[go-diff] GO update 11/13/2007

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_edit.obo version 5.542 by 5.544

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0014075
* Created object of type obo:TERM with id GO:0055087
* Created object of type obo:TERM with id GO:0055088
* Created object of type obo:TERM with id GO:0055089
* Created object of type obo:TERM with id GO:0055090
* Created object of type obo:TERM with id GO:0055091
* Created object of type obo:TERM with id GO:0055092
* Created object of type obo:TERM with id GO:0055093
* Populated new object GO:0014075 (macro)
  * Changed name of GO:0014075 from "<new term>" to "response to amine stimulus"
  * Set definition of GO:0014075 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amine stimulus. An amine is a compound formally derived from ammonia by replacing one, two or three hydrogen atoms by hydrocarbyl groups."
  * Added definition dbxref CHEBI:32952 to GO:0014075
  * Added definition dbxref GOC:response_to_drug to GO:0014075
  * Copied GO:0014075 to GO:0010033 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0014075
* Populated new object GO:0055087 (macro)
  * Changed name of GO:0055087 from "<new term>" to "Ski complex"
  * Set definition of GO:0055087 to "A heterotrimeric protein complex that regulates RNA degradation by the exosome complex."
  * Added definition dbxref GOC:mcc to GO:0055087
  * Added definition dbxref PMID:10744028 to GO:0055087
  * Added definition dbxref PMID:15703439 to GO:0055087
  * Added definition dbxref PMID:16043509 to GO:0055087
  * Copied GO:0055087 to GO:0044444 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0055087
* Populated new object GO:0055088 (macro)
  * Changed name of GO:0055088 from "<new term>" to "lipid homeostasis"
  * Set definition of GO:0055088 to "Any of the processes involved in the maintenance of an internal equilibrium of lipid within an organism or cell."
  * Added definition dbxref GOC:rl to GO:0055088
  * Copied GO:0055088 to GO:0048878 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0055088
* Populated new object GO:0055089 (macro)
  * Changed name of GO:0055089 from "<new term>" to "fatty acid homeostasis"
  * Set definition of GO:0055089 to "Any of the processes involved in the maintenance of an internal equilibrium of fatty acid within an organism or cell."
  * Added definition dbxref GOC:rl to GO:0055089
  * Copied GO:0055089 to GO:0055088 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0055089
* Populated new object GO:0055090 (macro)
  * Changed name of GO:0055090 from "<new term>" to "acylglycerol homeostasis"
  * Set definition of GO:0055090 to "Any of the processes involved in the maintenance of an internal equilibrium of acylglycerol within an organism or cell."
  * Added definition dbxref GOC:rl to GO:0055090
  * Added synonym "glyceride homeostasis" to GO:0055090
  * Changed synonym scope of GO:0055090 from "Related" to "Exact"
  * Copied GO:0055090 to GO:0055088 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0055090
* Populated new object GO:0055091 (macro)
  * Changed name of GO:0055091 from "<new term>" to "phospholipid homeostasis"
  * Set definition of GO:0055091 to "Any of the processes involved in the maintenance of an internal equilibrium of phospholipid within an organism or cell."
  * Added definition dbxref GOC:rl to GO:0055091
  * Copied GO:0055091 to GO:0055088 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0055091
* Populated new object GO:0055092 (macro)
  * Changed name of GO:0055092 from "<new term>" to "sterol homeostasis"
  * Set definition of GO:0055092 to "Any of the processes involved in the maintenance of an internal equilibrium of sterol within an organism or cell."
  * Added definition dbxref GOC:rl to GO:0055092
  * Copied GO:0055092 to GO:0055088 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0055092
* Populated new object GO:0055093 (macro)
  * Changed name of GO:0055093 from "<new term>" to "response to hyperoxia"
  * Set definition of GO:0055093 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating increased oxygen tension."
  * Added definition dbxref GOC:kva to GO:0055093
  * Added synonym "response to hyperoxic stress" to GO:0055093
  * Changed synonym scope of GO:0055093 from "Related" to "Exact"
  * Added synonym "response to increased oxygen tension" to GO:0055093
  * Changed synonym scope of GO:0055093 from "Related" to "Exact"
  * Copied GO:0055093 to GO:0006950 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0055093
* Added definition dbxref CHEBI:2679 to GO:0001975
* Added definition dbxref GOC:response_to_drug to GO:0001975
* Deleted GO:0001975 --OBO_REL:is_a--> GO:0042493
* Copied GO:0001975 to GO:0014075 with type OBO_REL:is_a
* Changed definition of GO:0002225 from "Any process that activates or increases the frequency, rate, or extent of ." to "Any process that activates or increases the frequency, rate, or extent of antimicrobial peptide production."
