "<new term>" to "positive regulation of amine catabolic process"
  * Set definition of GO:0033243 to "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways leading to the breakdown of amines."
  * Added definition dbxref GOC:mah to GO:0033243
  * Added synonym "positive regulation of amine breakdown" to GO:0033243
  * Changed synonym scope of GO:0033243 from "Related" to "Exact"
  * Added synonym "positive regulation of amine catabolism" to GO:0033243
  * Changed synonym scope of GO:0033243 from "Related" to "Exact"
  * Added synonym "positive regulation of amine degradation" to GO:0033243
  * Changed synonym scope of GO:0033243 from "Related" to "Exact"
  * Copied GO:0033243 to GO:0033240 with type OBO_REL:is_a
  * Copied GO:0033243 to GO:0033241 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033243
* Populated new object GO:0033244 (macro)
  * Changed name of GO:0033244 from "<new term>" to "regulation of penicillin metabolic process"
  * Set definition of GO:0033244 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving any antibiotic that contains the condensed beta-lactamthiazolidine ring system."
  * Added definition dbxref GOC:mah to GO:0033244
  * Added synonym "regulation of penicillin metabolism" to GO:0033244
  * Changed synonym scope of GO:0033244 from "Related" to "Exact"
  * Copied GO:0033244 to GO:0042316 with type part_of
  * Copied GO:0033244 to GO:0033238 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033244
* Populated new object GO:0033245 (macro)
  * Changed name of GO:0033245 from "<new term>" to "negative regulation of penicillin metabolic process"
  * Set definition of GO:0033245 to "Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways involving any antibiotic that contains the condensed beta-lactamthiazolidine ring system."
  * Added definition dbxref GOC:mah to GO:0033245
  * Added synonym "negative regulation of penicillin metabolism" to GO:0033245
  * Changed synonym scope of GO:0033245 from "Related" to "Exact"
  * Copied GO:0033245 to GO:0033244 with type OBO_REL:is_a
  * Copied GO:0033245 to GO:0033239 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033245
* Populated new object GO:0033246 (macro)
  * Changed name of GO:0033246 from "<new term>" to "positive regulation of penicillin metabolic process"
  * Set definition of GO:0033246 to "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving any antibiotic that contains the condensed beta-lactamthiazolidine ring system."
  * Added definition dbxref GOC:mah to GO:0033246
  * Added synonym "positive regulation of penicillin metabolism" to GO:0033246
  * Changed synonym scope of GO:0033246 from "Related" to "Exact"
  * Copied GO:0033246 to GO:0033244 with type OBO_REL:is_a
  * Copied GO:0033246 to GO:0033240 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033246
* Populated new object GO:0033247 (macro)
  * Changed name of GO:0033247 from "<new term>" to "regulation of penicillin catabolic process"
  * Set definition of GO:0033247 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways leading to the breakdown of any antibiotic that contains the condensed beta-lactamthiazolidine ring system."
  * Added definition dbxref GOC:mah to GO:0033247
  * Added synonym "regulation of penicillin breakdown" to GO:0033247
  * Changed synonym scope of GO:0033247 from "Related" to "Exact"
  * Added synonym "regulation of penicillin catabolism" to GO:0033247
  * Changed synonym scope of GO:0033247 from "Related" to "Exact"
  * Added synonym "regulation of penicillin degradation" to GO:0033247
  * Changed synonym scope of GO:0033247 from "Related" to "Exact"
  * Copied GO:0033247 to GO:0033244 with type OBO_REL:is_a
  * Copied GO:0033247 to GO:0042317 with type part_of
  * Assigned namespace "biological_process" to GO:0033247
* Populated new object GO:0033248 (macro)
  * Changed name of GO:0033248 from "<new term>" to "negative regulation of penicillin catabolic process"
  * Set definition of GO:0033248 to "Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways leading to the breakdown of any antibiotic that contains the condensed beta-lactamthiazolidine ring system."
  * Added definition dbxref GOC:mah to GO:0033248
  * Added synonym "negative regulation of penicillin breakdown" to GO:0033248
  * Changed synonym scope of GO:0033248 from "Related" to "Exact"
  * Added synonym "negative regulation of penicillin catabolism" to GO:0033248
  * Changed synonym scope of GO:0033248 from "Related" to "Exact"
  * Added synonym "negative regulation of penicillin degradation" to GO:0033248
  * Changed synonym scope of GO:0033248 from "Related" to "Exact"
  * Copied GO:0033248 to GO:0033247 with type OBO_REL:is_a
  * Copied GO:0033248 to GO:0033245 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033248
* Populated new object GO:0033249 (macro)
  * Changed name of GO:0033249 from "<new term>" to "positive regulation of penicillin catabolic process"
  * Set definition of GO:0033249 to "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways leading to the breakdown of any antibiotic that contains the condensed beta-lactamthiazolidine ring system."
  * Added definition dbxref GOC:mah to GO:0033249
  * Added synonym "positive regulation of penicillin breakdown" to GO:0033249
  * Changed synonym scope of GO:0033249 from "Related" to "Exact"
  * Added synonym "positive regulation of penicillin catabolism" to GO:0033249
  * Changed synonym scope of GO:0033249 from "Related" to "Exact"
  * Added synonym "positive regulation of penicillin degradation" to GO:0033249
  * Changed synonym scope of GO:0033249 from "Related" to "Exact"
  * Copied GO:0033249 to GO:0033247 with type OBO_REL:is_a
  * Copied GO:0033249 to GO:0033246 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033249
* Populated new object GO:0033250 (macro)
  * Changed name of GO:0033250 from "<new term>" to "penicillinase activity"
  * Set definition of GO:0033250 to "Catalysis of the reaction: a penicillin + H2O = a substituted beta-amino acid derivative of the penicillin."
  * Added definition dbxref GOC:mlg to GO:0033250
  * Copied GO:0033250 to GO:0008800 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033250
* Populated new object GO:0033251 (macro)
  * Changed name of GO:0033251 from "<new term>" to "cephalosporinase activity"
  * Set definition of GO:0033251 to "Catalysis of the reaction: a cephalosporin + H2O = a substituted beta-amino acid derivative of the cephalosporin."
  * Added definition dbxref GOC:mlg to GO:0033251
  * Copied GO:0033251 to GO:0008800 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033251
* Populated new object GO:0033252 (macro)
  * Changed name of GO:0033252 from "<new term>" to "regulation of beta-lactamase activity"
  * Set definition of GO:0033252 to "Any process that modulates the frequency, rate or extent of nuclease activity, the hydrolysis of a beta-lactam to yield a substituted beta-amino acid."
  * Added definition dbxref GOC:mah to GO:0033252
  * Copied GO:0033252 to GO:0051336 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033252
* Populated new object GO:0033253 (macro)
  * Changed name of GO:0033253 from "<new term>" to "regulation of penicillinase activity"
  * Set definition of GO:0033253 to "Any process that modulates the frequency, rate or extent of nuclease activity, the hydrolysis of a penicillin to yield a substituted beta-amino acid derivative."
  * Added definition dbxref GOC:mah to GO:0033253
  * Copied GO:0033253 to GO:0033252 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033253
* Populated new object GO:0060144 (macro)
  * Changed name of GO:0060144 from "<new term>" to "host cellular processes involved in virus induced gene silencing"
  * Set definition of GO:0060144 to "The cellular processes occuring in the host cell that contribute to the process of posttranscriptional gene inactivation ('silencing') both of viral gene(s), and host gene(s) homologous to the viral genes."
  * Added definition dbxref GOC:dph to GO:0060144
  * Copied GO:0060144 to GO:0009616 with type part_of
  * Copied GO:0060144 to GO:0009987 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060144
* Populated new object GO:0060145 (macro)
  * Changed name of GO:0060145 from "<new term>" to "viral gene silencing in virus induced gene silencing"
  * Set definition of GO:0060145 to "The posttranscriptional gene silencing of viral genes after viral infection."
  * Added definition dbxref GOC:dph to GO:0060145
  * Copied GO:0060145 to GO:0016441 with type OBO_REL:is_a
  * Copied GO:0060145 to GO:0009616 with type part_of
  * Assigned namespace "biological_process" to GO:0060145
* Populated new object GO:0060146 (macro)
  * Changed name of GO:0060146 from "<new term>" to "host gene silencing in virus induced gene silencing"
  * Set definition of GO:0060146 to "The posttranscriptional gene silencing of host genes that are homologous to viral genes after viral infection."
  * Added definition dbxref GOC:dph to GO:0060146
  * Copied GO:0060146 to GO:0016441 with type OBO_REL:is_a
  * Copied GO:0060146 to GO:0009616 with type part_of
  * Assigned namespace "biological_process" to GO:0060146
* Populated new object GO:0060147 (macro)
  * Changed name of GO:0060147 from "<new term>" to "regulation of posttranscriptional gene silencing"
  * Set definition of GO:0060147 to "Any process that that modulates the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism."
  * Added definition dbxref GOC:dph to GO:0060147
  * Copied GO:0060147 to GO:0016441 with type part_of
  * Copied GO:0060147 to GO:0050789 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060147
* Populated new object GO:0060148 (macro)
  * Changed name of GO:0060148 from "<new term>" to "positive regulation of posttranscriptional gene silencing"
  * Set definition of GO:0060148 to "Any process that that increases the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism."
  * Added definition dbxref GOC:dph to GO:0060148
  * Copied GO:0060148 to GO:0060147 with type OBO_REL:is_a
  * Copied GO:0060148 to GO:0048518 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060148
* Populated new object GO:0060149 (macro)
  * Changed name of GO:0060149 from "<new term>" to "negative regulation of posttranscriptional gene silencing"
  * Set definition of GO:0060149 to "Any process that that decreases the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism."
  * Added definition dbxref GOC:dph to GO:0060149
  * Copied GO:0060149 to GO:0060147 with type OBO_REL:is_a
  * Copied GO:0060149 to GO:0048519 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060149
* Populated new object GO:0060150 (macro)
  * Changed name of GO:0060150 from "<new term>" to "viral triggering of virus induced gene silencing"
  * Set definition of GO:0060150 to "Any process that that increases the frequency, rate or extent of the inactivation of gene expression of both viral genes and host homologues to those genes by a posttranscriptional mechanism in a virally infected cell."
  * Added definition dbxref GOC:dph to GO:0060150
  * Copied GO:0060150 to GO:0009616 with type part_of
  * Copied GO:0060150 to GO:0060148 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060150
* Changed definition of GO:0003845 from "Catalysis of the reaction: an 11-beta-hydroxysteroid + NADP+ = an 11-oxosteroid + NADPH + H+." to "Catalysis of the reaction: an 11-beta-hydroxysteroid + NAD(P)+ = an 11-oxosteroid + NAD(P)H + H+."
* Added definition dbxref PMID:15761036 to GO:0003845
* Deleted general dbxref EC:1.1.1.146 from GO:0003845
* Deleted general dbxref MetaCyc:11-BETA-HYDROXYSTEROID-DEHYDROGENASE-RXN from GO:0003845
* Copied GO:0004240 to GO:0009003 with type OBO_REL:is_a
* Deleted GO:0006521 --OBO_REL:is_a--> GO:0031323
* Copied GO:0006521 to GO:0033238 with type OBO_REL:is_a
* Changed definition of GO:0007617 from "The actions or reactions of individuals for the purpose of mating, or sexual reproduction resulting in the formation of zygotes." to "The behavioral interactions between organisms for the
purpose of mating, or sexual reproduction resulting in the formation of
zygotes."
* Added definition dbxref GOC:dph to GO:0007617
* Changed definition of GO:0007619 from "The actions or reactions of individuals for the purpose of attracting a sexual partner." to "The behavioral interactions between organisms for the purpose of attracting sexual partners."
* Added definition dbxref GOC:dph to GO:0007619
* Deleted GO:0007619 --OBO_REL:is_a--> GO:0033057
* Deleted GO:0008049 --OBO_REL:is_a--> GO:0007619
* Copied GO:0008049 to GO:0033057 with type OBO_REL:is_a
* Copied GO:0008049 to GO:0007619 with type part_of
* Deleted GO:0008050 --OBO_REL:is_a--> GO:0007619
* Copied GO:0008050 to GO:0033057 with type OBO_REL:is_a
* Copied GO:0008050 to GO:0007619 with type part_of
* Deleted GO:0009616 --OBO_REL:is_a--> GO:0016441
* Changed definition of GO:0032113 from "Any process that modulates the frequency, rate or extent of hydrolase activity, the catalysis of the hydrolysis of phosphate from a carbohydrate phosphate." to "Any process that modulates the frequency, rate or extent of carbohydrate phosphatase activity, the catalysis of the hydrolysis of phosphate from a carbohydrate phosphate."
* Added synonym "diphosphoinositol-pentakisphosphate 4-kinase activity" to GO:0033199
* Changed synonym scope of GO:0033199 from "Related" to "Exact"
* Added synonym "diphosphoinositol-pentakisphosphate 5-kinase activity" to GO:0033200
* Changed synonym scope of GO:0033200 from "Related" to "Exact"
* Changed definition of GO:0043666 from "Any process that modulates the frequency, rate or extent of hydrolase activity, the catalysis of the hydrolysis of phosphate from a phosphoprotein." to "Any process that modulates the frequency, rate or extent of phosphoprotein phosphatase activity, the catalysis of the hydrolysis of phosphate from a phosphoprotein."
* Copied GO:0045763 to GO:0033239 with type OBO_REL:is_a
* Copied GO:0045764 to GO:0033240 with type OBO_REL:is_a
* Changed synonym scope of GO:0051091 from "Narrow" to "Exact"
* Changed definition of GO:0052547 from "Any process that modulates the frequency, rate or extent of nuclease activity, the hydrolysis of peptide linkages within nucleic acids." to "Any process that modulates the frequency, rate or extent of peptidase activity, the hydrolysis of peptide linkages within nucleic acids."


From gocvs at genome.Stanford.EDU  Mon Jun  4 21:30:41 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Mon, 4 Jun 2007 21:30:41 -0700 (PDT)
Subject: [go-diff] GO update 06/04/2007
Message-ID: <200706050430.VAA28212@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.334 by 5.335

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0043733
* Created object of type obo:TERM with id GO:0043734
* Populated new object GO:0043733 (macro)
  * Changed name of GO:0043733 from "<new term>" to "DNA-3-methyladenine glycosylase III activity"
  * Set definition of GO:0043733 to "Catalysis of the hydrolysis of alkylated DNA; recognizes and removes alkylated purines and pyrimidines by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic or apyrimidinic (AP) site. This enzyme is unable to excise N-7-methylpurines or oxidized bases, such as hypoxanthine."
