[go-diff] GO update 11/28/2007

Wed Nov 28 21:30:43 PST 2007

OBODIFF of gene_ontology_edit.obo version 5.570 by 5.573

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010469
* Created object of type obo:TERM with id GO:0033764
* Created object of type obo:TERM with id GO:0033765
* Created object of type obo:TERM with id GO:0033768
* Created object of type obo:TERM with id GO:0033774
* Populated new object GO:0010469 (macro)
  * Changed name of GO:0010469 from "<new term>" to "regulation of receptor activity"
  * Set definition of GO:0010469 to "Any process that modulates the frequency, rate or extent of receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity."
  * Added definition dbxref GOC:dph to GO:0010469
  * Added definition dbxref GOC:tb to GO:0010469
  * Copied GO:0010469 to GO:0065009 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010469
* Populated new object GO:0033764 (macro)
  * Changed name of GO:0033764 from "<new term>" to "steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"
  * Set definition of GO:0033764 to "Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP, and in which one substrate is a sterol derivative."
  * Added definition dbxref GOC:mah to GO:0033764
  * Added general dbxref EC:1.1.1.- to GO:0033764
  * Added GO:0033764 to category gosubset_prok
  * Copied GO:0033764 to GO:0016229 with type OBO_REL:is_a
  * Copied GO:0033764 to GO:0016616 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033764
* Populated new object GO:0033765 (macro)
  * Changed name of GO:0033765 from "<new term>" to "steroid dehydrogenase activity, acting on the CH-CH group of donors"
  * Set definition of GO:0033765 to "Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor, and in which one substrate is a sterol derivative."
  * Added definition dbxref GOC:mah to GO:0033765
  * Added general dbxref EC:1.1.1.- to GO:0033765
  * Added GO:0033765 to category gosubset_prok
  * Copied GO:0033765 to GO:0016627 with type OBO_REL:is_a
  * Copied GO:0033765 to GO:0016229 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033765
* Populated new object GO:0033768 (macro)
  * Changed name of GO:0033768 from "<new term>" to "SUMO-targeted ubiquitin ligase complex"
  * Set definition of GO:0033768 to "A nuclear ubiquitin ligase complex that specifically targets SUMOylated proteins; the complex is formed of homodimers or heterodimers of RNF4 family ubiquitin ligases and is conserved in eukaryotes."
  * Added definition dbxref GOC:vw to GO:0033768
  * Added definition dbxref PMID:17762864 to GO:0033768
  * Added definition dbxref PMID:17762865 to GO:0033768
  * Copied GO:0033768 to GO:0000152 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033768
* Populated new object GO:0033774 (macro)
  * Changed name of GO:0033774 from "<new term>" to "basal labyrinth"
  * Set definition of GO:0033774 to "A region in the lower half of some cells formed from extensive infoldings of the basal plasma membrane; includes cytoplasm adjacent to the infolded membrane."
  * Added definition dbxref GOC:mah to GO:0033774
  * Added definition dbxref GOC:sart to GO:0033774
  * Added definition dbxref PMID:11640882 to GO:0033774
  * Copied GO:0033774 to GO:0045178 with type part_of
  * Copied GO:0033774 to GO:0044464 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033774
* Changed definition of GO:0000002 from "The maintenance of the structure and integrity of the mitochondrial genome." to "The maintenance of the structure and integrity of the mitochondrial genome; includes replication and segregation of the mitochondrial chromosome."
* Added definition dbxref GOC:vw to GO:0000002
* Deleted GO:0000070 --OBO_REL:is_a--> GO:0022402
* Copied GO:0000819 to GO:0022402 with type OBO_REL:is_a
* Changed definition of GO:0000902 from "Any process that modulates the mass, volume, or shape of a cell." to "Any process that modulates the size or shape of a cell."
* Added definition dbxref GOC:dph to GO:0000902
* Added definition dbxref GOC:tb to GO:0000902
* Changed definition of GO:0002093 from "Any process that alters the mass volume or shape of an auditory receptor cell." to "Any process that alters the size or shape of an auditory receptor cell."
