[go-diff] GO update 11/14/2007

Wed Nov 14 21:30:44 PST 2007

OBODIFF of gene_ontology_edit.obo version 5.544 by 5.547

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010463
* Created object of type obo:TERM with id GO:0010464
* Created object of type obo:TERM with id GO:0010465
* Created object of type obo:TERM with id GO:0010466
* Created object of type obo:TERM with id GO:0055094
* Created object of type obo:TERM with id GO:0055095
* Created object of type obo:TERM with id GO:0055096
* Created object of type obo:TERM with id GO:0055097
* Created object of type obo:TERM with id GO:0055098
* Created object of type obo:TERM with id GO:0055099
* Populated new object GO:0010463 (macro)
  * Changed name of GO:0010463 from "<new term>" to "mesenchymal cell proliferation"
  * Set definition of GO:0010463 to "The multiplication or reproduction of cells, resulting in the expansion of a mesenchymal cell population. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets."
  * Added definition dbxref GOC:dph to GO:0010463
  * Added definition dbxref GOC:tb to GO:0010463
  * Copied GO:0010463 to GO:0008283 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010463
* Populated new object GO:0010464 (macro)
  * Changed name of GO:0010464 from "<new term>" to "regulation of mesenchymal cell proliferation"
  * Set definition of GO:0010464 to "Any process that modulates the frequency, rate or extent of mesenchymal cell proliferation. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets."
  * Added definition dbxref GOC:dph to GO:0010464
  * Added definition dbxref GOC:tb to GO:0010464
  * Copied GO:0010464 to GO:0010463 with type part_of
  * Copied GO:0010464 to GO:0042127 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010464
* Populated new object GO:0010465 (macro)
  * Changed name of GO:0010465 from "<new term>" to "nerve growth factor receptor activity"
  * Set definition of GO:0010465 to "Combining with nerve growth factor, to block apoptosis in neurons and promote nerve growth, or to initiate a change in cell activity."
  * Added definition dbxref GOC:dph to GO:0010465
  * Added definition dbxref GOC:tb to GO:0010465
  * Copied GO:0010465 to GO:0005030 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010465
* Populated new object GO:0010466 (macro)
  * Changed name of GO:0010466 from "<new term>" to "negative regulation of peptidase activity"
  * Set definition of GO:0010466 to "Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide linkages within proteins."
  * Added definition dbxref GOC:dph to GO:0010466
  * Added definition dbxref GOC:tb to GO:0010466
  * Copied GO:0010466 to GO:0052547 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010466
* Populated new object GO:0055094 (macro)
  * Changed name of GO:0055094 from "<new term>" to "response to lipoprotein stimulus"
  * Set definition of GO:0055094 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipoprotein stimulus."
  * Added definition dbxref GOC:rl to GO:0055094
  * Copied GO:0055094 to GO:0009719 with type OBO_REL:is_a
  * Copied GO:0055094 to GO:0010033 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0055094
* Populated new object GO:0055095 (macro)
  * Changed name of GO:0055095 from "<new term>" to "lipoprotein mediated signaling"
  * Set definition of GO:0055095 to "A series of molecular signals mediated by the detection of lipoprotein."
  * Added definition dbxref GOC:rl to GO:0055095
  * Added synonym "lipoprotein mediated signalling " to GO:0055095
  * Changed synonym scope of GO:0055095 from "Related" to "Exact"
  * Copied GO:0055095 to GO:0055094 with type part_of
  * Copied GO:0055095 to GO:0007242 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0055095
* Populated new object GO:0055096 (macro)
  * Changed name of GO:0055096 from "<new term>" to "low density lipoprotein mediated signaling"
  * Set definition of GO:0055096 to "A series of molecular signals mediated by the detection of low density lipoprotein."