  * Added definition dbxref IMG:00576 to GO:0043733
  * Added definition dbxref PMID:10777493 to GO:0043733
  * Added definition dbxref PMID:14517230 to GO:0043733
  * Added general dbxref EC:3.2.2.- to GO:0043733
  * Added synonym "Mag III" to GO:0043733
  * Changed synonym scope of GO:0043733 from "Related" to "Narrow"
  * Added synonym "MagIII" to GO:0043733
  * Changed synonym scope of GO:0043733 from "Related" to "Narrow"
  * Copied GO:0043733 to GO:0003905 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043733
* Populated new object GO:0043734 (macro)
  * Changed name of GO:0043734 from "<new term>" to "DNA-N1-methyladenine dioxygenase activity"
  * Set definition of GO:0043734 to "Catalysis of the oxidative demethylation of N1-methyladenine and N3-methylcytosine in DNA and RNA, with concomitant decarboxylation of 2-oxoglutarate and releases oxidized methylgroup on N1-methyladenine and N3-methylcytosine as formaldehyde."
  * Added definition dbxref IMG:00579 to GO:0043734
  * Added definition dbxref UniProt:P05050 to GO:0043734
  * Added general dbxref EC:1.14.11.- to GO:0043734
  * Added synonym "AlkB" to GO:0043734
  * Changed synonym scope of GO:0043734 from "Related" to "Narrow"
  * Added synonym "alkB" to GO:0043734
  * Changed synonym scope of GO:0043734 from "Related" to "Narrow"
  * Added synonym "alpha-ketoglutarate-dependent dioxygenase" to GO:0043734
  * Changed synonym scope of GO:0043734 from "Related" to "Narrow"
  * Copied GO:0043734 to GO:0016706 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043734
* Deleted GO:0004768 --OBO_REL:is_a--> GO:0016215
* Copied GO:0004768 to GO:0016717 with type OBO_REL:is_a
* Changed synonym scope of GO:0051091 from "Narrow" to "Exact"


From gocvs at genome.Stanford.EDU  Tue Jun  5 21:30:41 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Tue, 5 Jun 2007 21:30:41 -0700 (PDT)
Subject: [go-diff] GO update 06/05/2007
Message-ID: <200706060430.VAA27257@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.335 by 5.337

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0043735
* Created object of type obo:TERM with id GO:0043736
* Created object of type obo:TERM with id GO:0043737
* Created object of type obo:TERM with id GO:0043738
* Created object of type obo:TERM with id GO:0043739
* Created object of type obo:TERM with id GO:0043740
* Created object of type obo:TERM with id GO:0060151
* Created object of type obo:TERM with id GO:0060152
* Populated new object GO:0043735 (macro)
  * Changed name of GO:0043735 from "<new term>" to "delta-9 acyl-phospholipid desaturase activity"
  * Added synonym "MpgII" to GO:0043735
  * Changed synonym scope of GO:0043735 from "Related" to "Narrow"
  * Copied GO:0043735 to GO:0016717 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043735
* Populated new object GO:0043736 (macro)
  * Changed name of GO:0043736 from "<new term>" to "DNA-3-methyladenine glycosylase IV activity"
  * Set definition of GO:0043736 to "Catalysis of the hydrolysis of alkylated DNA; recognizes and removes both N-3- and N-7-methyl purines by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic or apyrimidinic (AP) site."
  * Added definition dbxref IMG:00578 to GO:0043736
  * Added definition dbxref PMID:10375529 to GO:0043736
  * Added synonym "Mpg II" to GO:0043736
  * Changed synonym scope of GO:0043736 from "Related" to "Narrow"
  * Added synonym "MpgII" to GO:0043736
  * Changed synonym scope of GO:0043736 from "Related" to "Narrow"
  * Copied GO:0043736 to GO:0003905 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043736
* Populated new object GO:0043737 (macro)
  * Changed name of GO:0043737 from "<new term>" to "deoxyribonuclease V activity"
  * Set definition of GO:0043737 to "Catalysis of the endonucleolytic cleavage at apurinic or apyrimidinic sites to products with a 5'-phosphate."
  * Added definition dbxref EC:3.1.21.7 to GO:0043737
  * Added general dbxref EC:3.1.21.7 to GO:0043737
  * Added synonym "DNase V" to GO:0043737
  * Changed synonym scope of GO:0043737 from "Related" to "Broad"
  * Added synonym "endodeoxyribonuclease V" to GO:0043737
  * Changed synonym scope of GO:0043737 from "Related" to "Exact"
  * Added synonym "endonuclease V" to GO:0043737
  * Changed synonym scope of GO:0043737 from "Related" to "Broad"
  * Copied GO:0043737 to GO:0016888 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043737
* Populated new object GO:0043738 (macro)
  * Changed name of GO:0043738 from "<new term>" to "F420H2 dehydrogenase activity"
  * Set definition of GO:0043738 to "Catalysis of the reaction: methanophenazine + reduced cofactor F420 <=> dihydromethanophenazine + cofactor F420."
  * Added definition dbxref MetaCyc:CPLX-7105 to GO:0043738
  * Added general dbxref EC:1.-.-.- to GO:0043738
  * Added general dbxref MetaCyc:CPLX-7105 to GO:0043738
  * Copied GO:0043738 to GO:0016491 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043738
* Populated new object GO:0043739 (macro)
  * Changed name of GO:0043739 from "<new term>" to "G/U mismatch-specific uracil-DNA glycosylase activity"
  * Set definition of GO:0043739 to "Catalysis of the removal of uracil from a U*G mispair by the cleavage the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free uracil and leaves an apyrimidinic (AP) site."
  * Added definition dbxref IMG:00570 to GO:0043739
  * Added definition dbxref SP:O59825 to GO:0043739
  * Added synonym "GU mismatch-specific uracil-DNA glycosylase activity" to GO:0043739
  * Changed synonym scope of GO:0043739 from "Related" to "Exact"
  * Added synonym "MUG" to GO:0043739
  * Changed synonym scope of GO:0043739 from "Related" to "Exact"
  * Added synonym "uracil mismatch repair protein" to GO:0043739
  * Changed synonym scope of GO:0043739 from "Related" to "Broad"
  * Copied GO:0043739 to GO:0008263 with type OBO_REL:is_a
  * Copied GO:0043739 to GO:0004844 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043739
* Populated new object GO:0043740 (macro)
  * Changed name of GO:0043740 from "<new term>" to "GTP cyclohydrolase IIa activity"
  * Set definition of GO:0043740 to "Catalysis of the reaction: GTP + 3 H2O = 2-amino-5-formylamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one + 2 phosphate."
  * Added definition dbxref EC:3.5.4.29 to GO:0043740
  * Added general dbxref EC:3.5.4.29 to GO:0043740
  * Added synonym "GTP 8,9-hydrolase (phosphate-forming)" to GO:0043740
  * Changed synonym scope of GO:0043740 from "Related" to "Exact"
  * Copied GO:0043740 to GO:0003933 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043740
* Populated new object GO:0060151 (macro)
  * Changed name of GO:0060151 from "<new term>" to "peroxisome localization"
  * Set definition of GO:0060151 to "The processes by which a peroxisome is transported to, and/or maintained in, a specific location. A peroxisome is a small membrane-bounded organelle that uses dioxygen (O2) to oxidize organic
molecules."
  * Added definition dbxref GOC:dph to GO:0060151
  * Added definition dbxref PMID:16449325 to GO:0060151
  * Copied GO:0060151 to GO:0051640 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060151
* Populated new object GO:0060152 (macro)
  * Changed name of GO:0060152 from "<new term>" to "microtubule-based peroxisome localization"
  * Set definition of GO:0060152 to "The microtubule-based process by which a peroxisome is transported to,
and/or maintained in, a specific location. A peroxisome is a small membrane-bounded organelle that uses dioxygen (O2) to oxidize organic
molecules."
  * Added definition dbxref GOC:dph to GO:0060152
  * Added definition dbxref PMID:16449325 to GO:0060152
  * Copied GO:0060152 to GO:0007017 with type OBO_REL:is_a
  * Copied GO:0060152 to GO:0060151 with type part_of
  * Assigned namespace "biological_process" to GO:0060152
* Deleted GO:0000747 --OBO_REL:is_a--> GO:0022413
* Deleted GO:0000748 --OBO_REL:is_a--> GO:0022413
* Copied GO:0000756 to GO:0007154 with type OBO_REL:is_a
* Added synonym "eukaryotic ribosomal LSU" to GO:0005842
* Added synonym "eukaryotic ribosomal SSU" to GO:0005843
* Added synonym "host adhesion" to GO:0044406
* Changed synonym scope of GO:0044406 from "Related" to "Exact"
* Changed name of GO:0046481 from "UDP-galactose:MGDG galactosyltransferase activity" to "digalactosyldiacylglycerol synthase"
* Changed definition of GO:0046481 from "Catalysis of the reaction: 3-beta-D-galactosyl-1,2-diacylglycerol + UDP-galactose = alpha-D-galactosyl-beta-D-galactosyldiacylglycerol + UDP." to "Catalysis of the reaction: UDP-galactose + 3-(beta-D-galactosyl)-1,2-diacyl-sn-glycerol = UDP + 3-[alpha-D-galactosyl-(1->6)-beta-D-galactosyl]-1,2-diacyl-sn-glycerol."
* Added definition dbxref EC:2.4.1.241 to GO:0046481
* Added general dbxref EC:2.4.1.241 to GO:0046481
* Deleted synonym "digalactosyldiacylglycerol synthase 2" from GO:0046481
* Added synonym "DGD1" to GO:0046481
* Changed synonym scope of GO:0046481 from "Related" to "Narrow"
* Added synonym "DGDG synthase" to GO:0046481
* Changed synonym scope of GO:0046481 from "Related" to "Exact"
* Added synonym "UDP-galactose-dependent DGDG synthase" to GO:0046481
* Changed synonym scope of GO:0046481 from "Related" to "Exact"
* Added synonym "UDP-galactose-dependent digalactosyldiacylglycerol synthase" to GO:0046481
* Changed synonym scope of GO:0046481 from "Related" to "Exact"
* Added synonym "UDP-galactose:MGDG galactosyltransferase activity" to GO:0046481
* Changed synonym scope of GO:0046481 from "Related" to "Exact"
* Changed synonym scope of GO:0051091 from "Narrow" to "Exact"


From gocvs at genome.Stanford.EDU  Wed Jun  6 21:30:40 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Wed, 6 Jun 2007 21:30:40 -0700 (PDT)
Subject: [go-diff] GO update 06/06/2007
Message-ID: <200706070430.VAA02064@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.337 by 5.340

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0033254
* Created object of type obo:TERM with id GO:0033255
* Created object of type obo:TERM with id GO:0033256
* Created object of type obo:TERM with id GO:0033257
* Created object of type obo:TERM with id GO:0033258
* Created object of type obo:TERM with id GO:0033259
* Created object of type obo:TERM with id GO:0033260
* Created object of type obo:TERM with id GO:0033261
* Created object of type obo:TERM with id GO:0033262
* Created object of type obo:TERM with id GO:0060153
* Created object of type obo:TERM with id GO:0060154
* Populated new object GO:0033254 (macro)
  * Changed name of GO:0033254 from "<new term>" to "vacuolar transporter chaperone complex"
  * Set definition of GO:0033254 to "A protein complex that contains four related proteins that have been implicated in several membrane-related processes, such as sorting of H+-translocating ATPases, endocytosis, ER-Golgi trafficking, vacuole fusion, vacuolar polyphosphate homeostasis and the microautophagic scission of vesicles into the vacuolar lumen. The complex is enriched at the vacuolar membrane, but also found in other cellular compartments, including the ER and the cell periphery. In Saccharomyces, the subunits are Vtc1p, Vtc2p, Vtc3p and Vtc4p."
  * Added definition dbxref PMID:11823419 to GO:0033254
  * Added definition dbxref PMID:17079729 to GO:0033254
  * Added synonym "VTC complex" to GO:0033254
  * Changed synonym scope of GO:0033254 from "Related" to "Exact"
  * Copied GO:0033254 to GO:0044444 with type OBO_REL:is_a
  * Copied GO:0033254 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033254
* Populated new object GO:0033255 (macro)
  * Changed name of GO:0033255 from "<new term>" to "SAS acetyltransferase complex"
  * Set definition of GO:0033255 to "A protein complex that possesses histone acetyltransferase activity and links histone acetylation to the assembly of transcriptionally silent chromatin. In vitro, the complex acetylates lysine 16 of histone H4 and lysine 14 of histone H3, although the latter may not be relevant in vivo. The complex contains a catalytic subunit and at least two other subunits; in Saccharomyces, the catalytic subunit is Sas2p and additional subunits are Sas4p and Sas5p."
  * Added definition dbxref PMID:11731480 to GO:0033255
  * Added definition dbxref PMID:12626510 to GO:0033255
  * Added definition dbxref PMID:15788653 to GO:0033255
  * Added synonym "SAS-I complex" to GO:0033255
  * Changed synonym scope of GO:0033255 from "Related" to "Exact"
  * Copied GO:0033255 to GO:0032777 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033255
* Populated new object GO:0033256 (macro)
  * Changed name of GO:0033256 from "<new term>" to "I-kappaB/NF-kappaB complex"
  * Set definition of GO:0033256 to "A protein complex containing an I-kappaB protein and one or more copies of an NF-kappaB protein; mediates regulation of NF-kappaB activity by I-kappaB."
  * Added definition dbxref GOC:mah to GO:0033256
  * Added definition dbxref PMID:9407099 to GO:0033256
  * Copied GO:0033256 to GO:0043234 with type OBO_REL:is_a
  * Copied GO:0033256 to GO:0044424 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033256
* Populated new object GO:0033257 (macro)
  * Changed name of GO:0033257 from "<new term>" to "Bcl3/NF-kappaB2 complex"
  * Set definition of GO:0033257 to "A protein complex containing one Bcl protein and one or more copies of NF-kappaB2; formation of complexes of different stoichiometry depends on the Bcl3:NF-kappaB2 ratio, and allow Bcl3 to exert different regulatory effects on NF-kappaB2-dependent transcription."
  * Added definition dbxref GOC:mah to GO:0033257
  * Added definition dbxref PMID:9407099 to GO:0033257
  * Added synonym "Bcl3-NFKB2 complex" to GO:0033257
  * Added synonym "Bcl3-p52 complex" to GO:0033257
  * Changed synonym scope of GO:0033257 from "Related" to "Exact"
  * Copied GO:0033257 to GO:0033256 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033257
* Populated new object GO:0033258 (macro)
  * Changed name of GO:0033258 from "<new term>" to "plastid DNA metabolic process"
  * Set definition of GO:0033258 to "The chemical reactions and pathways involving plastid DNA."
