[go-diff] GO update 11/27/2007

Remote CVS for Gene Ontology gocvs at genome.Stanford.EDU
Tue Nov 27 21:30:43 PST 2007 

OBODIFF of gene_ontology_edit.obo version 5.564 by 5.570

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0033762
* Created object of type obo:TERM with id GO:0034101
* Created object of type obo:TERM with id GO:0034102
* Created object of type obo:TERM with id GO:0034103
* Created object of type obo:TERM with id GO:0034104
* Created object of type obo:TERM with id GO:0034105
* Created object of type obo:TERM with id GO:0034106
* Created object of type obo:TERM with id GO:0034107
* Created object of type obo:TERM with id GO:0034108
* Created object of type obo:TERM with id GO:0034109
* Created object of type obo:TERM with id GO:0034110
* Created object of type obo:TERM with id GO:0034111
* Created object of type obo:TERM with id GO:0034112
* Created object of type obo:TERM with id GO:0034113
* Created object of type obo:TERM with id GO:0034114
* Created object of type obo:TERM with id GO:0034115
* Created object of type obo:TERM with id GO:0034116
* Created object of type obo:TERM with id GO:0034117
* Created object of type obo:TERM with id GO:0034118
* Created object of type obo:TERM with id GO:0034119
* Created object of type obo:TERM with id GO:0034120
* Populated new object GO:0033762 (macro)
  * Changed name of GO:0033762 from "<new term>" to "response to glucagon stimulus"
  * Set definition of GO:0033762 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucagon stimulus."
  * Added definition dbxref GOC:sl to GO:0033762
  * Copied GO:0033762 to GO:0043434 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033762
* Populated new object GO:0034101 (macro)
  * Changed name of GO:0034101 from "<new term>" to "erythrocyte homeostasis"
  * Set definition of GO:0034101 to "The processes of regulating the production and elimination of erythrocytes within an organism."
  * Added definition dbxref GOC:add to GO:0034101
  * Added definition dbxref PMID:10694114 to GO:0034101
  * Added definition dbxref PMID:14754397 to GO:0034101
  * Copied GO:0034101 to GO:0048872 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034101
* Populated new object GO:0034102 (macro)
  * Changed name of GO:0034102 from "<new term>" to "erythrocyte clearance"
  * Added comment "Note that this term is intended for annotation of self-gene products that lead to elimination of erythrocytes without the involvement of a symbiont."
  * Set definition of GO:0034102 to "The selective elimination of erythrocytes from the body by autoregulatory mechanisms."
  * Added definition dbxref GOC:add to GO:0034102
  * Added definition dbxref PMID:12905029 to GO:0034102
  * Added definition dbxref PMID:14754397 to GO:0034102
  * Added synonym "neocytolysis" to GO:0034102
  * Added general dbxref PMID:14754397 to synonym neocytolysis of GO:0034102
  * Changed synonym scope of GO:0034102 from "Related" to "Narrow"
  * Copied GO:0034102 to GO:0048771 with type OBO_REL:is_a
  * Copied GO:0034102 to GO:0034101 with type part_of
  * Assigned namespace "biological_process" to GO:0034102
* Populated new object GO:0034103 (macro)
  * Changed name of GO:0034103 from "<new term>" to "regulation of tissue remodeling"
  * Set definition of GO:0034103 to "Any process that modulates the frequency, rate, or extent of tissue remodeling."
  * Added definition dbxref GOC:add to GO:0034103
  * Copied GO:0034103 to GO:0051239 with type OBO_REL:is_a
  * Copied GO:0034103 to GO:0048771 with type part_of
  * Assigned namespace "biological_process" to GO:0034103
* Populated new object GO:0034104 (macro)
  * Changed name of GO:0034104 from "<new term>" to "negative regulation of tissue remodeling"
  * Set definition of GO:0034104 to "Any process that stops, prevents or reduces the frequency, rate, or extent of tissue remodeling."
  * Added definition dbxref GOC:add to GO:0034104
  * Copied GO:0034104 to GO:0034103 with type OBO_REL:is_a
  * Copied GO:0034104 to GO:0051241 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034104
* Populated new object GO:0034105 (macro)
  * Changed name of GO:0034105 from "<new term>" to "positive regulation of tissue remodeling"
  * Set definition of GO:0034105 to "Any process that activates or increases the frequency, rate, or extent of tissue remodeling."
