[go-diff] GO update 11/22/2007

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_edit.obo version 5.560 by 5.563

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created synonym category Systematic synonym
* Copied GO:0000215 to GO:0016773 with type OBO_REL:is_a
* Added synonym "forked DNA binding" to GO:0000400
* Changed synonym scope of GO:0000400 from "Related" to "Broad"
* Added synonym "forked DNA binding" to GO:0000403
* Changed synonym scope of GO:0000403 from "Related" to "Broad"
* Added synonym "blood vessel formation from pre-existing blood vessels" to GO:0001525
* org.geneontology.oboedit.datamodel.history.ChangeSynCategoryHistoryItem at 1c77dcd
* Changed synonym scope of GO:0001525 from "Related" to "Exact"
* Added synonym "formation of mesodermal clusters" to GO:0001756
* org.geneontology.oboedit.datamodel.history.ChangeSynCategoryHistoryItem at 1424cc
* Changed synonym scope of GO:0001756 from "Related" to "Exact"
* Added synonym "lymph vessel formation" to GO:0001946
* org.geneontology.oboedit.datamodel.history.ChangeSynCategoryHistoryItem at 7bdf95
* Changed synonym scope of GO:0001946 from "Related" to "Exact"
* Changed definition of GO:0003887 from "Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template or primer." to "Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer."
* Added synonym "generation of spermatozoa" to GO:0007283
* org.geneontology.oboedit.datamodel.history.ChangeSynCategoryHistoryItem at e3220a
* Changed synonym scope of GO:0007283 from "Related" to "Exact"
* Added synonym "yolk production" to GO:0007296
* org.geneontology.oboedit.datamodel.history.ChangeSynCategoryHistoryItem at 1cfc20e
* Changed synonym scope of GO:0007296 from "Related" to "Exact"
* Added synonym "neuron long process generation" to GO:0007409
* org.geneontology.oboedit.datamodel.history.ChangeSynCategoryHistoryItem at cd3a94
* Changed synonym scope of GO:0007409 from "Related" to "Exact"
* org.geneontology.oboedit.datamodel.history.ChangeSynCategoryHistoryItem at 1c0ce09
* Added synonym "microspore development" to GO:0009556
* org.geneontology.oboedit.datamodel.history.ChangeSynCategoryHistoryItem at 116b6e6
* Changed synonym scope of GO:0009556 from "Related" to "Exact"
* Added synonym "embryo sac development from the megaspore" to GO:0009561
* org.geneontology.oboedit.datamodel.history.ChangeSynCategoryHistoryItem at 41c5fc
* Changed synonym scope of GO:0009561 from "Related" to "Exact"
* Added synonym "plant development in response to light" to GO:0009640
* org.geneontology.oboedit.datamodel.history.ChangeSynCategoryHistoryItem at 2d29ad
* Changed synonym scope of GO:0009640 from "Related" to "Exact"
* Added synonym "nervous system cell generation" to GO:0022008
* org.geneontology.oboedit.datamodel.history.ChangeSynCategoryHistoryItem at 10b3697
* Changed synonym scope of GO:0022008 from "Related" to "Exact"
* Changed definition of GO:0030965 from "The transfer of electrons from NADH to the quinone pool that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as NADH-quinone oxidoreductase." to "The transfer of electrons from NADH to the quinone pool that occurs during oxidative phosphorylation and results in the generation of a proton gradient, mediated by the enzyme known as NADH-quinone oxidoreductase."
* Added definition dbxref GOC:mah to GO:0030965
* added secondary id GO:0042005 to GO:0040021
* Added synonym "hermaphrodite germ-line sex determination (sensu Nematoda)" to GO:0040021
* Changed synonym scope of GO:0040021 from "Related" to "Exact"
* Changed name of GO:0040022 from "feminization of hermaphroditic germ-line (sensu Nematoda)" to "feminization of hermaphroditic germ-line"
* Changed definition of GO:0040022 from "The determination of female sex and sexual phenotype in the germ-line of the hermaphrodite, as in, but not restricted to, the roundworms (Nematoda, ncbi_taxonomy_id:6231)." to "The determination of female sex and sexual phenotype in the germ-line of the hermaphrodite."