  * Added definition dbxref GOC:rl to GO:0055096
  * Added synonym "low density lipoprotein mediated signalling" to GO:0055096
  * Changed synonym scope of GO:0055096 from "Related" to "Exact"
  * Copied GO:0055096 to GO:0055095 with type OBO_REL:is_a
  * Copied GO:0055096 to GO:0055098 with type part_of
  * Assigned namespace "biological_process" to GO:0055096
* Populated new object GO:0055097 (macro)
  * Changed name of GO:0055097 from "<new term>" to "high density lipoprotein mediated signaling"
  * Set definition of GO:0055097 to "A series of molecular signals mediated by the detection of high density lipoprotein."
  * Added definition dbxref GOC:rl to GO:0055097
  * Added synonym "high density lipoprotein mediated signalling" to GO:0055097
  * Changed synonym scope of GO:0055097 from "Related" to "Exact"
  * Copied GO:0055097 to GO:0055095 with type OBO_REL:is_a
  * Copied GO:0055097 to GO:0055099 with type part_of
  * Assigned namespace "biological_process" to GO:0055097
* Populated new object GO:0055098 (macro)
  * Changed name of GO:0055098 from "<new term>" to "response to low density lipoprotein stimulus"
  * Set definition of GO:0055098 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low density lipoprotein stimulus."
  * Added definition dbxref GOC:rl to GO:0055098
  * Copied GO:0055098 to GO:0055094 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0055098
* Populated new object GO:0055099 (macro)
  * Changed name of GO:0055099 from "<new term>" to "response to high density lipoprotein stimulus"
  * Set definition of GO:0055099 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high density lipoprotein stimulus."
  * Added definition dbxref GOC:rl to GO:0055099
  * Copied GO:0055099 to GO:0055094 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0055099
* Copied GO:0002053 to GO:0010464 with type OBO_REL:is_a
* Added synonym "monophenol oxygenase" to GO:0004503
* Added general dbxref PMID:2494997 to synonym monophenol oxygenase of GO:0004503
* Changed synonym scope of GO:0004503 from "Related" to "Exact"
* Deleted GO:0010462 --part_of--> GO:0008086
* Changed name of GO:0032771 from "regulation of monophenol oxygenase activity" to "regulation of monophenol monooxygenase activity"
* Changed definition of GO:0032771 from "Any process that modulates the activity of the enzyme monophenol oxygenase." to "Any process that modulates the activity of the enzyme monophenol monooxygenase. Monophenol monooxygenase catalyzes the reaction: L-tyrosine + L-DOPA + O2 = L-DOPA + DOPAquinone + H2O."
* Added definition dbxref GOC:dph to GO:0032771
* Added definition dbxref GOC:tb to GO:0032771
* Added definition dbxref PMID:2494997 to GO:0032771
* Added synonym "regulation of monophenol oxygenase activity" to GO:0032771
* Added general dbxref GOC:tb to synonym regulation of monophenol oxygenase activity of GO:0032771
* Added general dbxref GOC:dph to synonym regulation of monophenol oxygenase activity of GO:0032771
* Changed synonym scope of GO:0032771 from "Related" to "Exact"
* Changed name of GO:0032772 from "negative regulation of monophenol oxygenase activity" to "negative regulation of monophenol monooxygenase activity"
* Changed definition of GO:0032772 from "Any process that stops or reduces the activity of the enzyme monophenol oxygenase." to "Any process that stops or reduces the activity of the enzyme monophenol monooxygenase. Monophenol monooxygenase catalyzes the reaction: L-tyrosine + L-DOPA + O2 = L-DOPA + DOPAquinone + H2O."
* Added definition dbxref GOC:dph to GO:0032772
* Added definition dbxref GOC:tb to GO:0032772
* Added synonym "negative regulation of monophenol oxygenase activity" to GO:0032772
* Added general dbxref GOC:tb to synonym negative regulation of monophenol oxygenase activity of GO:0032772
* Added general dbxref PMID:2494997 to synonym negative regulation of monophenol oxygenase activity of GO:0032772
* Added general dbxref GOC:dph to synonym negative regulation of monophenol oxygenase activity of GO:0032772
* Changed synonym scope of GO:0032772 from "Related" to "Exact"
* Changed name of GO:0032773 from "positive regulation of monophenol oxygenase activity" to "positive regulation of monophenol monooxygenase activity"
* Changed definition of GO:0032773 from "Any process that activates or increases the activity of the enzyme monophenol oxygenase." to "Any process that activates or increases the activity of the enzyme monophenol oxygenase. Monophenol monooxygenase catalyzes the reaction: L-tyrosine + L-DOPA + O2 = L-DOPA + DOPAquinone + H2O."