  * Added definition dbxref GOC:add to GO:0034105
  * Copied GO:0034105 to GO:0051240 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034105
* Populated new object GO:0034106 (macro)
  * Changed name of GO:0034106 from "<new term>" to "regulation of erythrocyte clearance"
  * Set definition of GO:0034106 to "Any process that modulates the frequency, rate, or extent of erythrocyte clearance."
  * Added definition dbxref GOC:add to GO:0034106
  * Added definition dbxref PMID:12905029 to GO:0034106
  * Added definition dbxref PMID:14754397 to GO:0034106
  * Added synonym "regulation of neocytolysis" to GO:0034106
  * Added general dbxref PMID:14754397 to synonym regulation of neocytolysis of GO:0034106
  * Changed synonym scope of GO:0034106 from "Related" to "Narrow"
  * Copied GO:0034106 to GO:0034103 with type OBO_REL:is_a
  * Copied GO:0034106 to GO:0034102 with type part_of
  * Assigned namespace "biological_process" to GO:0034106
* Populated new object GO:0034107 (macro)
  * Changed name of GO:0034107 from "<new term>" to "negative regulation of erythrocyte clearance"
  * Set definition of GO:0034107 to "Any process that stops, prevents or reduces the frequency, rate, or extent of erythrocyte clearance."
  * Added definition dbxref GOC:add to GO:0034107
  * Added definition dbxref PMID:12905029 to GO:0034107
  * Added definition dbxref PMID:14754397 to GO:0034107
  * Added synonym "negative regulation of neocytolysis" to GO:0034107
  * Added general dbxref PMID:14754397 to synonym negative regulation of neocytolysis of GO:0034107
  * Changed synonym scope of GO:0034107 from "Related" to "Narrow"
  * Copied GO:0034107 to GO:0034106 with type OBO_REL:is_a
  * Copied GO:0034107 to GO:0034104 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034107
* Populated new object GO:0034108 (macro)
  * Changed name of GO:0034108 from "<new term>" to "positive regulation of erythrocyte clearance"
  * Set definition of GO:0034108 to "Any process that activates or increases the frequency, rate, or extent of erythrocyte clearance."
  * Added definition dbxref GOC:add to GO:0034108
  * Added definition dbxref PMID:12905029 to GO:0034108
  * Added definition dbxref PMID:14754397 to GO:0034108
  * Added synonym "positive regulation of neocytolysis" to GO:0034108
  * Added general dbxref PMID:14754397 to synonym positive regulation of neocytolysis of GO:0034108
  * Changed synonym scope of GO:0034108 from "Related" to "Narrow"
  * Copied GO:0034108 to GO:0034105 with type OBO_REL:is_a
  * Copied GO:0034108 to GO:0034106 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034108
* Populated new object GO:0034109 (macro)
  * Changed name of GO:0034109 from "<new term>" to "homotypic cell-cell adhesion"
  * Added comment "Note that this term is not synonymous with 'homophilic cell adhesion ; GO:0007156'; the process may occur by homophilic or heterophilic mechanisms."
  * Set definition of GO:0034109 to "The attachment of a cell to a second cell of the identical type via adhesion molecules."
  * Added definition dbxref GOC:add to GO:0034109
  * Copied GO:0034109 to GO:0016337 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034109
* Populated new object GO:0034110 (macro)
  * Changed name of GO:0034110 from "<new term>" to "regulation of homotypic cell-cell adhesion"
  * Set definition of GO:0034110 to "Any process that modulates the frequency, rate, or extent of homotypic cell-cell adhesion."
  * Added definition dbxref GOC:add to GO:0034110
  * Copied GO:0034110 to GO:0022407 with type OBO_REL:is_a
  * Copied GO:0034110 to GO:0034109 with type part_of
  * Assigned namespace "biological_process" to GO:0034110
* Populated new object GO:0034111 (macro)
  * Changed name of GO:0034111 from "<new term>" to "negative regulation of homotypic cell-cell adhesion"
  * Set definition of GO:0034111 to "Any process that stops, prevents or reduces the frequency, rate, or extent of homotypic cell-cell adhesion."
