[go-diff] GO update 11/16/2007

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_edit.obo version 5.552 by 5.555

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010467
* Created object of type obo:TERM with id GO:0010468
* Populated new object GO:0010467 (macro)
  * Changed name of GO:0010467 from "<new term>" to "gene expression"
  * Set definition of GO:0010467 to "The process by which a gene's coding sequence is converted into a
mature gene product or products (proteins or RNA). This includes the
production of an RNA transcript as well as any processing to produce a
mature RNA product or an mRNA (for protein-coding genes) and the
translation of that mRNA into protein. Some protein processing events may
be included when they are required to form an active form of a product from
an inactive precursor form."
  * Added definition dbxref GOC:dph to GO:0010467
  * Added definition dbxref GOC:tb to GO:0010467
  * Copied GO:0010467 to GO:0008150 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010467
* Populated new object GO:0010468 (macro)
  * Changed name of GO:0010468 from "<new term>" to "regulation of gene expression"
  * Set definition of GO:0010468 to "Any process that modulates the frequency, rate or extent of gene
expression. Gene expression is the process in which a gene's coding
sequence is converted into a mature gene product or products (proteins or
RNA). This includes the
production of an RNA transcript as well as any processing to produce a
mature RNA product or an mRNA (for protein-coding genes) and the
translation of that mRNA into protein. Some protein processing events may
be included when they are required to form an active form of a product from
an inactive precursor form."
  * Added definition dbxref GOC:dph to GO:0010468
  * Added definition dbxref GOC:tb to GO:0010468
  * Copied GO:0010468 to GO:0010467 with type part_of
  * Copied GO:0010468 to GO:0050789 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010468
* Copied GO:0006350 to GO:0010467 with type part_of
* Copied GO:0006396 to GO:0010467 with type part_of
* Copied GO:0006412 to GO:0010467 with type part_of
* Copied GO:0006417 to GO:0010468 with type OBO_REL:is_a
* Changed name of GO:0007468 from "regulation of rhodopsin gene activity" to "regulation of rhodopsin gene expression"
* Changed definition of GO:0007468 from "Any process that modulates the frequency, rate or extent of rhodopsin gene activity. This includes transcriptional, translational, or posttranslational regulation." to "Any process that modulates the frequency, rate or extent of rhodopsin gene expression. This includes transcriptional, translational, or posttranslational regulation."
* Added definition dbxref GOC:dph to GO:0007468
* Added definition dbxref GOC:tb to GO:0007468
* Added synonym "regulation of rhodopsin gene activity" to GO:0007468
* Added general dbxref GOC:tb to synonym regulation of rhodopsin gene activity of GO:0007468
* Added general dbxref GOC:dph to synonym regulation of rhodopsin gene activity of GO:0007468
* Changed synonym scope of GO:0007468 from "Related" to "Exact"
* Deleted GO:0007468 --OBO_REL:is_a--> GO:0050789
* Copied GO:0007468 to GO:0010468 with type OBO_REL:is_a
* Added definition dbxref CHEBI:44185 to GO:0031427
* Added definition dbxref GOC:response_to_drug to GO:0031427
* Deleted GO:0031427 --OBO_REL:is_a--> GO:0042493
* Copied GO:0031427 to GO:0014070 with type OBO_REL:is_a
* Copied GO:0032922 to GO:0010468 with type OBO_REL:is_a
* Deleted GO:0040029 --OBO_REL:is_a--> GO:0050789
* Copied GO:0040029 to GO:0010468 with type OBO_REL:is_a
* Copied GO:0045449 to GO:0010468 with type OBO_REL:is_a
* Changed name of GO:0045871 from "negative regulation of rhodopsin gene activity" to "negative regulation of rhodopsin gene expression"
* Changed definition of GO:0045871 from "Any process that stops, prevents or reduces the frequency, rate or extent of rhodopsin gene activity." to "Any process that stops, prevents or reduces the frequency, rate or extent of rhodopsin gene expression."
* Added definition dbxref GOC:dph to GO:0045871
* Added definition dbxref GOC:tb to GO:0045871
* Added synonym "negative regulation of rhodopsin gene activity" to GO:0045871
* Added general dbxref GOC:tb to synonym negative regulation of rhodopsin gene activity of GO:0045871
* Added general dbxref GOC:dph to synonym negative regulation of rhodopsin gene activity of GO:0045871
* Changed synonym scope of GO:0045871 from "Related" to "Exact"
* Changed name of GO:0045872 from "positive regulation of rhodopsin gene activity" to "positive regulation of rhodopsin gene expression"
* Changed definition of GO:0045872 from "Any process that activates or increases the frequency, rate or extent of rhodopsin gene activity." to "Any process that activates or increases the frequency, rate or extent of rhodopsin gene expression."
* Added definition dbxref GOC:dph to GO:0045872
* Added definition dbxref GOC:tb to GO:0045872
* Added synonym "positive regulation of rhodopsin gene activity" to GO:0045872
* Added general dbxref GOC:tb to synonym positive regulation of rhodopsin gene activity of GO:0045872
* Added general dbxref GOC:dph to synonym positive regulation of rhodopsin gene activity of GO:0045872
* Changed synonym scope of GO:0045872 from "Related" to "Exact"
* Changed synonym scope of GO:0051091 from "Narrow" to "Exact"
* Copied GO:0051604 to GO:0010467 with type part_of