* Changed definition of GO:0002800 from "Any process that modulates the frequency, rate, or extent of ." to "Any process that modulates the frequency, rate, or extent of antifungal peptide secretion."
* Changed definition of GO:0002801 from "Any process that stops, prevents, or reduces the frequency, rate, or extent of ." to "Any process that stops, prevents, or reduces the frequency, rate, or extent of antifungal peptide secretion."
* Changed definition of GO:0002802 from "Any process that activates or increases the frequency, rate, or extent of ." to "Any process that activates or increases the frequency, rate, or extent of antifungal peptide secretion."
* Added synonym "poly(A)-specific RNase activity" to GO:0004535
* Changed synonym scope of GO:0004535 from "Related" to "Exact"
* Added synonym "tRNA-specific RNase activity" to GO:0004549
* Changed synonym scope of GO:0004549 from "Related" to "Exact"
* Changed synonym scope of GO:0005179 from "Narrow" to "Related"
* Changed synonym scope of GO:0005179 from "Narrow" to "Related"
* Changed synonym scope of GO:0005179 from "Narrow" to "Related"
* Deleted GO:0008655 --OBO_REL:is_a--> GO:0006139
* Copied GO:0008655 to GO:0006206 with type OBO_REL:is_a
* Added synonym "Enterobacter RNase activity" to GO:0008847
* Changed synonym scope of GO:0008847 from "Related" to "Exact"
* Added synonym "RNase II activity" to GO:0008859
* Changed synonym scope of GO:0008859 from "Related" to "Exact"
* Added synonym "bidentate RNase III activity" to GO:0016443
* Changed synonym scope of GO:0016443 from "Related" to "Exact"
* Changed name of GO:0017148 from "negative regulation of protein biosynthetic process" to "negative regulation of translation"
* Added synonym "negative regulation of protein biosynthetic process" to GO:0017148
* Changed synonym scope of GO:0017148 from "Related" to "Exact"
* Changed definition of GO:0032221 from "A eukaryotically conserved histone deacetylse complex which deacetylates histones preferentially in
promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; homologs thereof in other species)." to "A eukaryotically conserved histone deacetylse complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; homologs thereof in other species)."
* Changed definition of GO:0033698 from "A histone deacetylase complex which deacetylates histones across gene coding regions. Composed of a catalytic histone deacetylase subunit, an Sds-3 family protein, a SIN3 family co-repressor, a WD repeat protein, and a zf- PHD finger (Clr6, Sds3, Pst1, Prw1, Png2 in Schizosaccharomyces
pombe)." to "A histone deacetylase complex which deacetylates histones across gene coding regions. Composed of a catalytic histone deacetylase subunit, an Sds-3 family protein, a SIN3 family co-repressor, a WD repeat protein, and a zf- PHD finger (Clr6, Sds3, Pst1, Prw1, Png2 in Schizosaccharomyces pombe)."
* Added definition dbxref CHEBI:17688 to GO:0035094
* Added definition dbxref GOC:response_to_drug to GO:0035094
* Deleted GO:0035094 --OBO_REL:is_a--> GO:0042493
* Copied GO:0035094 to GO:0043279 with type OBO_REL:is_a
* Copied GO:0035094 to GO:0014070 with type OBO_REL:is_a
* Deleted GO:0042632 --OBO_REL:is_a--> GO:0048878
* Copied GO:0042632 to GO:0055092 with type OBO_REL:is_a
* Changed definition of GO:0043200 from "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus." to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups."
* Added definition dbxref CHEBI:33709 to GO:0043200
* Added definition dbxref GOC:response_to_drug to GO:0043200
* Deleted GO:0043200 --OBO_REL:is_a--> GO:0010033
* Copied GO:0043200 to GO:0014075 with type OBO_REL:is_a
* Copied GO:0043504 to GO:0000002 with type part_of
* Added synonym "RNase T1 activity" to GO:0046589
* Changed synonym scope of GO:0046589 from "Related" to "Exact"
* Added definition dbxref GOC:response_to_drug to GO:0046677
* Deleted GO:0046677 --OBO_REL:is_a--> GO:0042493
* Copied GO:0046677 to GO:0042221 with type OBO_REL:is_a
* Changed synonym scope of GO:0051091 from "Narrow" to "Exact"