  * Added definition dbxref GOC:add to GO:0034111
  * Copied GO:0034111 to GO:0034110 with type OBO_REL:is_a
  * Copied GO:0034111 to GO:0022408 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034111
* Populated new object GO:0034112 (macro)
  * Changed name of GO:0034112 from "<new term>" to "positive regulation of homotypic cell-cell adhesion"
  * Set definition of GO:0034112 to "Any process that activates or increases the frequency, rate, or extent of homotypic cell-cell adhesion."
  * Added definition dbxref GOC:add to GO:0034112
  * Copied GO:0034112 to GO:0034110 with type OBO_REL:is_a
  * Copied GO:0034112 to GO:0022409 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034112
* Populated new object GO:0034113 (macro)
  * Changed name of GO:0034113 from "<new term>" to "heterotypic cell-cell adhesion"
  * Added comment "Note that this term is not synonymous with 'heterophilic cell adhesion ; GO:0007157'; the process may occur by homophilic or heterophilic mechanisms."
  * Set definition of GO:0034113 to "The attachment of a cell to a cell of a different type via adhesion molecules."
  * Added definition dbxref GOC:add to GO:0034113
  * Copied GO:0034113 to GO:0016337 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034113
* Populated new object GO:0034114 (macro)
  * Changed name of GO:0034114 from "<new term>" to "regulation of heterotypic cell-cell adhesion"
  * Set definition of GO:0034114 to "Any process that modulates the frequency, rate, or extent of heterotypic cell-cell adhesion."
  * Added definition dbxref GOC:add to GO:0034114
  * Copied GO:0034114 to GO:0022407 with type OBO_REL:is_a
  * Copied GO:0034114 to GO:0034113 with type part_of
  * Assigned namespace "biological_process" to GO:0034114
* Populated new object GO:0034115 (macro)
  * Changed name of GO:0034115 from "<new term>" to "negative regulation of heterotypic cell-cell adhesion"
  * Set definition of GO:0034115 to "Any process that stops, prevents or reduces the frequency, rate, or extent of heterotypic cell-cell adhesion."
  * Added definition dbxref GOC:add to GO:0034115
  * Copied GO:0034115 to GO:0034114 with type OBO_REL:is_a
  * Copied GO:0034115 to GO:0022408 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034115
* Populated new object GO:0034116 (macro)
  * Changed name of GO:0034116 from "<new term>" to "positive regulation of heterotypic cell-cell adhesion"
  * Set definition of GO:0034116 to "Any process that activates or increases the frequency, rate, or extent of heterotypic cell-cell adhesion."
  * Added definition dbxref GOC:add to GO:0034116
  * Copied GO:0034116 to GO:0022409 with type OBO_REL:is_a
  * Copied GO:0034116 to GO:0034114 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034116
* Populated new object GO:0034117 (macro)
  * Changed name of GO:0034117 from "<new term>" to "erythrocyte aggregation"
  * Set definition of GO:0034117 to "The adhesion of one erythrocyte to one or more other erythrocytes via adhesion molecules."
  * Added definition dbxref GOC:add to GO:0034117
  * Added definition dbxref PMID:14631543 to GO:0034117
  * Copied GO:0034117 to GO:0034109 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034117
* Populated new object GO:0034118 (macro)
  * Changed name of GO:0034118 from "<new term>" to "regulation of erythrocyte aggregation"
  * Set definition of GO:0034118 to "Any process that modulates the frequency, rate, or extent of erythrocyte aggregation."
  * Added definition dbxref GOC:add to GO:0034118
  * Copied GO:0034118 to GO:0034110 with type OBO_REL:is_a
  * Copied GO:0034118 to GO:0034117 with type part_of
  * Assigned namespace "biological_process" to GO:0034118
* Populated new object GO:0034119 (macro)
  * Changed name of GO:0034119 from "<new term>" to "negative regulation of homotypic cell-cell adhesion"
  * Set definition of GO:0034119 to "Any process that stops, prevents or reduces the frequency, rate, or extent of erythrocyte aggregation."
  * Added definition dbxref GOC:add to GO:0034119
  * Copied GO:0034119 to GO:0034118 with type OBO_REL:is_a
  * Copied GO:0034119 to GO:0034111 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034119
* Populated new object GO:0034120 (macro)
  * Changed name of GO:0034120 from "<new term>" to "positive regulation of erythrocyte aggregation"
  * Set definition of GO:0034120 to "Any process that activates or increases the frequency, rate, or extent of erythrocyte aggregation."