  * Added definition dbxref GOC:mah to GO:0033258
  * Added synonym "plastid DNA metabolism" to GO:0033258
  * Changed synonym scope of GO:0033258 from "Related" to "Exact"
  * Copied GO:0033258 to GO:0009657 with type part_of
  * Copied GO:0033258 to GO:0006259 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033258
* Populated new object GO:0033259 (macro)
  * Changed name of GO:0033259 from "<new term>" to "plastid DNA replication"
  * Set definition of GO:0033259 to "The process whereby new strands of DNA are synthesized in a plastid."
  * Added definition dbxref GOC:mah to GO:0033259
  * Added synonym "plastid DNA synthesis" to GO:0033259
  * Added synonym "replication of plastid DNA" to GO:0033259
  * Changed synonym scope of GO:0033259 from "Related" to "Exact"
  * Copied GO:0033259 to GO:0033258 with type OBO_REL:is_a
  * Copied GO:0033259 to GO:0006261 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033259
* Populated new object GO:0033260 (macro)
  * Changed name of GO:0033260 from "<new term>" to "DNA replication during S phase"
  * Set definition of GO:0033260 to "The process whereby new strands of genomic DNA are synthesized, using parental DNA as a template for DNA-dependent DNA polymerases, during progression through S phase of the cell cycle."
  * Added definition dbxref GOC:mah to GO:0033260
  * Copied GO:0033260 to GO:0006261 with type OBO_REL:is_a
  * Copied GO:0033260 to GO:0051320 with type part_of
  * Assigned namespace "biological_process" to GO:0033260
* Populated new object GO:0033261 (macro)
  * Changed name of GO:0033261 from "<new term>" to "regulation of progression through S phase"
  * Set definition of GO:0033261 to "A cell cycle process that modulates the frequency, rate or extent of the progression through the S phase of the cell cycle."
  * Added definition dbxref GOC:mah to GO:0033261
  * Copied GO:0033261 to GO:0000074 with type OBO_REL:is_a
  * Copied GO:0033261 to GO:0051320 with type part_of
  * Assigned namespace "biological_process" to GO:0033261
* Populated new object GO:0033262 (macro)
  * Changed name of GO:0033262 from "<new term>" to "regulation of DNA replication during S phase"
  * Set definition of GO:0033262 to "Any process that modulates the frequency, rate or extent of DNA replication during progression through S phase of the cell cycle."
  * Added definition dbxref GOC:mah to GO:0033262
  * Copied GO:0033262 to GO:0033261 with type OBO_REL:is_a
  * Copied GO:0033262 to GO:0033260 with type part_of
  * Copied GO:0033262 to GO:0006275 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033262
* Populated new object GO:0060153 (macro)
  * Changed name of GO:0060153 from "<new term>" to "viral process regulating host cell cycle"
  * Set definition of GO:0060153 to "Any viral process that modulates the rate or extent of progression through the cell cycle."
  * Added definition dbxref GOC:dph to GO:0060153
  * Copied GO:0060153 to GO:0019055 with type part_of
  * Copied GO:0060153 to GO:0000074 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060153
* Populated new object GO:0060154 (macro)
  * Changed name of GO:0060154 from "<new term>" to "cellular process regulating host cell cycle in response to virus"
  * Set definition of GO:0060154 to "Any cellular process that modulates the rate or extent of progression through the cell cycle in response to a virus."
  * Added definition dbxref GOC:dph to GO:0060154
  * Copied GO:0060154 to GO:0009615 with type OBO_REL:is_a
  * Copied GO:0060154 to GO:0000074 with type OBO_REL:is_a
  * Copied GO:0060154 to GO:0019055 with type part_of
  * Assigned namespace "biological_process" to GO:0060154
* Deleted GO:0000050 --OBO_REL:is_a--> GO:0044237
* Added synonym "inner endospore membrane" to GO:0005886
* Changed synonym scope of GO:0005886 from "Related" to "Narrow"
* Changed definition of GO:0007090 from "A cell cycle process that modulates the frequency, rate or extent of the progression through the S phase of mitotic cell cycle." to "A cell cycle process that modulates the frequency, rate or extent of the progression through the S phase of the mitotic cell cycle."
* Deleted GO:0007090 --OBO_REL:is_a--> GO:0050789
* Deleted GO:0007090 --OBO_REL:is_a--> GO:0022402
* Copied GO:0007090 to GO:0033261 with type OBO_REL:is_a
* Deleted GO:0009912 --OBO_REL:is_a--> GO:0045165
* Deleted GO:0010432 --OBO_REL:is_a--> GO:0048856
* Deleted GO:0017117 --OBO_REL:is_a--> GO:0043234
* Changed definition of GO:0019055 from "Viral processes that modulate the rate of the host cell cycle to facilitate virus replication." to "Interactions, directly with the host cell macromolecular machinery, to allow a virus to modulate the rate of the host cell cycle to facilitate virus replication."
* Added definition dbxref GOC:dph to GO:0019055
* Deleted GO:0019055 --OBO_REL:is_a--> GO:0000074
* Deleted GO:0032247 --OBO_REL:is_a--> GO:0032244
* Copied GO:0032248 to GO:0032244 with type OBO_REL:is_a
* Deleted GO:0033234 --part_of--> GO:0016925
* Deleted GO:0033235 --part_of--> GO:0016925
* Changed name of GO:0045977 from "positive regulation of mitotic cell cycle, embryonic" to "positive regulation of progression through embryonic mitotic cell cycle"
* Added synonym "positive regulation of mitotic cell cycle, embryonic" to GO:0045977
* Changed synonym scope of GO:0045977 from "Related" to "Exact"
* Changed synonym scope of GO:0051091 from "Narrow" to "Exact"
* Deleted GO:0051256 --part_of--> GO:0051225
* Deleted GO:0051257 --part_of--> GO:0051225


From gocvs at genome.Stanford.EDU  Thu Jun  7 21:30:39 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Thu, 7 Jun 2007 21:30:39 -0700 (PDT)
Subject: [go-diff] GO update 06/07/2007
Message-ID: <200706080430.VAA01076@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.340 by 5.342

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0033263
* Created object of type obo:TERM with id GO:0033264
* Created object of type obo:TERM with id GO:0033265
* Created object of type obo:TERM with id GO:0033266
* Created object of type obo:TERM with id GO:0033267
* Created object of type obo:TERM with id GO:0033268
* Created object of type obo:TERM with id GO:0033269
* Created object of type obo:TERM with id GO:0033270
* Created object of type obo:TERM with id GO:0033271
* Created object of type obo:TERM with id GO:0033272
* Created object of type obo:TERM with id GO:0033273
* Created object of type obo:TERM with id GO:0033274
* Created object of type obo:TERM with id GO:0043741
* Created object of type obo:TERM with id GO:0043742
* Created object of type obo:TERM with id GO:0043743
* Populated new object GO:0033263 (macro)
  * Changed name of GO:0033263 from "<new term>" to "CORVET complex"
  * Set definition of GO:0033263 to "A multimeric protein complex that acts as an endosomal tethering complex (CORVET = class C core vacuole/endosome tethering) by cooperating with Rab GTPases to capture endosomal vesicles and trap them prior to the action of SNAREs; the complex is involved in endo-lysosomal biogenesis and required for transport between endosome and vacuole. The Saccharomyces cerevisiae complex contains Vps8p, Vps3p, Pep5p, Vps16p, Pep3p, and Vps33p."
  * Added definition dbxref PMID:17488625 to GO:0033263
  * Copied GO:0033263 to GO:0044440 with type OBO_REL:is_a
  * Copied GO:0033263 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033263
* Populated new object GO:0033264 (macro)
  * Changed name of GO:0033264 from "<new term>" to "bontoxilysin activity"
  * Set definition of GO:0033264 to "Catalysis of limited hydrolysis of proteins of the neuroexocytosis apparatus, synaptobrevins, SNAP25 or syntaxin. No detected action on small molecule substrates."
  * Added definition dbxref EC:3.4.24.69 to GO:0033264
  * Added general dbxref EC:3.4.24.69 to GO:0033264
  * Added general dbxref MetaCyc:3.4.24.69-RXN to GO:0033264
  * Added GO:0033264 to category gosubset_prok
  * Added synonym "botulinum neurotoxin activity" to GO:0033264
  * Changed synonym scope of GO:0033264 from "Related" to "Exact"
  * Copied GO:0033264 to GO:0004222 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033264
* Populated new object GO:0033265 (macro)
  * Changed name of GO:0033265 from "<new term>" to "choline binding"
  * Set definition of GO:0033265 to "Interacting selectively with choline, the amine 2-hydroxy-N,N,N-trimethylethanaminium."
  * Added definition dbxref ChEBI:15354 to GO:0033265
  * Added definition dbxref GOC:mlg to GO:0033265
  * Copied GO:0033265 to GO:0043176 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033265
* Populated new object GO:0033266 (macro)
  * Changed name of GO:0033266 from "<new term>" to "choline-transporting ATPase activity"
  * Set definition of GO:0033266 to "Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the transport of choline across a membrane."
  * Added definition dbxref GOC:mlg to GO:0033266
  * Copied GO:0033266 to GO:0031263 with type OBO_REL:is_a
  * Copied GO:0033266 to GO:0015220 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033266
* Populated new object GO:0033267 (macro)
  * Changed name of GO:0033267 from "<new term>" to "axon part"
  * Set definition of GO:0033267 to "A cell projection part that is part of an axon."
  * Added definition dbxref GOC:mh to GO:0033267
  * Copied GO:0033267 to GO:0030424 with type part_of
  * Copied GO:0033267 to GO:0044463 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033267
* Populated new object GO:0033268 (macro)
  * Changed name of GO:0033268 from "<new term>" to "node of Ranvier"
  * Set definition of GO:0033268 to "An axon part that is a gap in the myelin where voltage-gated sodium channels cluster and saltatory conduction is executed."
  * Added definition dbxref GOC:mh to GO:0033268
  * Copied GO:0033268 to GO:0033267 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033268
* Populated new object GO:0033269 (macro)
  * Changed name of GO:0033269 from "<new term>" to "internode region of axon"
  * Set definition of GO:0033269 to "An axon part that is located between the nodes of Ranvier and surrounded by compact myelin sheath."
  * Added definition dbxref GOC:mah to GO:0033269
  * Added definition dbxref GOC:mh to GO:0033269
  * Copied GO:0033269 to GO:0033267 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033269
* Populated new object GO:0033270 (macro)
  * Changed name of GO:0033270 from "<new term>" to "paranode region of axon"
  * Set definition of GO:0033270 to "An axon part that is located adjacent to the nodes of Ranvier and surrounded by lateral loop portions of myelin sheath."
  * Added definition dbxref GOC:mah to GO:0033270
  * Added definition dbxref GOC:mh to GO:0033270
  * Copied GO:0033270 to GO:0033267 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033270
* Populated new object GO:0033271 (macro)
  * Changed name of GO:0033271 from "<new term>" to "myo-inositol phosphate transport"
  * Set definition of GO:0033271 to "The directed movement of any phosphorylated myo-inositol into, out of, within or between cells."
  * Added definition dbxref GOC:mah to GO:0033271
  * Copied GO:0033271 to GO:0015798 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033271
* Populated new object GO:0033272 (macro)
  * Changed name of GO:0033272 from "<new term>" to "myo-inositol hexakisphosphate transport"
  * Set definition of GO:0033272 to "The directed movement of myo-inositol hexakisphosphate into, out of, within or between cells."
  * Added definition dbxref ChEBI:17401 to GO:0033272
  * Added definition dbxref GOC:mah to GO:0033272
  * Added synonym "phytate transport" to GO:0033272
  * Changed synonym scope of GO:0033272 from "Related" to "Exact"
  * Copied GO:0033272 to GO:0033271 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033272
* Populated new object GO:0033273 (macro)
  * Changed name of GO:0033273 from "<new term>" to "response to vitamin"
  * Set definition of GO:0033273 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin stimulus."
  * Added definition dbxref GOC:sl to GO:0033273
  * Copied GO:0033273 to GO:0007584 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033273
* Populated new object GO:0033274 (macro)
  * Changed name of GO:0033274 from "<new term>" to "response to vitamin B2"
  * Set definition of GO:0033274 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B2 stimulus."
  * Added definition dbxref GOC:sl to GO:0033274
  * Added synonym "response to riboflavin" to GO:0033274
  * Changed synonym scope of GO:0033274 from "Related" to "Exact"
  * Copied GO:0033274 to GO:0033273 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033274
* Populated new object GO:0043741 (macro)
  * Changed name of GO:0043741 from "<new term>" to "L-2-aminoadipate N-acetyltransferase activity"
  * Set definition of GO:0043741 to "Catalysis of the reaction: L-2-aminoadipate + acetyl-CoA <=> N2-acetyl-L-aminoadipate + CoA."
  * Added definition dbxref IMG:01447 to GO:0043741
  * Added general dbxref EC:2.3.1.- to GO:0043741
  * Copied GO:0043741 to GO:0008080 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043741
* Populated new object GO:0043742 (macro)
  * Changed name of GO:0043742 from "<new term>" to "LL-diaminopimelate aminotransferase activity"
  * Set definition of GO:0043742 to "Catalysis of the reaction: LL-2,6-diaminoheptanedioate + 2-oxoglutarate = (S)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate + L-glutamate + H2O."
  * Added definition dbxref EC:2.6.1.83 to GO:0043742
  * Added general dbxref EC:2.6.1.83 to GO:0043742
  * Added synonym "LL-2,6-diaminoheptanedioate:2-oxoglutarate aminotransferase" to GO:0043742
  * Changed synonym scope of GO:0043742 from "Related" to "Exact"
  * Added synonym "LL-DAP aminotransferase" to GO:0043742
  * Changed synonym scope of GO:0043742 from "Related" to "Exact"
  * Added synonym "LL-DAP-AT" to GO:0043742
  * Changed synonym scope of GO:0043742 from "Related" to "Exact"
  * Added synonym "LL-diaminopimelate transaminase" to GO:0043742
  * Changed synonym scope of GO:0043742 from "Related" to "Exact"
  * Copied GO:0043742 to GO:0008483 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043742
* Populated new object GO:0043743 (macro)
  * Changed name of GO:0043743 from "<new term>" to "LPPG:FO 2-phospho-L-lactate transferase activity"
  * Set definition of GO:0043743 to "Catalysis of the reaction: 7,8-didemethyl-8-hydroxy-5-deazariboflavin + lactyl-2-diphospho-5'-guanosine = coenzyme F420-0 + GMP."
