[go-diff] GO update 11/21/2007

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_edit.obo version 5.559 by 5.560

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0033700
* Created object of type obo:TERM with id GO:0033746
* Created object of type obo:TERM with id GO:0033749
* Populated new object GO:0033700 (macro)
  * Changed name of GO:0033700 from "<new term>" to "phospholipid efflux"
  * Set definition of GO:0033700 to "The directed movement of a phospholipid out of a cell or organelle."
  * Added definition dbxref GOC:mah to GO:0033700
  * Added synonym "phospholipid export" to GO:0033700
  * Changed synonym scope of GO:0033700 from "Related" to "Exact"
  * Copied GO:0033700 to GO:0015914 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033700
* Populated new object GO:0033746 (macro)
  * Changed name of GO:0033746 from "<new term>" to "histone demethylase activity (H3-R2 specific)"
  * Set definition of GO:0033746 to "Catalysis of the removal of a methyl group from arginine at position 2 of the histone H3 protein."
  * Added definition dbxref GOC:mah to GO:0033746
  * Copied GO:0033746 to GO:0032452 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033746
* Populated new object GO:0033749 (macro)
  * Changed name of GO:0033749 from "<new term>" to "histone demethylase activity (H4-R3 specific)"
  * Set definition of GO:0033749 to "Catalysis of the removal of a methyl group from arginine at position 3 of the histone H4 protein."
  * Added definition dbxref GOC:mah to GO:0033749
  * Copied GO:0033749 to GO:0032452 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033749
* Deleted GO:0001985 --OBO_REL:is_a--> GO:0045822
* Deleted definition dbxref ISBN:0721643949 from GO:0003046
* Added definition dbxref Textbook of Medical Physiology (ISBN:0721643949) to GO:0003046
* Deleted definition dbxref ISBN:0721643949 from GO:0003049
* Added definition dbxref Textbook of Medical Physiology (ISBN:0721643949) to GO:0003049
* Deleted definition dbxref ISBN:0721643949 from GO:0003094
* Added definition dbxref Textbook of Medical Physiology (ISBN:0721643949) to GO:0003094
* Deleted general dbxref GOC:hjEC d from synonym histidase activity of GO:0004397
* Deleted general dbxref GOC:hjEC d from synonym histidinase activity of GO:0004397
* Deleted general dbxref GOC:hjEC d from synonym histidine alpha-deaminase activity of GO:0004397
* Added synonym "glycoprotein deglycosylation" to GO:0006517
* Changed synonym scope of GO:0006517 from "Related" to "Exact"
* Copied GO:0006517 to GO:0006464 with type OBO_REL:is_a
* Deleted GO:0010293 --OBO_REL:is_a--> GO:0016623
* Deleted GO:0010301 --OBO_REL:is_a--> GO:0016616
* Deleted GO:0033692 --OBO_REL:is_a--> GO:0016051
* Deleted GO:0033692 --OBO_REL:is_a--> GO:0043284
* Changed definition of GO:0033708 from "Catalysis of the reactions: isocitrate + NAD+ = 2-oxoglutarate + CO2 + NADH.(1R,2S)-1-hydroxybutane-1,2,4-tricarboxylate + NAD+ = 2-oxoadipate + CO2 + NADH + H+." to "Catalysis of the reactions: isocitrate + NAD+ = 2-oxoglutarate + CO2 + NADH and (1R,2S)-1-hydroxybutane-1,2,4-tricarboxylate + NAD+ = 2-oxoadipate + CO2 + NADH + H+."
* Changed definition of GO:0033709 from "Catalysis of the reactions: D-arabinitol + NADP+ = D-xylulose + NADPH + H+.D-arabinitol + NADP+ = D-ribulose + NADPH + H+." to "Catalysis of the reactions: D-arabinitol + NADP+ = D-xylulose + NADPH + H+ and D-arabinitol + NADP+ = D-ribulose + NADPH + H+."
* Deleted GO:0033717 --OBO_REL:is_a--> GO:0016614
* Changed definition of GO:0033747 from "Catalysis of the reactions: Reactive Black 5 + H2O2 = oxidized Reactive Black 5 + 2 H2O.donor + H2O2 = oxidized donor + 2 H2O." to "Catalysis of the reactions: Reactive Black 5 + H2O2 = oxidized Reactive Black 5 + 2 H2O and donor + H2O2 = oxidized donor + 2 H2O."
* Changed definition of GO:0033783 from "Catalysis of the reactions: cholest-5-ene-3beta,25-diol + NADPH + H+ + O2 = cholest-5-ene-3beta,7alpha,25-triol + NADP+ + H2O.cholest-5-ene-3beta,27-diol + NADPH + H+ + O2 = cholest-5-ene-3beta,7alpha,27-triol + NADP+ + H2O." to "Catalysis of the reactions: cholest-5-ene-3beta,25-diol + NADPH + H+ + O2 = cholest-5-ene-3beta,7alpha,25-triol + NADP+ + H2O and cholest-5-ene-3beta,27-diol + NADPH + H+ + O2 = cholest-5-ene-3beta,7alpha,27-triol + NADP+ + H2O."
* Deleted GO:0035176 --OBO_REL:is_a--> GO:0007610
* Deleted GO:0043007 --OBO_REL:is_a--> GO:0051276
* Deleted GO:0043100 --OBO_REL:is_a--> GO:0006206
* Changed synonym scope of GO:0051091 from "Narrow" to "Exact"