* Added definition dbxref GOC:tb to GO:0002093
* added secondary id GO:0003971 to GO:0003726
* Added synonym "double-stranded RNA specific editase activity" to GO:0003726
* Deleted GO:0003845 --OBO_REL:is_a--> GO:0016229
* Copied GO:0003845 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0003854 --OBO_REL:is_a--> GO:0016229
* Copied GO:0003854 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0003865 --OBO_REL:is_a--> GO:0016627
* Copied GO:0003865 to GO:0033765 with type OBO_REL:is_a
* Deleted GO:0003971 --OBO_REL:is_a--> GO:0003969
* Destroyed object GO:0003971
* Deleted GO:0004303 --OBO_REL:is_a--> GO:0016229
* Copied GO:0004303 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0005049 --OBO_REL:is_a--> GO:0004888
* Copied GO:0005049 to GO:0005515 with type OBO_REL:is_a
* Deleted GO:0006376 --OBO_REL:is_a--> GO:0009987
* Copied GO:0006376 to GO:0022618 with type OBO_REL:is_a
* Changed name of GO:0006884 from "regulation of cell volume" to "cell volume homeostasis"
* Added definition dbxref GOC:dph to GO:0006884
* Added definition dbxref GOC:tb to GO:0006884
* Added synonym "regulation of cell volume" to GO:0006884
* Added general dbxref GOC:tb to synonym regulation of cell volume of GO:0006884
* Added general dbxref GOC:dph to synonym regulation of cell volume of GO:0006884
* Changed synonym scope of GO:0006884 from "Related" to "Exact"
* Added definition dbxref GOC:dph to GO:0006885
* Added definition dbxref GOC:tb to GO:0006885
* Added synonym "hydrogen ion homeostasis" to GO:0006885
* Added general dbxref GOC:tb to synonym hydrogen ion homeostasis of GO:0006885
* Added general dbxref GOC:dph to synonym hydrogen ion homeostasis of GO:0006885
* Changed synonym scope of GO:0006885 from "Related" to "Exact"
* Deleted GO:0006885 --OBO_REL:is_a--> GO:0050801
* Copied GO:0006885 to GO:0055067 with type OBO_REL:is_a
* Copied GO:0007062 to GO:0022402 with type OBO_REL:is_a
* Deleted GO:0007064 --OBO_REL:is_a--> GO:0022402
* Deleted GO:0007176 --OBO_REL:is_a--> GO:0065009
* Copied GO:0007176 to GO:0010469 with type OBO_REL:is_a
* Deleted GO:0008262 --OBO_REL:is_a--> GO:0005515
* Copied GO:0008262 to GO:0005049 with type OBO_REL:is_a
* Copied GO:0008360 to GO:0065008 with type OBO_REL:is_a
* Deleted GO:0008361 --part_of--> GO:0000902
* Copied GO:0008361 to GO:0022604 with type OBO_REL:is_a
* Deleted GO:0008709 --OBO_REL:is_a--> GO:0016229
* Copied GO:0008709 to GO:0033764 with type OBO_REL:is_a
* Set definition of GO:0016229 to "Catalysis of an oxidation-reduction (redox) reaction in which one substrate is a sterol derivative."
* Added definition dbxref GOC:mah to GO:0016229
* Deleted GO:0016229 --OBO_REL:is_a--> GO:0016616
* Copied GO:0016229 to GO:0016491 with type OBO_REL:is_a
* Changed definition of GO:0022604 from "Any process that modulates the frequency, rate or extent of cell morphogenesis." to "Any process that modulates the frequency, rate or extent of cell morphogenesis. Cell morphogenesis is any process that modulates the size or shape of a cell."
* Deleted GO:0030283 --OBO_REL:is_a--> GO:0016229
* Copied GO:0030283 to GO:0033764 with type OBO_REL:is_a
* Changed name of GO:0030641 from "cellular hydrogen ion homeostasis" to "regulation of cellular pH"
* Added definition dbxref GOC:dph to GO:0030641
* Added definition dbxref GOC:tb to GO:0030641
* Added synonym "cellular hydrogen ion homeostasis" to GO:0030641
* Added general dbxref GOC:tb to synonym cellular hydrogen ion homeostasis of GO:0030641
* Added general dbxref GOC:dph to synonym cellular hydrogen ion homeostasis of GO:0030641
* Changed synonym scope of GO:0030641 from "Related" to "Exact"
* Copied GO:0030641 to GO:0006885 with type OBO_REL:is_a
* Deleted GO:0031551 --OBO_REL:is_a--> GO:0065009
* Copied GO:0031551 to GO:0010469 with type OBO_REL:is_a
* Deleted GO:0033236 --OBO_REL:is_a--> GO:0003845
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at d7521f
* Deleted GO:0033237 --OBO_REL:is_a--> GO:0003845
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 508317
* Copied GO:0034105 to GO:0034103 with type OBO_REL:is_a
* Changed name of GO:0034119 from "negative regulation of homotypic cell-cell adhesion" to "negative regulation of erythrocyte aggregation"
* Changed definition of GO:0043109 from "Any process that modulates the activity of the transmembrane protein Smoothened." to "Any process that modulates the activity of the transmembrane protein Smoothened. Smoothened activity is when a Smoothened molecule combines with an activated molecule of Patched to initiate a change in cell activity."