  * Added definition dbxref IMG:01551 to GO:0043743
  * Added general dbxref EC:2.7.1.- to GO:0043743
  * Copied GO:0043743 to GO:0016773 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043743
* Changed definition of GO:0001300 from "The process associated with progression of the cell from its inception to the end of its lifespan that occur when the cell is in a non-dividing, or quiescent, state." to "The process associated with progression of the cell from its inception to the end of its lifespan that occurs when the cell is in a non-dividing, or quiescent, state."
* Deleted synonym "generation of a signal involved in cell-cell signalling" from GO:0001820
* Changed synonym scope of GO:0002430 from "Exact" to "Broad"
* Added synonym "glutathione reductase activity" to GO:0004362
* Changed synonym scope of GO:0004362 from "Related" to "Exact"
* Changed name of GO:0004794 from "threonine ammonia-lyase activity" to "L-threonine ammonia-lyase activity"
* Added synonym "threonine ammonia-lyase activity" to GO:0004794
* Changed synonym scope of GO:0004794 from "Related" to "Exact"
* Changed definition of GO:0007617 from "The behavioral interactions between organisms for the
purpose of mating, or sexual reproduction resulting in the formation of
zygotes." to "The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes."
* Set definition of GO:0009380 to "Any of the protein complexes formed by the UvrABC excinuclease system, which carries out nucleotide excision repair. Three different complexes are formed by the 3 proteins as they proceed through the excision repair process. First a complex consisting of two A subunits and one B subunit
bind DNA and unwind it around the damaged site. Then, the A subunits disassociate leaving
behind a stable complex between subunit B and DNA. Now, subunit C binds to this B+DNA complex and causes subunit B to nick the DNA on one side of the complex while subunit C nicks the DNA on the other side of the complex. DNA polymerase I and DNA ligase can then repair the resulting
gap."
* Added definition dbxref GOC:mah to GO:0009380
* Added definition dbxref GOC:mlg to GO:0009380
* Added definition dbxref PMID:15192705 to GO:0009380
* Copied GO:0009987 to GO:0032501 with type disjoint_from
* Copied GO:0009987 to GO:0051704 with type disjoint_from
* Changed definition of GO:0010149 from "A preprogrammed process that occurs in an organism that is associated with the dismantling of an anatomical structure and an overall decline in metabolism. This may include the breakdown of chloroplasts, membranes and other cellular components." to "A preprogrammed process that occurs in an organism that is associated with the dismantling of an anatomical structure and an overall decline in metabolism. This may include the breakdown of organelles, membranes and other cellular components."
* Changed synonym scope of GO:0010149 from "Exact" to "Narrow"
* Changed name of GO:0010264 from "phytate biosynthetic process" to "myo-inositol hexakisphosphate biosynthetic process"
* Added synonym "myo-inositol hexakisphosphate anabolism" to GO:0010264
* Changed synonym scope of GO:0010264 from "Related" to "Exact"
* Added synonym "myo-inositol hexakisphosphate biosynthetis" to GO:0010264
* Changed synonym scope of GO:0010264 from "Related" to "Exact"
* Added synonym "myo-inositol hexakisphosphate formation" to GO:0010264
* Changed synonym scope of GO:0010264 from "Related" to "Exact"
* Added synonym "myo-inositol hexakisphosphate synthesis" to GO:0010264
* Changed synonym scope of GO:0010264 from "Related" to "Exact"
* Added synonym "phytate biosynthetic process" to GO:0010264
* Changed synonym scope of GO:0010264 from "Related" to "Exact"
* Added synonym "phytate biosynthetis" to GO:0010264
* Changed synonym scope of GO:0010264 from "Related" to "Exact"
* Added synonym "response to thiamin" to GO:0010266
* Changed synonym scope of GO:0010266 from "Related" to "Exact"
* Added synonym "response to thiamine" to GO:0010266
* Changed synonym scope of GO:0010266 from "Related" to "Exact"
* Deleted GO:0010266 --OBO_REL:is_a--> GO:0007584
* Copied GO:0010266 to GO:0033273 with type OBO_REL:is_a
* Set definition of GO:0015627 to "A large protein complex, containing 12-15 subunits, that spans the cell envelope of Gram-negative bacteria and mediates the movement of secreted proteins from the cytoplasm into the extracellular environment. The complex includes a component in the cytoplasm, an inner membrane subcomplex that reaches into the periplasmic compartment and a secretion pore in the outer membrane."
* Added definition dbxref PMID:16448494 to GO:0015627
* Set definition of GO:0016008 to "The larger of the two mitochondrial derivatives that arise by the unfolding of the Nebenkern during flagellum elongation; the major mitochondrial derivative is ovoid and darker than the minor derivative."
* Added definition dbxref GOC:mah to GO:0016008
* Added definition dbxref PMID:17123504 to GO:0016008
* Set definition of GO:0016009 to "The smaller of the two mitochodrial derivatives that arise by the unfolding of the Nebenkern during flagellum elongation."
* Added definition dbxref GOC:mah to GO:0016009
* Added definition dbxref PMID:17123504 to GO:0016009
* Set definition of GO:0016935 to "A protein complex that forms a transmembrane channel through which chloride ions may pass in response to glycine binding to the channel complex or one of its constituent parts."
* Added definition dbxref GOC:mah to GO:0016935
* Set definition of GO:0017053 to "A protein complex that possesses activity that prevents or downregulates transcription."
* Added definition dbxref GOC:mah to GO:0017053
* Set definition of GO:0017054 to "A heterodimeric protein complex that can stably associate with TATA-binding protein on promoters, thereby preventing the assembly of transcription factors TFIIA and TFIIB and leading to repression of RNA polymerase II transcription. The two subunits, NC2alpha (Drap1) and NC2beta (Dr1), dimerize through histone fold domains of the H2A/H2B type present in the amino termini."
* Added definition dbxref PMID:15574413 to GO:0017054
* Set definition of GO:0017071 to "A protein complex that forms a transmembrane channel through which cations ions may pass in response to an intracellular cyclic nucleotide binding to the channel complex or one of its constituent parts."
* Added definition dbxref GOC:mah to GO:0017071
* Set definition of GO:0019183 to "A protein complex that forms a transmembrane channel through which chloride ions may pass in response to histamine binding to the channel complex or one of its constituent parts."
* Added definition dbxref GOC:mah to GO:0019183
* Deleted synonym "smoothened signalling pathway in ventral spinal cord patterning" from GO:0021776
* Deleted GO:0030673 --part_of--> GO:0030424
* Copied GO:0030673 to GO:0033267 with type OBO_REL:is_a
* Changed synonym scope of GO:0030968 from "Exact" to "Related"
* Deleted GO:0033189 --OBO_REL:is_a--> GO:0007584
* Copied GO:0033189 to GO:0033273 with type OBO_REL:is_a
* Deleted GO:0033197 --OBO_REL:is_a--> GO:0007584
* Copied GO:0033197 to GO:0033273 with type OBO_REL:is_a
* Deleted GO:0043194 --part_of--> GO:0030424
* Copied GO:0043194 to GO:0033267 with type OBO_REL:is_a
* Deleted GO:0043195 --part_of--> GO:0030424
* Copied GO:0043195 to GO:0033267 with type OBO_REL:is_a
* Deleted GO:0043196 --part_of--> GO:0030424
* Copied GO:0043196 to GO:0033267 with type OBO_REL:is_a
* Changed synonym scope of GO:0051091 from "Narrow" to "Exact"
* Copied GO:0051704 to GO:0032501 with type disjoint_from
* Changed definition of GO:0060133 from "The process whose specific outcome is the progression of a
somatotropin secreting cell over time, from its formation to the mature structure. A somatotropin secreting cell is an acidophilic cell of the
anterior pituitary that produces growth hormone, somatotropin." to "The process whose specific outcome is the progression of a somatotropin secreting cell over time, from its formation to the mature structure. A somatotropin secreting cell is an acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin."
* Changed definition of GO:0060134 from "The process by which a startle magnitude is reduced when the startling
stimulus is preceeded by a low-intensity prepulse." to "The process by which a startle magnitude is reduced when the startling stimulus is preceeded by a low-intensity prepulse."
* Changed definition of GO:0060135 from "A reproductive process occuring in the mother that allows an embryo
or fetus to develop within it." to "A reproductive process occuring in the mother that allows an embryo or fetus to develop within it."
* Changed definition of GO:0060147 from "Any process that that modulates the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism." to "Any process that modulates the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism."
* Changed definition of GO:0060148 from "Any process that that increases the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism." to "Any process that increases the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism."
* Changed definition of GO:0060149 from "Any process that that decreases the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism." to "Any process that decreases the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism."
* Changed definition of GO:0060150 from "Any process that that increases the frequency, rate or extent of the inactivation of gene expression of both viral genes and host homologues to those genes by a posttranscriptional mechanism in a virally infected cell." to "Any process that increases the frequency, rate or extent of the inactivation of gene expression of both viral genes and host homologues to those genes by a posttranscriptional mechanism in a virally infected cell."
* Changed definition of GO:0060151 from "The processes by which a peroxisome is transported to, and/or maintained in, a specific location. A peroxisome is a small membrane-bounded organelle that uses dioxygen (O2) to oxidize organic
molecules." to "The processes by which a peroxisome is transported to, and/or maintained in, a specific location. A peroxisome is a small membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules."
* Changed definition of GO:0060152 from "The microtubule-based process by which a peroxisome is transported to,
and/or maintained in, a specific location. A peroxisome is a small membrane-bounded organelle that uses dioxygen (O2) to oxidize organic
molecules." to "The microtubule-based process by which a peroxisome is transported to, and/or maintained in, a specific location. A peroxisome is a small membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules."


From gocvs at genome.Stanford.EDU  Fri Jun  8 21:30:41 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Fri, 8 Jun 2007 21:30:41 -0700 (PDT)
Subject: [go-diff] GO update 06/08/2007
Message-ID: <200706090430.VAA29341@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.342 by 5.345

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0033275
* Created object of type obo:TERM with id GO:0033276
* Created object of type obo:TERM with id GO:0043744
* Created object of type obo:TERM with id GO:0043745
* Created object of type obo:TERM with id GO:0043746
* Created object of type obo:TERM with id GO:0043747
* Created object of type obo:TERM with id GO:0043748
* Created object of type obo:TERM with id GO:0043749
* Created object of type obo:TERM with id GO:0043750
* Created object of type obo:TERM with id GO:0043751
* Populated new object GO:0033275 (macro)
  * Changed name of GO:0033275 from "<new term>" to "actin-myosin filament sliding"
  * Set definition of GO:0033275 to "The sliding movement of actin thin filaments and myosin thick filaments past each other."
  * Added definition dbxref GOC:pf to GO:0033275
  * Added synonym "actin filament sliding" to GO:0033275
  * Copied GO:0033275 to GO:0030048 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033275
* Populated new object GO:0033276 (macro)
  * Changed name of GO:0033276 from "<new term>" to "transcription factor TFTC complex"
  * Set definition of GO:0033276 to "A protein complex that does not contain either a TATA-binding protein (TBP) or a TBP-like factor, but is composed of several TAFIIs and other proteins, including a histone acetyltransferase. This complex is able to nucleate transcription initiation by RNA polymerase II, can mediate transcriptional activation, and has histone acetyltransferase activity."
  * Added definition dbxref PMID:10373431 to GO:0033276
  * Added definition dbxref PMID:9603525 to GO:0033276
  * Copied GO:0033276 to GO:0043234 with type OBO_REL:is_a
  * Copied GO:0033276 to GO:0016591 with type part_of
  * Assigned namespace "cellular_component" to GO:0033276
* Populated new object GO:0043744 (macro)
  * Changed name of GO:0043744 from "<new term>" to "N2-acetyl-L-aminoadipate kinase activity"
  * Set definition of GO:0043744 to "Catalysis of the reaction: N2-acetyl-L-aminoadipate + ATP = N2-acetyl-L-aminoadipyl-delta-phosphate + ADP."
  * Added definition dbxref IMG:01448 to GO:0043744
  * Added general dbxref EC:2.7.2.- to GO:0043744
  * Added GO:0043744 to category gosubset_prok
  * Copied GO:0043744 to GO:0016774 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043744
* Populated new object GO:0043745 (macro)
  * Changed name of GO:0043745 from "<new term>" to "N2-acetyl-L-aminoadipate semialdehyde dehydrogenase activity"
  * Set definition of GO:0043745 to "Catalysis of the reaction: N2-acetyl-L-aminoadipyl-delta-phosphate + NADPH + H+ = N2-acetyl-L-aminoadipate semialdehyde + NADP+ + orthophosphate."
  * Added definition dbxref IMG:01449 to GO:0043745
  * Added general dbxref EC:1.2.1.- to GO:0043745
  * Added GO:0043745 to category gosubset_prok
  * Copied GO:0043745 to GO:0016620 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043745
* Populated new object GO:0043746 (macro)
  * Changed name of GO:0043746 from "<new term>" to "N2-acetyl-L-lysine aminotransferase activity"
  * Set definition of GO:0043746 to "Catalysis of the reaction: N2-acetyl-L-aminoadipate semialdehyde + L-glutamate = 2-oxoglutarate + N2-acetyl-L-lysine."
  * Added definition dbxref IMG:01450 to GO:0043746
  * Added general dbxref EC:2.6.1.- to GO:0043746
  * Added GO:0043746 to category gosubset_prok
  * Copied GO:0043746 to GO:0008483 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043746
* Populated new object GO:0043747 (macro)
  * Changed name of GO:0043747 from "<new term>" to "N2-acetyl-L-lysine deacetylase activity"
  * Set definition of GO:0043747 to "Catalysis of the reaction: N2-acetyl-L-lysine + H2O = acetate + L-lysine."
  * Added definition dbxref IMG:01451 to GO:0043747
  * Added general dbxref EC:3.5.1.- to GO:0043747
  * Added GO:0043747 to category gosubset_prok
  * Copied GO:0043747 to GO:0016811 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043747
* Populated new object GO:0043748 (macro)
  * Changed name of GO:0043748 from "<new term>" to "O-succinylbenzoate synthase activity"
  * Set definition of GO:0043748 to "Catalysis of the reaction: 2-succinylbenzoate + H2O = 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate."