* Added synonym "feminization of hermaphroditic germ-line (sensu Nematoda)" to GO:0040022
* Changed synonym scope of GO:0040022 from "Related" to "Exact"
* Deleted GO:0040022 --OBO_REL:is_a--> GO:0042005
* Copied GO:0040022 to GO:0040021 with type OBO_REL:is_a
* added secondary id GO:0042002 to GO:0042001
* Added synonym "hermaphrodite somatic sex determination (sensu Nematoda)" to GO:0042001
* Changed synonym scope of GO:0042001 from "Related" to "Exact"
* Deleted GO:0042002 --OBO_REL:is_a--> GO:0042001
* Deleted GO:0042003 --OBO_REL:is_a--> GO:0042002
* Deleted GO:0042004 --OBO_REL:is_a--> GO:0042002
* Destroyed object GO:0042002
* Changed name of GO:0042003 from "masculinization of hermaphrodite soma (sensu Nematoda)" to "masculinization of hermaphrodite soma"
* Changed definition of GO:0042003 from "Promotion of male sex and sexual phenotypes in the hermaphroditic nematode soma. As in, but not restricted to, the roundworms (Nematoda, ncbi_taxonomy_id:6231)." to "Promotion of male sex and sexual phenotypes in the hermaphroditic nematode soma."
* Added synonym "masculinization of hermaphrodite soma (sensu Nematoda)" to GO:0042003
* Changed synonym scope of GO:0042003 from "Related" to "Exact"
* Deleted GO:0042003 --OBO_REL:is_a--> GO:0042002
* Copied GO:0042003 to GO:0042001 with type OBO_REL:is_a
* Changed name of GO:0042004 from "feminization of hermaphrodite soma (sensu Nematoda)" to "feminization of hermaphrodite soma"
* Changed definition of GO:0042004 from "Promotion of female sex and sexual phenotypes in the hermaphroditic soma, as in, but not restricted to, the roundworms (Nematoda, ncbi_taxonomy_id:6231)." to "Promotion of female sex and sexual phenotypes in the hermaphroditic soma."
* Added synonym "feminization of hermaphrodite soma (sensu Nematoda)" to GO:0042004
* Changed synonym scope of GO:0042004 from "Related" to "Exact"
* Deleted GO:0042004 --OBO_REL:is_a--> GO:0042002
* Copied GO:0042004 to GO:0042001 with type OBO_REL:is_a
* Deleted GO:0042005 --OBO_REL:is_a--> GO:0040021
* Deleted GO:0040022 --OBO_REL:is_a--> GO:0042005
* Deleted GO:0042006 --OBO_REL:is_a--> GO:0042005
* Destroyed object GO:0042005
* Changed name of GO:0042006 from "masculinization of hermaphroditic germ-line (sensu Nematoda)" to "masculinization of hermaphroditic germ-line"
* Changed definition of GO:0042006 from "The determination of male sex and sexual phenotype in the germ-line of the hermaphrodite, as in, but not restricted to, the roundworms (Nematoda, ncbi_taxonomy_id:6231)." to "The determination of male sex and sexual phenotype in the germ-line of the hermaphrodite."
* Added synonym "masculinization of hermaphroditic germ-line (sensu Nematoda)" to GO:0042006
* Changed synonym scope of GO:0042006 from "Related" to "Exact"
* Deleted GO:0042006 --OBO_REL:is_a--> GO:0042005
* Copied GO:0042006 to GO:0040021 with type OBO_REL:is_a
* Added synonym "glial cell generation" to GO:0042063
* org.geneontology.oboedit.datamodel.history.ChangeSynCategoryHistoryItem at 12d0daf
* Changed synonym scope of GO:0042063 from "Related" to "Exact"
* Added synonym "ovum development" to GO:0048477
* org.geneontology.oboedit.datamodel.history.ChangeSynCategoryHistoryItem at dd6f3a
* Changed synonym scope of GO:0048477 from "Related" to "Exact"
* Added synonym "myofibril production" to GO:0048769
* org.geneontology.oboedit.datamodel.history.ChangeSynCategoryHistoryItem at 1b161e6
* Changed synonym scope of GO:0048769 from "Related" to "Exact"
* Changed synonym scope of GO:0051091 from "Narrow" to "Exact"
* Added synonym "pollen development from the microspore" to GO:0055046
* org.geneontology.oboedit.datamodel.history.ChangeSynCategoryHistoryItem at 925037
* Changed synonym scope of GO:0055046 from "Related" to "Exact"