  * Added definition dbxref GOC:add to GO:0034120
  * Copied GO:0034120 to GO:0034112 with type OBO_REL:is_a
  * Copied GO:0034120 to GO:0034118 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034120
* Deleted definition dbxref GOC:response_to_drug from GO:0001975
* Added definition dbxref GOC:ef to GO:0001975
* Changed name of GO:0006363 from "transcription termination from RNA polymerase I promoter" to "termination of RNA polymerase I transcription"
* Changed definition of GO:0006363 from "The process by which transcription by RNA polymerase I is terminated; typically occurs within U-rich regions." to "The process by which the synthesis of an RNA molecule by RNA polymerase I using a DNA template is completed; typically occurs within U-rich regions."
* Added synonym "RNA polymerase I transcription termination" to GO:0006363
* Changed synonym scope of GO:0006363 from "Related" to "Exact"
* Added synonym "transcription termination from RNA polymerase I promoter" to GO:0006363
* Changed synonym scope of GO:0006363 from "Related" to "Exact"
* Changed name of GO:0006369 from "transcription termination from RNA polymerase II promoter" to "termination of RNA polymerase II transcription"
* Changed definition of GO:0006369 from "Any process by which transcription by RNA polymerase II is terminated." to "The process by which the synthesis of an RNA molecule by RNA polymerase II using a DNA template is completed."
* Added synonym "RNA polymerase II transcription termination" to GO:0006369
* Changed synonym scope of GO:0006369 from "Related" to "Exact"
* Added synonym "transcription termination from RNA polymerase II promoter" to GO:0006369
* Changed synonym scope of GO:0006369 from "Related" to "Exact"
* Changed name of GO:0006386 from "transcription termination from RNA polymerase III promoter" to "termination of RNA polymerase III transcription"
* Added synonym "RNA polymerase III transcription termination" to GO:0006386
* Changed synonym scope of GO:0006386 from "Related" to "Exact"
* Added synonym "transcription termination from RNA polymerase III promoter" to GO:0006386
* Changed synonym scope of GO:0006386 from "Related" to "Exact"
* Changed name of GO:0006393 from "RNA transcription termination from mitochondrial promoter" to "termination of mitochondrial transcription"
* Changed definition of GO:0006393 from "The process by which transcription from a mitochondrial promoter is terminated." to "The process by which the synthesis of an RNA molecule using a mitochondrial DNA template is completed."
* Added synonym "mitochondrial transcription termination" to GO:0006393
* Changed synonym scope of GO:0006393 from "Related" to "Exact"
* Added synonym "RNA transcription termination from mitochondrial promoter" to GO:0006393
* Changed synonym scope of GO:0006393 from "Related" to "Exact"
* Deleted definition dbxref GOC:response_to_drug from GO:0014070
* Added definition dbxref GOC:ef to GO:0014070
* Deleted definition dbxref GOC:response_to_drug from GO:0014071
* Added definition dbxref GOC:ef to GO:0014071
* Deleted definition dbxref GOC:response_to_drug from GO:0014072
* Added definition dbxref GOC:ef to GO:0014072
* Deleted definition dbxref GOC:response_to_drug from GO:0014073
* Deleted definition dbxref GOC:response_to_drug from GO:0014074
* Added definition dbxref GOC:ef to GO:0014074
* Deleted definition dbxref GOC:response_to_drug from GO:0014075
* Added definition dbxref GOC:ef to GO:0014075
* Changed name of GO:0014802 from "terminal cisternae" to "terminal cisterna"
* Changed name of GO:0014804 from "terminal cisternae lumen" to "terminal cisterna lumen"
* Changed definition of GO:0014804 from "The region between the inner and outer lipid bilayers of the terminal cisternae envelope. This space is enriched in calsequestrin." to "The region between the inner and outer lipid bilayers of the terminal cisterna envelope. This space is enriched in calsequestrin."