  * Added definition dbxref IMG:01733 to GO:0043748
  * Added general dbxref EC:3.5.1.- to GO:0043748
  * Added GO:0043748 to category gosubset_prok
  * Copied GO:0043748 to GO:0016836 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043748
* Populated new object GO:0043749 (macro)
  * Changed name of GO:0043749 from "<new term>" to "phenol, water dikinase activity"
  * Set definition of GO:0043749 to "Catalysis of the reaction: phenol + MgATP + H2O = phenylphosphate + MgAMP + orthophosphate."
  * Added definition dbxref PMID: to GO:0043749
  * Added general dbxref EC:2.7.9.- to GO:0043749
  * Added GO:0043749 to category gosubset_prok
  * Added synonym "ATP:phenol:water phosphotransferase" to GO:0043749
  * Changed synonym scope of GO:0043749 from "Related" to "Exact"
  * Added synonym "phenol:water dikinase activity" to GO:0043749
  * Changed synonym scope of GO:0043749 from "Related" to "Exact"
  * Added synonym "phenylphosphate synthase" to GO:0043749
  * Changed synonym scope of GO:0043749 from "Related" to "Exact"
  * Copied GO:0043749 to GO:0016781 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043749
* Populated new object GO:0043750 (macro)
  * Changed name of GO:0043750 from "<new term>" to "phosphatidylinositol alpha-mannosyltransferase activity"
  * Set definition of GO:0043750 to "Catalysis of the transfer of one or more alpha-D-mannose residues from GDP-mannose to positions 2,6 and others in 1-phosphatidyl-myo-inositol."
  * Added definition dbxref EC:2.4.1.57 to GO:0043750
  * Added general dbxref EC:2.4.1.57 to GO:0043750
  * Added GO:0043750 to category gosubset_prok
  * Added synonym "GDP mannose-phosphatidyl-myo-inositol alpha-mannosyltransferase" to GO:0043750
  * Changed synonym scope of GO:0043750 from "Related" to "Exact"
  * Added synonym "GDP mannose:1-phosphatidyl-myo-inositol alpha-D-mannosyltransferase" to GO:0043750
  * Changed synonym scope of GO:0043750 from "Related" to "Exact"
  * Added synonym "GDP-mannose:1-phosphatidyl-1D-myo-inositol alpha-D-mannosyltransferase" to GO:0043750
  * Changed synonym scope of GO:0043750 from "Related" to "Exact"
  * Added synonym "guanosine diphosphomannose-phosphatidyl-inositol alpha-mannosyltransferase" to GO:0043750
  * Changed synonym scope of GO:0043750 from "Related" to "Exact"
  * Added synonym "phosphatidyl-myo-inositol alpha-mannosyltransferase" to GO:0043750
  * Changed synonym scope of GO:0043750 from "Related" to "Exact"
  * Copied GO:0043750 to GO:0016758 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043750
* Populated new object GO:0043751 (macro)
  * Changed name of GO:0043751 from "<new term>" to "polyphosphate:AMP phosphotransferase activity"
  * Set definition of GO:0043751 to "Catalysis of the reaction: (polyphosphate)n + AMP = (polyphosphate)n-1 + ADP."
  * Added definition dbxref http://cancerweb.ncl.ac.uk/ to GO:0043751
  * Added general dbxref EC:2.7.4.- to GO:0043751
  * Added synonym "PAP" to GO:0043751
  * Changed synonym scope of GO:0043751 from "Related" to "Exact"
  * Added synonym "PPT" to GO:0043751
  * Changed synonym scope of GO:0043751 from "Related" to "Exact"
  * Copied GO:0043751 to GO:0016776 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043751
* Changed name of GO:0006324 from "S-phase regulated histone modification" to "S-phase-specific histone modification"
* Set definition of GO:0006324 to "The covalent alteration of one or more amino acid residues within a histone protein that takes place during, and results in a modification pattern characteristic of, S phase of the cell cycle."
* Added definition dbxref GOC:mah to GO:0006324
* Added definition dbxref PMID:9990026 to GO:0006324
* Copied GO:0006324 to GO:0051320 with type part_of
* Set definition of GO:0006475 to "The addition of an acetyl group to a non-terminal amino acid in a protein."
* Added definition dbxref GOC:mah to GO:0006475
* Set definition of GO:0006482 to "The removal of a methyl group, from a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom."
* Added definition dbxref GOC:mah to GO:0006482
* Set definition of GO:0006609 to "The directed movement of a heterogeneous nuclear ribonucleoprotein complex from the cytoplasm into the nucleus, across the nuclear membrane."
* Added definition dbxref GOC:mah to GO:0006609
* Changed definition of GO:0007225 from "The post translational modification of members of the Hedgehog family of signaling proteins in order for Hedgehog to exert its biological activity. These modifications include cleavage of its signal sequence, autocatalytic protein cleavage and the attachment of sterol moieties." to "The posttranslational modification of members of the Hedgehog family of signaling proteins in order for Hedgehog to exert its biological activity. These modifications include cleavage of its signal sequence, autocatalytic protein cleavage and the attachment of sterol moieties."
* Changed name of GO:0009249 from "protein-lipoylation" to "protein lipoylation"
* Set definition of GO:0009249 to "The addition of a lipoyl group to an amino acid residue in a protein."
* Added definition dbxref GOC:mah to GO:0009249
* Changed definition of GO:0016485 from "The post translational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations." to "The posttranslational modification of a protein, particularly secretory proteins and proteins targeted for membranes or specific cellular locations."
* Deleted definition dbxref EC:4.2.-.- from GO:0016836
* Added definition dbxref EC:4.2.1 to GO:0016836
* Set definition of GO:0018020 to "The addition of a methyl group to a glutamic acid residue in a protein."
* Added definition dbxref GOC:mah to GO:0018020
* Changed name of GO:0018060 from "N-terminal peptidyl-cysteine acid deamination" to "N-terminal peptidyl-cysteine deamination"
* Set definition of GO:0018073 to "The addition of one or more bromine atoms to an amino acid residue in a protein."
* Added definition dbxref GOC:mah to GO:0018073
* Changed definition of GO:0018077 from "The posttranslational iodination of protein amino-acids." to "The addition of one or more iodine atoms to an amino acid residue in a protein."
* Deleted definition dbxref GOC:ma from GO:0018077
* Added definition dbxref GOC:mah to GO:0018077
* Changed definition of GO:0018216 from "Addition of a methyl group to any residue of peptidyl-arginine." to "The addition of a methyl group to an arginine residue in a protein."
* Set definition of GO:0018246 to "The formation of a linkage between a protein amino acid and coenzyme A."
* Added definition dbxref GOC:mah to GO:0018246
* Set definition of GO:0018309 to "The formation of a linkage between a protein amino acid and flavin mononucleotide (FMN)."
* Added definition dbxref GOC:mah to GO:0018309
* Set definition of GO:0018364 to "The addition of a methyl group to a glutamine residue in a protein."
* Added definition dbxref GOC:mah to GO:0018364
* Changed definition of GO:0018389 from "The deamination of valine to form isobutyrate." to "The deamination of the N-terminal valine residue of a protein to form isobutyrate."
* Added definition dbxref GOC:mah to GO:0018389
* Set definition of GO:0018393 to "The addition of an acetyl group to a non-terminal lysine residue in a protein."
* Added definition dbxref GOC:mah to GO:0018393
* Deleted GO:0030049 --OBO_REL:is_a--> GO:0030048
* Copied GO:0030049 to GO:0033275 with type OBO_REL:is_a
* Set definition of GO:0043695 to "The series of events in which a pheromone stimulus is received by a cell and converted into a molecular signal."
* Added definition dbxref GOC:mah to GO:0043695
* Added GO:0043733 to category gosubset_prok
* Added GO:0043734 to category gosubset_prok
* Added GO:0043736 to category gosubset_prok
* Added GO:0043739 to category gosubset_prok
* Added GO:0043741 to category gosubset_prok
* Added GO:0043743 to category gosubset_prok
* Changed synonym scope of GO:0051091 from "Narrow" to "Exact"


From gocvs at genome.Stanford.EDU  Mon Jun 11 21:30:38 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Mon, 11 Jun 2007 21:30:38 -0700 (PDT)
Subject: [go-diff] GO update 06/11/2007
Message-ID: <200706120430.VAA26903@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.345 by 5.348

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Changed definition of GO:0000707 from "During meiosis, the assembly of strand exchange proteins (recombinases) into higher order oligomers on single-stranded DNA." to "During meiosis, the aggregation and bonding together of strand exchange proteins (recombinases) to form higher order oligomers on single-stranded DNA."
* Changed definition of GO:0000921 from "Assembly and organization of septins and associated proteins into a structure resembling a ring at the cell cortex." to "The aggregation and bonding together of septins and associated proteins to form an organized structure resembling a ring at the cell cortex."
* Changed name of GO:0006267 from "pre-replicative complex formation" to "pre-replicative complex assembly"
* Changed definition of GO:0006267 from "The assembly of the pre-replicative complex, multiprotein complex that forms at eukaryotic DNA replication origins during late M phase; its presence is required for replication initiation." to "The aggregation and bonding together of a set of components to form the pre-replicative complex, multiprotein complex that forms at eukaryotic DNA replication origins during late M phase; its presence is required for replication initiation."
* Added synonym "pre-replicative complex formation" to GO:0006267
* Changed synonym scope of GO:0006267 from "Related" to "Exact"
* Changed name of GO:0006294 from "nucleotide-excision repair, preincision complex formation" to "nucleotide-excision repair, preincision complex assembly"
* Changed definition of GO:0006294 from "The assembly of the multiprotein complex involved in damage recognition, DNA helix unwinding, and endonucleolytic cleavage at the site of DNA damage. This assembly occurs before the phosphodiester backbone of the damaged strand is cleaved 3' and 5' of the site of DNA damage." to "The aggregation and bonding together of proteins on DNA to form the multiprotein complex involved in damage recognition, DNA helix unwinding, and endonucleolytic cleavage at the site of DNA damage. This assembly occurs before the phosphodiester backbone of the damaged strand is cleaved 3' and 5' of the site of DNA damage."
* Added synonym "nucleotide-excision repair, preincision complex formation" to GO:0006294
* Changed synonym scope of GO:0006294 from "Related" to "Exact"
* Changed definition of GO:0007043 from "The aggregation and bonding together of a junction between cells." to "The aggregation and bonding together of a set of components to form a junction between cells."
* Changed definition of GO:0007053 from "The formation of the spindle during a meiotic cell cycle in males. As in, but not restricted to, the multicellular animals (Metazoa, ncbi_taxonomy_id:33208)." to "The aggregation and bonding together of a set of components to form the spindle during a meiotic cell cycle in males. As in, but not restricted to, the multicellular animals (Metazoa, ncbi_taxonomy_id:33208)."
* Changed definition of GO:0007056 from "The formation of the spindle during a meiotic cell cycle in females. As in, but not restricted to, the multicellular animals (Metazoa, ncbi_taxonomy_id:33208)." to "The aggregation and bonding together of a set of components to form the spindle during a meiotic cell cycle in females. As in, but not restricted to, the multicellular animals (Metazoa, ncbi_taxonomy_id:33208)."
* Changed definition of GO:0007057 from "The formation of the spindle during meiosis I of a meiotic cell cycle in females. As in, but not restricted to, the multicellular animals (Metazoa, ncbi_taxonomy_id:33208)." to "The aggregation and bonding together of a set of components to form the spindle during meiosis I of a meiotic cell cycle in females. As in, but not restricted to, the multicellular animals (Metazoa, ncbi_taxonomy_id:33208)."
* Changed definition of GO:0007058 from "The formation of the spindle during meiosis II of a meiotic cell cycle in females. As in, but not restricted to, the multicellular animals (Metazoa, ncbi_taxonomy_id:33208)." to "The aggregation and bonding together of a set of components to form the spindle during meiosis II of a meiotic cell cycle in females. As in, but not restricted to, the multicellular animals (Metazoa, ncbi_taxonomy_id:33208)."
* Changed definition of GO:0007146 from "The assembly of small, electron dense structures in association with meiotic chromosomes." to "During meiosis, the aggregation and bonding together of strand exchange proteins (recombinases) to form small, electron dense structures in association with meiotic chromosomes."
* Changed name of GO:0007172 from "signal complex formation" to "signal complex assembly"
* Changed definition of GO:0007172 from "Formation of a complex by dimerization of a receptor protein tyrosine kinase followed by the association of several different intracellular signaling molecules with the cytoplasmic tails of the receptors; the resulting complex is capable of relaying a signal within a cell." to "The aggregation and bonding together of a set of components to form a complex capable of relaying a signal within a cell. Complex formation involves dimerization of a receptor protein tyrosine kinase followed by the association of several different intracellular signaling molecules with the cytoplasmic tails of the receptors."
* Added synonym "signal complex formation" to GO:0007172
* Changed synonym scope of GO:0007172 from "Related" to "Exact"
* Changed name of GO:0008180 from "signalosome complex" to "signalosome"
* Changed definition of GO:0008180 from "A complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome." to "A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome."
* Changed definition of GO:0009971 from "The formation of the anastral spindle in male meiotic cells." to "The aggregation and bonding together of a set of components to form the anastral spindle in male meiotic cells."
* Deleted GO:0009987 --disjoint_from--> GO:0051704
* Deleted GO:0009987 --disjoint_from--> GO:0032501
* Changed definition of GO:0010207 from "Formation of photosystem II complex on thylakoid membrane. In plants, the photosystem II complex consists of over 20 polypeptides encoded by either nuclear or chloroplast genome." to "The aggregation and bonding together of a set of components to form a photosystem II complex on thylakoid membrane. In plants, the photosystem II complex consists of over 20 polypeptides encoded by either nuclear or chloroplast genome."
* Changed definition of GO:0010257 from "The formation of an NADH dehydrogenase complex." to "The aggregation and bonding together of a set of components to form an NADH dehydrogenase complex."
* Changed definition of GO:0010258 from "The formation of NADH:plastoquinone dehydrogenase complex, which is involved in the non-photochemical reduction of plastoquinones, as well as the cyclic electron transport around photosystem I." to "The aggregation and bonding together of a set of components to form NADH:plastoquinone dehydrogenase complex, which is involved in the non-photochemical reduction of plastoquinones, as well as the cyclic electron transport around photosystem I."
* Changed definition of GO:0010270 from "Formation of the oxygen evolving complex (OEC) of photosystem II on thylakoid membrane. In plants, the photosystem II OEC consists of three extrinsic nuclear-encoded polypeptides: PsbO, PsbP and PsbQ; and protects the CaMn4 cluster bound to D1 and CP43 proteins." to "The aggregation and bonding together of a set of components to form the oxygen evolving complex (OEC) of photosystem II on thylakoid membrane. In plants, the photosystem II OEC consists of three extrinsic nuclear-encoded polypeptides: PsbO, PsbP and PsbQ; and protects the CaMn4 cluster bound to D1 and CP43 proteins."