* Added definition dbxref GOC:dph to GO:0032773
* Added definition dbxref GOC:tb to GO:0032773
* Added definition dbxref PMID:2494997 to GO:0032773
* Added synonym "positive regulation of monophenol oxygenase activity" to GO:0032773
* Added general dbxref GOC:tb to synonym positive regulation of monophenol oxygenase activity of GO:0032773
* Added general dbxref PMID:2494997 to synonym positive regulation of monophenol oxygenase activity of GO:0032773
* Added general dbxref GOC:dph to synonym positive regulation of monophenol oxygenase activity of GO:0032773
* Changed synonym scope of GO:0032773 from "Related" to "Exact"
* Deleted GO:0033139 --OBO_REL:is_a--> GO:0001932
* Deleted GO:0033139 --OBO_REL:is_a--> GO:0051246
* Copied GO:0033139 to GO:0033135 with type OBO_REL:is_a
* Copied GO:0046902 to GO:0065008 with type OBO_REL:is_a
* Changed synonym scope of GO:0051091 from "Narrow" to "Exact"
* Deleted GO:0051204 --part_of--> GO:0007006
* Copied GO:0051204 to GO:0007006 with type OBO_REL:is_a
* Deleted GO:0051394 --part_of--> GO:0048011
* Deleted GO:0051394 --OBO_REL:is_a--> GO:0009966
* Copied GO:0051394 to GO:0051386 with type OBO_REL:is_a
* Copied GO:0051394 to GO:0065009 with type OBO_REL:is_a
* Changed name of GO:0052054 from "negative regulation by symbiont of host protease activity" to "negative regulation by symbiont of host peptidase activity"
* Added definition dbxref GOC:dph to GO:0052054
* Added definition dbxref GOC:tb to GO:0052054
* Added synonym "negative regulation by symbiont of host protease activity" to GO:0052054
* Added general dbxref GOC:tb to synonym negative regulation by symbiont of host protease activity of GO:0052054
* Added general dbxref GOC:dph to synonym negative regulation by symbiont of host protease activity of GO:0052054
* Changed synonym scope of GO:0052054 from "Related" to "Exact"
* Changed name of GO:0052180 from "negative regulation of protease activity in other organism during symbiotic interaction" to "negative regulation of peptidase activity in other organism during symbiotic interaction"
* Added definition dbxref GOC:dph to GO:0052180
* Added definition dbxref GOC:tb to GO:0052180
* Added synonym "negative regulation of protease activity in other organism during symbiotic interaction" to GO:0052180
* Added general dbxref GOC:tb to synonym negative regulation of protease activity in other organism during symbiotic interaction of GO:0052180
* Added general dbxref GOC:dph to synonym negative regulation of protease activity in other organism during symbiotic interaction of GO:0052180
* Changed synonym scope of GO:0052180 from "Related" to "Exact"
* Copied GO:0052180 to GO:0010466 with type OBO_REL:is_a
* Changed name of GO:0052404 from "negative regulation by host of symbiont protease activity" to "negative regulation by host of symbiont peptidase activity"
* Added definition dbxref GOC:dph to GO:0052404
* Added definition dbxref GOC:tb to GO:0052404
* Added synonym "negative regulation by host of symbiont protease activity" to GO:0052404
* Added general dbxref GOC:tb to synonym negative regulation by host of symbiont protease activity of GO:0052404
* Added general dbxref GOC:dph to synonym negative regulation by host of symbiont protease activity of GO:0052404
* Changed synonym scope of GO:0052404 from "Related" to "Exact"
* Changed definition of GO:0052547 from "Any process that modulates the frequency, rate or extent of peptidase activity, the hydrolysis of peptide linkages within nucleic acids." to "Any process that modulates the frequency, rate or extent of peptidase activity, the hydrolysis of peptide linkages within proteins."