* Copied GO:0030218 to GO:0034101 with type part_of
* Changed name of GO:0030846 from "transcription termination from Pol II promoter, RNA polymerase(A) coupled" to "termination of RNA polymerase II transcription, poly(A)-coupled"
* Changed synonym scope of GO:0030846 from "Exact" to "Related"
* Added synonym "transcription termination from Pol II promoter, RNA polymerase(A) coupled" to GO:0030846
* Changed name of GO:0030847 from "transcription termination from Pol II promoter, RNA polymerase(A)-independent" to "termination of RNA polymerase II transcription, poly(A)-independent"
* Changed synonym scope of GO:0030847 from "Exact" to "Related"
* Added synonym "transcription termination from Pol II promoter, RNA polymerase(A)-independent" to GO:0030847
* Deleted definition dbxref GOC:response_to_drug from GO:0031000
* Added definition dbxref GOC:ef to GO:0031000
* Changed name of GO:0031173 from "otolith mineralization (sensu Tetrapoda)" to "otolith mineralization completed early in development"
* Changed definition of GO:0031173 from "The formation of otoconia by precipitation of specific crystal forms of calcium carbonate around an organic core of extracellular matrix proteins. Otoconia are small (~10 micron) dense extracellular particles present in the otolith end organs of the vertebrate inner ear. As in, but not restricted to, the tetrapods (Tetrapoda, ncbi_taxonomy_id:32523)." to "The formation of otoliths during embryogenesis with completion in early postembryonic development. Formation occurs by precipitation of specific crystal forms of calcium carbonate around an organic core of extracellular matrix proteins. Otoconia (otoliths) are small (~10 micron) dense extracellular particles present in the otolith end organs of the vertebrate inner ear."
* Added synonym "otolith mineralization (sensu Tetrapoda)" to GO:0031173
* Changed name of GO:0031174 from "otolith mineralization (sensu Actinopterygii)" to "lifelong otolith mineralization"
* Changed definition of GO:0031174 from "The formation and growth of otoliths, the large extracellular ear-stones of the fish inner ear, by precipitation of specific crystal forms of calcium carbonate on organic matrices. As in, but not restricted to, the ray-finned fishes (Actinopterygii, ncbi_taxonomy_id:7898)." to "The formation and growth of otoliths throughout the life of the organism. Otoliths are the large extracellular ear-stones of the fish inner ear, produced by precipitation of specific crystal forms of calcium carbonate on organic matrices. The otolith enlarges throughout the life of the fish, as layers of calcium carbonate are added."
* Added synonym "otolith mineralization (sensu Actinopterygii)" to GO:0031174
* Changed synonym scope of GO:0031174 from "Related" to "Exact"
* Deleted definition dbxref GOC:response_to_drug from GO:0031427
* Added definition dbxref GOC:ef to GO:0031427
* Deleted definition dbxref GOC:response_to_drug from GO:0035094
* Added definition dbxref GOC:ef to GO:0035094
* Deleted definition dbxref GOC:response_to_drug from GO:0042220
* Added definition dbxref GOC:ef to GO:0042220
* Deleted definition dbxref GOC:response_to_drug from GO:0043200
* Added definition dbxref GOC:ef to GO:0043200
* Deleted definition dbxref GOC:response_to_drug from GO:0043278
* Added definition dbxref GOC:ef to GO:0043278
* Changed name of GO:0045884 from "regulation of survival gene product activity" to "regulation of survival gene product expression"
* Changed definition of GO:0045884 from "Any process that modulates the frequency, rate or extent of survival gene product activity; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level." to "Any process that modulates the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level."
* Added definition dbxref GOC:dph to GO:0045884
* Added definition dbxref GOC:tb to GO:0045884
* Added synonym "regulation of survival gene product activity" to GO:0045884
* Added general dbxref GOC:tb to synonym regulation of survival gene product activity of GO:0045884
* Added general dbxref GOC:dph to synonym regulation of survival gene product activity of GO:0045884
* Changed synonym scope of GO:0045884 from "Related" to "Exact"
* Copied GO:0045884 to GO:0010468 with type OBO_REL:is_a
* Deleted definition dbxref GOC:response_to_drug from GO:0046677
* Added definition dbxref GOC:ef to GO:0046677
* Deleted definition dbxref GOC:response_to_drug from GO:0046898
* Added definition dbxref GOC:ef to GO:0046898
* Changed synonym scope of GO:0051091 from "Narrow" to "Exact"
* Copied GO:0051726 to GO:0007049 with type part_of

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