* Changed definition of GO:0010275 from "The formation of NAD(P)H dehydrogenase complex, which is involved in electron transport from an unidentified electron donor, possibly NAD(P)H or ferredoxin(Fd) to the plastoquinone pool." to "The aggregation and bonding together of a set of components to form NAD(P)H dehydrogenase complex, which is involved in electron transport from an unidentified electron donor, possibly NAD(P)H or ferredoxin(Fd) to the plastoquinone pool."
* Changed definition of GO:0010387 from "The aggregation and bonding together of a set of components to form a signalosome complex." to "The aggregation and bonding together of a set of components to form a signalosome."
* Deleted GO:0010387 --OBO_REL:is_a--> GO:0006461
* Copied GO:0010387 to GO:0043623 with type OBO_REL:is_a
* Changed definition of GO:0016457 from "The process by which the complex that mediates dosage compensation is assembled on the X chromosome of the heterogametic sex, ultimately resulting in a two-fold increase in transcription from this chromosome." to "The aggregation and bonding together of proteins on DNA to form the complex that mediates dosage compensation on the X chromosome of the heterogametic sex, ultimately resulting in a two-fold increase in transcription from this chromosome."
* Copied GO:0016998 to GO:0044248 with type OBO_REL:is_a
* Changed definition of GO:0017062 from "Formation of cytochrome bc(1) complex, a transmembrane lipoprotein complex that it catalyzes the reduction of cytochrome c by accepting reducing equivalents from Coenzyme Q, by the aggregation and bonding together of its constituents." to "The aggregation and bonding together of a set of components to form the cytochrome bc(1) complex, a transmembrane lipoprotein complex that it catalyzes the reduction of cytochrome c by accepting reducing equivalents from Coenzyme Q, by the aggregation and bonding together of its constituents."
* Changed definition of GO:0032981 from "The formation of mitochondrial respiratory chain complex I." to "The aggregation and bonding together of a set of components to form mitochondrial respiratory chain complex I."
* Deleted definition dbxref PMID: 15330259 from GO:0033028
* Added definition dbxref PMID:15330259 to GO:0033028
* Changed definition of GO:0033108 from "The formation of a mitochondrial respiratory chain complex." to "The aggregation and bonding together of a set of components to form a mitochondrial respiratory chain complex."
* Changed definition of GO:0042139 from "The assembly of small, electron dense structures in association with meiotic chromosomes during leptotene and zygotene." to "During meiosis, the aggregation and bonding together of strand exchange proteins (recombinases) to form small, electron dense structures in association with meiotic chromosomes during leptotene and zygotene."
* Changed definition of GO:0042140 from "The assembly of small, electron dense structures in association with meiotic chromosomes during pachytene. Involved in the catalysis crossing over." to "During meiosis, the aggregation and bonding together of strand exchange proteins (recombinases) to form small, electron dense structures in association with meiotic chromosomes during pachytene. Involved in the catalysis crossing over."
* Changed definition of GO:0042714 from "The processes by which the complex that mediates dosage compensation is assembled on one or more X chromosomes." to "The aggregation and bonding together of proteins on DNA to form the complex that mediates dosage compensation on one or more X chromosomes."
* Changed definition of GO:0042715 from "The process by which the complex that mediates dosage compensation is assembled on both X chromosomes in the monogametic sex, ultimately resulting in a two-fold reduction in transcription from these chromosomes." to "The aggregation and bonding together of proteins on DNA to form the complex that mediates dosage compensation on both X chromosomes in the monogametic sex, ultimately resulting in a two-fold reduction in transcription from these chromosomes."
* Changed definition of GO:0048195 from "A process by which an incoming coat component recognizes both GTPase and a membrane protein to form the membrane priming complex." to "The aggregation and bonding together of a set of components to form a membrane priming complex. An incoming coat component recognizes both GTPase and a membrane protein to form the priming complex."
* Changed definition of GO:0048197 from "The process by which priming complexes associate laterally and additional coat proteins are recruited from the cytosol to the forming coat. Cargo proteins diffuse into the budding site and become trapped by their interactions with the coat." to "The aggregation and bonding together of priming complexes to form a coat on a Golgi membrane. Priming complexes associate laterally and additional coat proteins are recruited from the cytosol to the forming coat. Cargo proteins diffuse into the budding site and become trapped by their interactions with the coat."
* Changed definition of GO:0048564 from "Formation of the photosystem I complex on the thylakoid membrane." to "The aggregation and bonding together of a set of components to form a photosystem I complex on the thylakoid membrane."
* Changed synonym scope of GO:0051091 from "Narrow" to "Exact"
* Changed name of GO:0051123 from "transcriptional preinitiation complex formation" to "transcriptional preinitiation complex assembly"
* Changed definition of GO:0051123 from "The assembly of the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription from the RNA polymerase II promoter." to "The aggregation and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription from the RNA polymerase II promoter."
* Deleted synonym "transcriptional preinitiation complex assembly" from GO:0051123
* Added synonym "transcriptional preinitiation complex formation" to GO:0051123
* Changed synonym scope of GO:0051123 from "Related" to "Exact"
* Copied GO:0051123 to GO:0065004 with type OBO_REL:is_a
* Changed definition of GO:0051225 from "The formation of the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart." to "The aggregation and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart."
* Changed definition of GO:0051255 from "The cell cycle process whereby spindle midzone is formed. The spindle midzone is the area in the center of the spindle where the spindle microtubules from opposite poles overlap." to "The cell cycle process whereby aggregation and bonding together of a set of components to form the spindle midzone. The spindle midzone is the area in the center of the spindle where the spindle microtubules from opposite poles overlap."
* Changed definition of GO:0051292 from "The process by which a nuclear pore is formed." to "The aggregation and bonding together of a set of components to form a nuclear pore complex."
* Added definition dbxref GOC:mah to GO:0051292
* Changed definition of GO:0051382 from "The formation of the kinetochore, a multisubunit complex that is located at the pericentric region of DNA and provides an attachment point for the spindle microtubules." to "The aggregation and bonding together of a set of components to form the kinetochore, a multisubunit complex that is located at the pericentric region of DNA and provides an attachment point for the spindle microtubules."
* Deleted GO:0051704 --disjoint_from--> GO:0032501
* Changed definition of GO:0055048 from "The formation of the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart, in the absence of centrosomes. Formation is initiated by the nucleation of microtubules (MTs) in the vicinity of condensed chromatin. MTs then attach to and congress around the chromatin due to activity of microtubule motors. A bipolar spindle is formed by focusing of the terminal ends of the MT array into spindle poles by molecular motors and cross-linking proteins." to "The aggregation and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart, in the absence of centrosomes. Formation is initiated by the nucleation of microtubules (MTs) in the vicinity of condensed chromatin. MTs then attach to and congress around the chromatin due to activity of microtubule motors. A bipolar spindle is formed by focusing of the terminal ends of the MT array into spindle poles by molecular motors and cross-linking proteins."
* Changed definition of GO:0055049 from "The formation of the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart, in the presence of centrosomes." to "The aggregation and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart, in the presence of centrosomes."
* Changed definition of GO:0055050 from "The formation of the astral spindle in male meiotic cells." to "The aggregation and bonding together of a set of components to form the astral spindle in male meiotic cells."


From gocvs at genome.Stanford.EDU  Tue Jun 12 21:30:38 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Tue, 12 Jun 2007 21:30:38 -0700 (PDT)
Subject: [go-diff] GO update 06/12/2007
Message-ID: <200706130430.VAA10352@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.348 by 5.350

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0043752
* Created object of type obo:TERM with id GO:0043753
* Created object of type obo:TERM with id GO:0043754
* Created object of type obo:TERM with id GO:0043755
* Created object of type obo:TERM with id GO:0043756
* Created object of type obo:TERM with id GO:0043757
* Created object of type obo:TERM with id GO:0043758
* Created object of type obo:TERM with id GO:0043759
* Populated new object GO:0043752 (macro)
  * Changed name of GO:0043752 from "<new term>" to "adenosylcobinamide kinase activity"
  * Set definition of GO:0043752 to "Catalysis of the reaction: RTP + adenosylcobinamide = adenosylcobinamide phosphate + RDP (where RTP is either ATP or GTP)."
  * Added definition dbxref EC:2.7.1.156 to GO:0043752
  * Added general dbxref EC:2.7.1.156 to GO:0043752
  * Added GO:0043752 to category gosubset_prok
  * Added synonym "adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase" to GO:0043752
  * Changed synonym scope of GO:0043752 from "Related" to "Broad"
  * Added synonym "AdoCbi kinase/AdoCbi-phosphate guanylyltransferase" to GO:0043752
  * Changed synonym scope of GO:0043752 from "Related" to "Broad"
  * Added synonym "CobU" to GO:0043752
  * Added synonym "RTP:adenosylcobinamide phosphotransferase" to GO:0043752
  * Changed synonym scope of GO:0043752 from "Related" to "Exact"
  * Copied GO:0043752 to GO:0016773 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043752
* Populated new object GO:0043753 (macro)
  * Changed name of GO:0043753 from "<new term>" to "adenosylcobinamide-phosphate guanylyltransferase activity"
  * Set definition of GO:0043753 to "Catalysis of the reaction: GTP + adenosylcobinamide phosphate = diphosphate + adenosylcobinamide-GDP."
  * Added definition dbxref EC:2.7.7.62 to GO:0043753
  * Added general dbxref EC:2.7.7.62 to GO:0043753
  * Added GO:0043753 to category gosubset_prok
  * Added synonym "adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase" to GO:0043753
  * Changed synonym scope of GO:0043753 from "Related" to "Broad"
  * Added synonym "AdoCbi kinase/AdoCbi-phosphate guanylyltransferase" to GO:0043753
  * Changed synonym scope of GO:0043753 from "Related" to "Broad"
  * Added synonym "CobU" to GO:0043753
  * Added synonym "GTP:adenosylcobinamide-phosphate guanylyltransferase" to GO:0043753
  * Changed synonym scope of GO:0043753 from "Related" to "Exact"
  * Copied GO:0043753 to GO:0016779 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043753
* Populated new object GO:0043754 (macro)
  * Changed name of GO:0043754 from "<new term>" to "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity"
  * Set definition of GO:0043754 to "Catalysis of the reaction: 2-methylpropanoyl-CoA + enzyme N6-(dihydrolipoyl)lysine = CoA + enzyme N6-(S-[2-methylpropanoyl]dihydrolipoyl)lysine."
  * Added definition dbxref EC:2.3.1.168 to GO:0043754
  * Added general dbxref EC:2.3.1.168 to GO:0043754
  * Added GO:0043754 to category gosubset_prok
  * Added synonym "dihydrolipoyl transacylase" to GO:0043754
  * Changed synonym scope of GO:0043754 from "Related" to "Exact"
  * Added synonym "enzyme-dihydrolipoyllysine:2-methylpropanoyl-CoA S-(2-methylpropanoyl)transferase" to GO:0043754
  * Changed synonym scope of GO:0043754 from "Related" to "Exact"
  * Copied GO:0043754 to GO:0016747 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043754
* Populated new object GO:0043755 (macro)
  * Changed name of GO:0043755 from "<new term>" to "alpha-ribazole phosphatase activity"
  * Set definition of GO:0043755 to "Catalysis of the reaction: alpha-ribazole 5'-phosphate + H2O = alpha-ribazole + phosphate."
  * Added definition dbxref EC:3.1.3.73 to GO:0043755
  * Added general dbxref EC:3.1.3.73 to GO:0043755
  * Added GO:0043755 to category gosubset_prok
  * Added synonym "alpha-ribazole-5'-phosphate phosphohydrolase" to GO:0043755
  * Changed synonym scope of GO:0043755 from "Related" to "Exact"
  * Added synonym "CobC" to GO:0043755
  * Copied GO:0043755 to GO:0016791 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043755
* Populated new object GO:0043756 (macro)
  * Changed name of GO:0043756 from "<new term>" to "adenosylcobinamide hydrolase activity"
  * Set definition of GO:0043756 to "Catalysis of the reaction: adenosylcobinamide + H2O = adenosylcobyric acid + (R)-1-aminopropan-2-ol."
  * Added definition dbxref EC:3.5.1.90 to GO:0043756
  * Added general dbxref EC:3.5.1.90 to GO:0043756
  * Added GO:0043756 to category gosubset_prok
  * Added synonym "adenosylcobinamide amidohydrolase" to GO:0043756
  * Changed synonym scope of GO:0043756 from "Related" to "Exact"
  * Added synonym "CbiZ" to GO:0043756
  * Copied GO:0043756 to GO:0016811 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043756
* Populated new object GO:0043757 (macro)
  * Changed name of GO:0043757 from "<new term>" to "adenosylcobinamide-phosphate synthase activity"
  * Set definition of GO:0043757 to "Catalysis of the reactions: (1) ATP + adenosylcobyric acid + (R)-1-aminopropan-2-yl phosphate = ADP + phosphate + adenosylcobinamide phosphate and (2) ATP + adenosylcobyric acid + (R)-1-aminopropan-2-ol = ADP + phosphate + adenosylcobinamide."
  * Added definition dbxref EC:6.3.1.10 to GO:0043757
  * Added general dbxref EC:6.3.1.10 to GO:0043757
  * Added GO:0043757 to category gosubset_prok
  * Added synonym "adenosylcobyric acid:(R)-1-aminopropan-2-yl phosphate ligase (ADP-forming)" to GO:0043757
  * Changed synonym scope of GO:0043757 from "Related" to "Exact"
  * Added synonym "CbiB" to GO:0043757
  * Copied GO:0043757 to GO:0016880 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043757
* Populated new object GO:0043758 (macro)
  * Changed name of GO:0043758 from "<new term>" to "acetate-CoA ligase (ADP-forming) activity"
  * Set definition of GO:0043758 to "Catalysis of the reaction: ATP + acetate + CoA = ADP + phosphate + acetyl-CoA."
  * Added definition dbxref EC:6.2.1.13 to GO:0043758
  * Added general dbxref EC:6.2.1.13 to GO:0043758
  * Added GO:0043758 to category gosubset_prok
  * Added synonym "acetate thiokinase" to GO:0043758
  * Changed synonym scope of GO:0043758 from "Related" to "Exact"
  * Added synonym "acetate--CoA ligase (ADP-forming) activity" to GO:0043758
  * Changed synonym scope of GO:0043758 from "Related" to "Exact"
  * Added synonym "acetyl coenzyme A synthetase (adenosine diphosphate-forming)" to GO:0043758
  * Changed synonym scope of GO:0043758 from "Related" to "Exact"
  * Added synonym "acetyl-CoA synthetase (ADP-forming)" to GO:0043758
  * Changed synonym scope of GO:0043758 from "Related" to "Exact"
  * Copied GO:0043758 to GO:0016878 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043758
* Populated new object GO:0043759 (macro)
  * Changed name of GO:0043759 from "<new term>" to "branched-chain acyl-CoA synthetase (ADP-forming) activity"
  * Set definition of GO:0043759 to "Catalysis of the reaction: ATP + 2-methylbutanoate + CoA = ADP + orthophosphate + 2-methylbutanoyl-CoA."
  * Added definition dbxref IMG:01425 to GO:0043759
  * Added general dbxref EC:6.2.1.- to GO:0043759
  * Added GO:0043759 to category gosubset_prok
  * Added synonym "branched chain acyl CoA synthetase (ADP-forming) activity" to GO:0043759
  * Changed synonym scope of GO:0043759 from "Related" to "Exact"
  * Added synonym "branched chain acyl-CoA synthetase (ADP-forming) activity" to GO:0043759
  * Changed synonym scope of GO:0043759 from "Related" to "Exact"
  * Added synonym "branched-chain acyl CoA synthetase (ADP-forming) activity" to GO:0043759
  * Changed synonym scope of GO:0043759 from "Related" to "Exact"
  * Copied GO:0043759 to GO:0016878 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043759
* Changed name of GO:0007293 from "egg chamber formation (sensu Insecta)" to "germarium-derived egg chamber formation"
* Changed definition of GO:0007293 from "Construction of a stage-1 egg chamber in the anterior part of the germarium, from the progeny of germ-line and somatic stem cells. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." to "Construction of a stage-1 egg chamber in the anterior part of the germarium, from the progeny of germ-line and somatic stem cells."
* Added definition dbxref GOC:mtg_sensu to GO:0007293
* Added synonym "egg chamber formation (sensu Insecta)" to GO:0007293
* Changed synonym scope of GO:0007293 from "Related" to "Exact"
* Changed name of GO:0007294 from "oocyte fate determination (sensu Insecta)" to "germarium-derived oocyte fate determination"
* Changed definition of GO:0007294 from "Process by which a cell becomes capable of differentiating autonomously into an oocyte cell regardless of its environment; upon determination, the cell fate cannot be reversed. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." to "Process by which a cell becomes capable of differentiating autonomously into an oocyte cell regardless of its environment; upon determination, the cell fate cannot be reversed."
* Added definition dbxref GOC:mtg_sensu to GO:0007294
* Added synonym "oocyte fate determination (sensu Insecta)" to GO:0007294
* Changed name of GO:0007295 from "egg chamber growth (sensu Insecta)" to "growth of a germarium-derived egg chamber"
* Changed definition of GO:0007295 from "Growth of the egg chamber between the time it leaves the germarium and the onset of vitellogenesis. During this time both nurse cells and the oocyte undergo developmental changes including nuclear organization and cytoplasmic growth. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." to "Growth of the egg chamber between the time it leaves the germarium and the onset of vitellogenesis. During this time both nurse cells and the oocyte undergo developmental changes including nuclear organization and cytoplasmic growth."
* Added definition dbxref GOC:mtg_sensu to GO:0007295
* Added synonym "egg chamber growth (sensu Insecta)" to GO:0007295
* Changed synonym scope of GO:0007295 from "Related" to "Exact"
* Changed name of GO:0007300 from "nurse cell to oocyte transport (sensu Insecta)" to "ovarian nurse cell to oocyte transport"
* Changed definition of GO:0007300 from "Transfer of constituents synthesized in the nurse cells to the oocyte, through the ring canals, as the egg chamber is growing. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." to "Transfer of constituents synthesized in the ovarian nurse cells to the oocyte, through the ring canals, as the egg chamber is growing."
* Added definition dbxref GOC:mtg_sensu to GO:0007300
* Added synonym "nurse cell to oocyte transport (sensu Insecta)" to GO:0007300
* Changed synonym scope of GO:0007300 from "Related" to "Exact"
* Changed name of GO:0007304 from "eggshell formation (sensu Insecta)" to "chorion-containing eggshell formation"
* Changed definition of GO:0007304 from "The construction of an eggshell. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." to "The construction of a chorion-containing eggshell."
* Added definition dbxref GOC:mtg_sensu to GO:0007304
* Added synonym "eggshell formation (sensu Insecta)" to GO:0007304
* Changed synonym scope of GO:0007304 from "Related" to "Exact"
* Changed name of GO:0007305 from "vitelline membrane formation (sensu Insecta)" to "vitelline membrane formation in chorion-containing eggshell"
* Changed definition of GO:0007305 from "Construction of the vitelline membrane portion of an egg shell. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." to "Construction of the vitelline membrane portion of a chorion-containing eggshells, such as those eggshells found in insects."
* Added definition dbxref GOC:mtg_sensu to GO:0007305
* Added synonym "vitelline membrane formation (sensu Insecta)" to GO:0007305
* Changed synonym scope of GO:0007305 from "Related" to "Exact"
* Changed name of GO:0007306 from "insect chorion formation" to "eggshell chorion formation"
* Changed definition of GO:0007306 from "Construction of the chorion portion of the insect egg shell, which comprises the channels for gas exchange." to "Construction of the chorion portion of the eggshell, which comprises the channels for gas exchange in an insect eggshell."
* Added definition dbxref GOC:mtg_sensu to GO:0007306
* Added synonym "insect chorion formation" to GO:0007306
* Changed name of GO:0007307 from "chorion gene amplification" to "eggshell chorion gene amplification"
* Added definition dbxref GOC:mtg_sensu to GO:0007307
* added secondary id GO:0048110 to GO:0007308
* Added definition dbxref GOC:mtg_sensu to GO:0007308
* Added synonym "oocyte construction (sensu Insecta)" to GO:0007308
* Copied GO:0007308 to GO:0009993 with type part_of
* added secondary id GO:0048111 to GO:0007309
* Added definition dbxref GOC:mtg_sensu to GO:0007309
* Added synonym "oocyte axis determination (sensu Insecta)" to GO:0007309
* added secondary id GO:0048123 to GO:0007310
* Added definition dbxref GOC:mtg_sensu to GO:0007310
* Added synonym "oocyte dorsal/ventral axis determination (sensu Insecta)" to GO:0007310
* added secondary id GO:0048124 to GO:0007311
* Added definition dbxref GOC:mtg_sensu to GO:0007311
* Added synonym "maternal determination of dorsal/ventral axis, oocyte, germ-line encoded (sensu Insecta)" to GO:0007311
* added secondary id GO:0048128 to GO:0007312
* Added definition dbxref GOC:mtg_sensu to GO:0007312
* Added synonym "oocyte axis determination, oocyte nuclear migration (sensu Insecta)" to GO:0007312
* Changed synonym scope of GO:0007312 from "Related" to "Exact"
* Added synonym "oocyte axis determination, oocyte nucleus migration (sensu Insecta)" to GO:0007312
* Changed synonym scope of GO:0007312 from "Related" to "Exact"
* Added synonym "oocyte nuclear migration during oocyte axis determination (sensu Insecta)" to GO:0007312
* Changed synonym scope of GO:0007312 from "Related" to "Exact"
* Added synonym "oocyte nucleus migration during oocyte axis determination (sensu Insecta)" to GO:0007312
* added secondary id GO:0048125 to GO:0007313
* Added definition dbxref GOC:mtg_sensu to GO:0007313
* Added synonym "maternal determination of dorsal/ventral axis, oocyte, soma encoded (sensu Insecta)" to GO:0007313
* added secondary id GO:0048112 to GO:0007314
* Added definition dbxref GOC:mtg_sensu to GO:0007314
* Added synonym "oocyte anterior/posterior axis determination (sensu Insecta)" to GO:0007314
* added secondary id GO:0048113 to GO:0007315
* Added synonym "pole plasm assembly (sensu Insecta)" to GO:0007315
* Deleted GO:0007316 --part_of--> GO:0048113
* Copied GO:0007316 to GO:0007315 with type part_of
* Deleted GO:0007318 --part_of--> GO:0048113
* Copied GO:0007318 to GO:0007315 with type part_of
* added secondary id GO:0048129 to GO:0008103
* Added definition dbxref GOC:mtg_sensu to GO:0008103
* Added synonym "oocyte microtubule cytoskeleton polarization (sensu Insecta)" to GO:0008103
* Added definition dbxref GOC:mtg_sensu to GO:0009994
* Set definition of GO:0016211 to "Catalysis of the ligation of ammonia (NH3) to another substance via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate."
* Added definition dbxref GOC:jl to GO:0016211
* added secondary id GO:0048130 to GO:0016325
* Changed definition of GO:0016325 from "Formation and maintenance of a polarized microtubule array originating from a microtubule-organizing center (MTOC) in the oocyte. The MTOC nucleates a microtubule network that extends through the ring canals into the 15 nurse cells of the cyst." to "Formation and maintenance of a polarized microtubule array originating from a microtubule-organizing center (MTOC) in the oocyte."
* Added definition dbxref GOC:mtg_sensu to GO:0016325
* Added synonym "oocyte microtubule cytoskeleton organisation (sensu Insecta)" to GO:0016325
* Changed synonym scope of GO:0016325 from "Related" to "Exact"
* Added synonym "oocyte microtubule cytoskeleton organization (sensu Insecta)" to GO:0016325
* Changed synonym scope of GO:0016325 from "Related" to "Exact"
* Set definition of GO:0016878 to "Catalysis of the ligation of an acid and a thiol via a carbon-sulfur bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate."
* Added definition dbxref GOC:jl to GO:0016878
* Set definition of GO:0016880 to "Catalysis of the ligation of an acid to ammonia (NH3) or an amide via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate."
* Added definition dbxref GOC:jl to GO:0016880
* Set definition of GO:0016881 to "Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate."
* Added definition dbxref GOC:jl to GO:0016881
* Changed name of GO:0018860 from "anthranilate--CoA ligase activity" to "anthranilate-CoA ligase activity"
* Deleted synonym "anthranilate-CoA ligase activity" from GO:0018860
* Added synonym "anthranilate--CoA ligase activity" to GO:0018860
* Changed synonym scope of GO:0018860 from "Related" to "Exact"
* Added definition dbxref GOC:mtg_sensu to GO:0022605
* Changed name of GO:0030381 from "eggshell pattern formation (sensu Insecta)" to "chorion-containing eggshell pattern formation"
* Changed definition of GO:0030381 from "The regionalization process that gives rise to the pattern of cell differentiation in the eggshell. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." to "The regionalization process that gives rise to the structural pattern of a chorion-containing eggshell such as those found in insects."
* Added definition dbxref GOC:mtg_sensu to GO:0030381
* Added synonym "eggshell pattern formation (sensu Insecta)" to GO:0030381
* Changed synonym scope of GO:0030381 from "Related" to "Exact"
* Added definition dbxref GOC:mtg_sensu to GO:0030703
* Deleted GO:0030704 --part_of--> GO:0030703
* Copied GO:0030704 to GO:0048477 with type part_of
* Changed name of GO:0030706 from "oocyte differentiation (sensu Insecta)" to "germarium-derived oocyte differentiation"
* Changed definition of GO:0030706 from "The process whereby one relatively unspecialized immature cystocyte of the germ-line cyst acquires the specialized features of an oocyte. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." to "The process whereby one relatively unspecialized immature cystocyte of the germ-line cyst acquires the specialized features of an oocyte."
* Added definition dbxref GOC:mtg_sensu to GO:0030706
* Added synonym "oocyte differentiation (sensu Insecta)" to GO:0030706
* Changed synonym scope of GO:0030706 from "Related" to "Exact"
* Changed name of GO:0030708 from "female germ-line cyst encapsulation (sensu Insecta)" to "germarium-derived female germ-line cyst encapsulation"
* Changed definition of GO:0030708 from "Formation of a single follicular epithelium around the germ-line derived cells of a cyst formed in the female gonad. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." to "Formation of a single follicular epithelium around the germ-line derived cells of a cyst formed in the female gonad."
* Added definition dbxref GOC:mtg_sensu to GO:0030708
* Added synonym "female germ-line cyst encapsulation (sensu Insecta)" to GO:0030708
* Changed synonym scope of GO:0030708 from "Related" to "Exact"
* Changed name of GO:0030715 from "oocyte growth (sensu Insecta)" to "oocyte growth in germarium-derived egg chamber"
* Changed definition of GO:0030715 from "The increase in volume of an oocyte during the growth phase of the egg chamber. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." to "The increase in volume of an oocyte during the growth phase of the egg chamber, once the egg chamber has left the germarium."
* Added definition dbxref GOC:mtg_sensu to GO:0030715
* Added synonym "oocyte growth (sensu Insecta)" to GO:0030715
* Changed synonym scope of GO:0030715 from "Related" to "Exact"
* Deleted GO:0030719 --part_of--> GO:0048113
* Copied GO:0030719 to GO:0007315 with type part_of
* Changed name of GO:0030720 from "oocyte localization during oogenesis" to "oocyte localization during germarium-derived egg chamber formation"
* Added definition dbxref GOC:mtg_sensu to GO:0030720
* Added synonym "oocyte localization during oogenesis" to GO:0030720
* added secondary id GO:0048126 to GO:0030722
* Changed definition of GO:0030722 from "The directed movement of the nucleus to a specific location within the cell during the establishment and maintenance of the axes of the oocyte." to "MERGED DEFINITION:
TARGET DEFINITION: The directed movement of the nucleus to a specific location within the cell during the establishment and maintenance of the axes of the oocyte. In the insect oocyte, for example, the nucleus is repositioned to a dorso-anterior position."
* Added definition dbxref GOC:mtg_sensu to GO:0030722
* Added synonym "establishment of localization of oocyte nucleus during oocyte axis determination (sensu Insecta)" to GO:0030722
* Changed synonym scope of GO:0030722 from "Related" to "Exact"
* Added synonym "establishment of oocyte nucleus localization during oocyte axis determination (sensu Insecta)" to GO:0030722
* Changed synonym scope of GO:0030722 from "Related" to "Exact"
* Added synonym "nucleus positioning in oocyte during oocyte axis determination (sensu Insecta)" to GO:0030722
* Changed synonym scope of GO:0030722 from "Related" to "Exact"
* Added synonym "oocyte axis determination, establishment of localization of nucleus (sensu Insecta)" to GO:0030722
* Changed synonym scope of GO:0030722 from "Related" to "Exact"
* Added synonym "oocyte axis determination, establishment of oocyte nucleus localization (sensu Insecta)" to GO:0030722
* Changed synonym scope of GO:0030722 from "Related" to "Exact"
* Added synonym "oocyte axis determination, establishment of position of nucleus (sensu Insecta)" to GO:0030722
* Changed synonym scope of GO:0030722 from "Related" to "Exact"
* Added synonym "oocyte axis determination, positioning of nucleus (sensu Insecta)" to GO:0030722
* Changed synonym scope of GO:0030722 from "Related" to "Exact"
* Added synonym "oocyte nucleus positioning during oocyte axis determination (sensu Insecta)" to GO:0030722
* Changed synonym scope of GO:0030722 from "Related" to "Exact"
* Changed name of GO:0030727 from "female germ-line cyst formation (sensu Insecta)" to "germarium-derived female germ-line cyst formation"
* Changed definition of GO:0030727 from "Formation of a cluster of germ-line cells, in the female gonad, derived from a single founder cell (cystoblast). As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." to "Formation of a cluster of germ-line cells, in the female gonad, derived from a single founder cell (cystoblast)."
* Added definition dbxref GOC:mtg_sensu to GO:0030727
* Added synonym "female germ-line cyst formation (sensu Insecta)" to GO:0030727
* Changed synonym scope of GO:0030727 from "Related" to "Exact"
* added secondary id GO:0048127 to GO:0042070
* Changed definition of GO:0042070 from "Maintenance of the oocyte nucleus in a particular position within the cell during the establishment and maintenance of the axes of the oocyte." to "MERGED DEFINITION:
TARGET DEFINITION: Maintenance of the oocyte nucleus in a particular position within the cell during the establishment and maintenance of the axes of the oocyte.
--------------------
SOURCE DEFINITION: Maintenance of the oocyte nucleus in its anterior-dorsal position in the egg chamber during the establishment and maintenance of the axes of the oocyte. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)."
* Added synonym "maintenance of oocyte nucleus localization during oocyte axis determination (sensu Insecta)" to GO:0042070
* Changed synonym scope of GO:0042070 from "Related" to "Exact"
* Added synonym "maintenance of oocyte nucleus position during oocyte axis determination (sensu Insecta)" to GO:0042070
* Changed synonym scope of GO:0042070 from "Related" to "Exact"
* Added synonym "oocyte axis determination, maintenance of oocyte nucleus localization (sensu Insecta)" to GO:0042070
* Changed synonym scope of GO:0042070 from "Related" to "Exact"
* Added synonym "oocyte axis determination, maintenance of oocyte nucleus position (sensu Insecta)" to GO:0042070
* Changed synonym scope of GO:0042070 from "Related" to "Exact"
* Added synonym "oocyte axis determination, oocyte nucleus anchoring (sensu Insecta)" to GO:0042070
* Changed synonym scope of GO:0042070 from "Related" to "Exact"
* Added synonym "oocyte nucleus anchoring during oocyte axis determination (sensu Insecta)" to GO:0042070
* Changed synonym scope of GO:0042070 from "Related" to "Exact"
* Added GO:0043738 to category gosubset_prok
* Added GO:0043740 to category gosubset_prok
* Added GO:0043742 to category gosubset_prok
* Added GO:0043751 to category gosubset_prok
* Deleted GO:0045450 --part_of--> GO:0048112
* Copied GO:0045450 to GO:0007314 with type part_of
* Deleted GO:0048110 --part_of--> GO:0009993
* Deleted GO:0048110 --OBO_REL:is_a--> GO:0007308
* Deleted GO:0048130 --part_of--> GO:0048110
* Deleted GO:0048111 --part_of--> GO:0048110
* Destroyed object GO:0048110
* Deleted GO:0048111 --OBO_REL:is_a--> GO:0007309
* Deleted GO:0048111 --part_of--> GO:0048110
* Deleted GO:0048129 --part_of--> GO:0048111
* Deleted GO:0048112 --part_of--> GO:0048111
* Deleted GO:0048123 --part_of--> GO:0048111
* Destroyed object GO:0048111
* Deleted GO:0048112 --OBO_REL:is_a--> GO:0007314
* Deleted GO:0048112 --part_of--> GO:0048111
* Deleted GO:0045450 --part_of--> GO:0048112
* Deleted GO:0048113 --part_of--> GO:0048112
* Destroyed object GO:0048112
* Deleted GO:0048113 --part_of--> GO:0048112
* Deleted GO:0048113 --OBO_REL:is_a--> GO:0007315
* Deleted GO:0007316 --part_of--> GO:0048113
* Deleted GO:0030719 --part_of--> GO:0048113
* Deleted GO:0007318 --part_of--> GO:0048113
* Destroyed object GO:0048113
* Deleted GO:0048123 --OBO_REL:is_a--> GO:0007310
* Deleted GO:0048123 --part_of--> GO:0048111
* Deleted GO:0048125 --OBO_REL:is_a--> GO:0048123
* Deleted GO:0051662 --part_of--> GO:0048123
* Deleted GO:0048124 --OBO_REL:is_a--> GO:0048123
* Destroyed object GO:0048123
* Deleted GO:0048124 --OBO_REL:is_a--> GO:0007311
* Deleted GO:0048124 --OBO_REL:is_a--> GO:0048123
* Destroyed object GO:0048124
* Deleted GO:0048125 --OBO_REL:is_a--> GO:0048123
* Deleted GO:0048125 --OBO_REL:is_a--> GO:0007313
* Destroyed object GO:0048125
* Deleted GO:0048126 --part_of--> GO:0051662
* Deleted GO:0048126 --OBO_REL:is_a--> GO:0030722
* Deleted GO:0048128 --OBO_REL:is_a--> GO:0048126
* Destroyed object GO:0048126
* Deleted GO:0048127 --part_of--> GO:0051662
* Deleted GO:0048127 --OBO_REL:is_a--> GO:0042070
* Destroyed object GO:0048127
* Deleted GO:0048128 --OBO_REL:is_a--> GO:0007312
* Deleted GO:0048128 --OBO_REL:is_a--> GO:0048126
* Destroyed object GO:0048128
* Deleted GO:0048129 --part_of--> GO:0048111
* Deleted GO:0048129 --part_of--> GO:0048130
* Deleted GO:0048129 --OBO_REL:is_a--> GO:0008103
* Destroyed object GO:0048129
* Deleted GO:0048130 --OBO_REL:is_a--> GO:0016325
* Deleted GO:0048130 --part_of--> GO:0048110
* Deleted GO:0048129 --part_of--> GO:0048130
* Destroyed object GO:0048130
* added secondary id GO:0048141 to GO:0048132
* Added definition dbxref GOC:mtg_sensu to GO:0048132
* Added synonym "female germ-line stem cell division (sensu Insecta)" to GO:0048132
* Changed synonym scope of GO:0048132 from "Related" to "Exact"
* Added synonym "female germ-line stem cell renewal (sensu Insecta)" to GO:0048132
* Copied GO:0048132 to GO:0009993 with type part_of
* Deleted GO:0048141 --part_of--> GO:0009993
* Deleted GO:0048141 --OBO_REL:is_a--> GO:0048132
* Destroyed object GO:0048141
* Changed name of GO:0048142 from "cystoblast division (sensu Insecta)" to "germarium-derived cystoblast division"
* Changed definition of GO:0048142 from "The four rounds of incomplete mitosis undergone by the cystoblast to form a 16-cell cyst. Within the cyst, one cell differentiates into an oocyte while the rest become nurse cells. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557)." to "The four rounds of incomplete mitosis undergone by the cystoblast to form a 16-cell cyst. Within the cyst, one cell differentiates into an oocyte while the rest become nurse cells."
* Added definition dbxref GOC:mtg_sensu to GO:0048142
* Added synonym "cystoblast division (sensu Insecta)" to GO:0048142
* Changed synonym scope of GO:0048142 from "Related" to "Exact"
* Deleted GO:0048157 --OBO_REL:is_a--> GO:0048477
* Deleted GO:0048163 --part_of--> GO:0048157
* Deleted GO:0048165 --part_of--> GO:0048157
* Deleted GO:0048166 --part_of--> GO:0048157
* Deleted GO:0048162 --part_of--> GO:0048157
* Deleted GO:0048158 --part_of--> GO:0048157
* Deleted GO:0048160 --part_of--> GO:0048157
* Deleted GO:0048161 --part_of--> GO:0048157
* Deleted GO:0048159 --part_of--> GO:0048157
* Deleted GO:0048164 --part_of--> GO:0048157
* Destroyed object GO:0048157
* Changed name of GO:0048158 from "oogonium stage, oogenesis (sensu Mammalia)" to "oogonium stage, oogenesis"
* Changed definition of GO:0048158 from "The stage in mammalian oogenesis when the primordial germ cell is hardly distinguishable from other cortical cells of the ovary. As in, but not restricted to, mammals (Mammalia, ncbi_taxonomy_id:40674)." to "The stage in mammalian oogenesis when the primordial germ cell is hardly distinguishable from other cortical cells of the ovary."
* Added definition dbxref GOC:mtg_sensu to GO:0048158
* Added synonym "oogonium stage, oogenesis (sensu Mammalia)" to GO:0048158
* Changed synonym scope of GO:0048158 from "Related" to "Exact"
* Deleted GO:0048158 --part_of--> GO:0048157
* Copied GO:0048158 to GO:0048477 with type part_of
* Changed definition of GO:0048159 from "The stage in mammalian oogenesis when the oocyte has a nucleus slightly larger than those of the adjacent cells and is surrounded by a layer of loose squamous epithelial cells." to "The stage in oogenesis when the oocyte has a nucleus slightly larger than those of the adjacent cells and is surrounded by a layer of loose squamous epithelial cells."
* Added definition dbxref GOC:mtg_sensu to GO:0048159
* Deleted GO:0048159 --part_of--> GO:0048157
* Copied GO:0048159 to GO:0048477 with type part_of
* Changed name of GO:0048160 from "primary follicle stage, oogenesis (sensu Mammalia)" to "primary follicle stage, oogenesis"
* Changed definition of GO:0048160 from "The stage in oogenesis when a single layer of cuboidal follicle cells surrounds the oocyte. The oocyte nucleus is large. As in, but not restricted to, mammals (Mammalia, ncbi_taxonomy_id:40674)." to "The stage in oogenesis when a single layer of cuboidal follicle cells surrounds the oocyte. The oocyte nucleus is large."
* Added definition dbxref GOC:mtg_sensu to GO:0048160
* Added synonym "primary follicle stage, oogenesis (sensu Mammalia)" to GO:0048160
* Changed synonym scope of GO:0048160 from "Related" to "Exact"
* Deleted GO:0048160 --part_of--> GO:0048157
* Copied GO:0048160 to GO:0048477 with type part_of
* Changed name of GO:0048161 from "double layer follicle stage, oogenesis (sensu Mammalia)" to "double layer follicle stage, oogenesis"
* Changed definition of GO:0048161 from "The stage in oogenesis when a double layer of distinct follicle cells surrounds the oocyte. As in, but not restricted to, mammals (Mammalia, ncbi_taxonomy_id:40674)." to "The stage in oogenesis when a double layer of distinct follicle cells surrounds the oocyte."
* Added definition dbxref GOC:mtg_sensu to GO:0048161
* Added synonym "double layer follicle stage, oogenesis (sensu Mammalia)" to GO:0048161
* Changed synonym scope of GO:0048161 from "Related" to "Exact"
* Deleted GO:0048161 --part_of--> GO:0048157
* Copied GO:0048161 to GO:0048477 with type part_of
* Changed name of GO:0048162 from "multi-layer follicle stage, oogenesis (sensu Mammalia)" to "multi-layer follicle stage, oogenesis"
* Changed definition of GO:0048162 from "The stage in oogenesis when many layers of follicle cells surround the oocyte. There is a yolk nucleus (Balbiani's Body) near the germinal vesicle. As in, but not restricted to, mammals (Mammalia, ncbi_taxonomy_id:40674)." to "The stage in oogenesis when many layers of follicle cells surround the oocyte. There is a yolk nucleus (Balbiani's Body) near the germinal vesicle."
* Added definition dbxref GOC:mtg_sensu to GO:0048162
* Added synonym "multi-layer follicle stage, oogenesis (sensu Mammalia)" to GO:0048162
* Changed synonym scope of GO:0048162 from "Related" to "Exact"
* Deleted GO:0048162 --part_of--> GO:0048157
* Copied GO:0048162 to GO:0048477 with type part_of
* Changed name of GO:0048163 from "scattered antral spaces stage, oogenesis (sensu Mammalia)" to "scattered antral spaces stage, oogenesis"
* Changed definition of GO:0048163 from "The stage in oogenesis when antral spaces begin to form in the follicle cells. Mitochondria form centers for yolk concentration. As in, but not restricted to, mammals (Mammalia, ncbi_taxonomy_id:40674)." to "The stage in oogenesis when antral spaces begin to form in the follicle cells. Mitochondria form centers for yolk concentration."
* Added definition dbxref GOC:mtg_sensu to GO:0048163
* Added synonym "scattered antral spaces stage, oogenesis (sensu Mammalia)" to GO:0048163
* Changed synonym scope of GO:0048163 from "Related" to "Exact"
* Deleted GO:0048163 --part_of--> GO:0048157
* Copied GO:0048163 to GO:0048477 with type part_of
* Changed name of GO:0048164 from "distinct antral spaces stage, oogenesis (sensu Mammalia)" to "distinct antral spaces stage, oogenesis"
* Changed definition of GO:0048164 from "The stage in oogenesis when the antral spaces become distinct and the first polar body forms. As in, but not restricted to, mammals (Mammalia, ncbi_taxonomy_id:40674)." to "The stage in oogenesis when the antral spaces become distinct and the first polar body forms."
* Added definition dbxref GOC:mtg_sensu to GO:0048164
* Added synonym "distinct antral spaces stage, oogenesis (sensu Mammalia)" to GO:0048164
* Changed synonym scope of GO:0048164 from "Related" to "Exact"
* Deleted GO:0048164 --part_of--> GO:0048157
* Copied GO:0048164 to GO:0048477 with type part_of
* Changed name of GO:0048165 from "fused antrum stage, oogenesis (sensu Mammalia)" to "fused antrum stage, oogenesis"
* Changed definition of GO:0048165 from "The stage in oogenesis when the antral spaces fuse to form a single antral space. The oocyte is suspended in the cumulus oophorous and the first polar body in the peri