* Added definition dbxref GOC:dph to GO:0043109
* Added definition dbxref GOC:tb to GO:0043109
* Added definition dbxref PMID:17419683 to GO:0043109
* Copied GO:0043109 to GO:0010469 with type OBO_REL:is_a
* Deleted GO:0045144 --OBO_REL:is_a--> GO:0022402
* Deleted synonym "down regulation of cell volume" from GO:0045794
* Deleted synonym "down-regulation of cell volume" from GO:0045794
* Deleted synonym "downregulation of cell volume" from GO:0045794
* Deleted synonym "inhibition of cell volume" from GO:0045794
* Deleted synonym "activation of cell volume" from GO:0045795
* Deleted synonym "stimulation of cell volume" from GO:0045795
* Deleted synonym "up regulation of cell volume" from GO:0045795
* Deleted synonym "up-regulation of cell volume" from GO:0045795
* Deleted synonym "upregulation of cell volume" from GO:0045795
* Deleted GO:0046719 --OBO_REL:is_a--> GO:0050789
* Copied GO:0046719 to GO:0048878 with type OBO_REL:is_a
* Deleted GO:0047005 --OBO_REL:is_a--> GO:0016229
* Copied GO:0047005 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0047006 --OBO_REL:is_a--> GO:0016229
* Copied GO:0047006 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0047007 --OBO_REL:is_a--> GO:0016229
* Copied GO:0047007 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0047008 --OBO_REL:is_a--> GO:0016229
* Copied GO:0047008 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0047013 --OBO_REL:is_a--> GO:0016229
* Copied GO:0047013 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0047022 --OBO_REL:is_a--> GO:0016229
* Copied GO:0047022 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0047023 --OBO_REL:is_a--> GO:0016229
* Copied GO:0047023 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0047024 --OBO_REL:is_a--> GO:0016229
* Copied GO:0047024 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0047026 --OBO_REL:is_a--> GO:0016229
* Copied GO:0047026 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0047035 --OBO_REL:is_a--> GO:0016229
* Copied GO:0047035 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0047042 --OBO_REL:is_a--> GO:0016229
* Copied GO:0047042 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0047044 --OBO_REL:is_a--> GO:0016229
* Copied GO:0047044 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0047045 --OBO_REL:is_a--> GO:0016229
* Copied GO:0047045 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0047521 --OBO_REL:is_a--> GO:0016229
* Copied GO:0047521 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0047568 --OBO_REL:is_a--> GO:0016627
* Copied GO:0047568 to GO:0033765 with type OBO_REL:is_a
* Deleted GO:0047571 --OBO_REL:is_a--> GO:0016627
* Copied GO:0047571 to GO:0033765 with type OBO_REL:is_a
* Deleted GO:0047881 --OBO_REL:is_a--> GO:0016229
* Copied GO:0047881 to GO:0033764 with type OBO_REL:is_a
* Deleted GO:0050327 --OBO_REL:is_a--> GO:0016229
* Copied GO:0050327 to GO:0033764 with type OBO_REL:is_a
* Changed synonym scope of GO:0051091 from "Narrow" to "Exact"
* Deleted GO:0051177 --OBO_REL:is_a--> GO:0022402
* Deleted GO:0051394 --OBO_REL:is_a--> GO:0065009
* Copied GO:0051394 to GO:0010469 with type OBO_REL:is_a
* Changed name of GO:0051452 from "cellular pH reduction" to "intracellular pH reduction"
* Deleted synonym "intracellular pH reduction" from GO:0051452
* Changed name of GO:0051453 from "regulation of cellular pH" to "regulation of intracellular pH"
* Added definition dbxref GOC:dph to GO:0051453
* Added definition dbxref GOC:tb to GO:0051453
* Deleted synonym "regulation of intracellular pH" from GO:0051453
* Deleted GO:0051453 --OBO_REL:is_a--> GO:0006885
* Changed name of GO:0051454 from "cellular pH elevation" to "intracellular pH elevation"
* Deleted synonym "intracellular pH elevation" from GO:0051454
* Changed definition of GO:0060116 from "Any process that alters the mass volume or shape of a vestibular receptor cell." to "Any process that alters the size or shape of a vestibular receptor cell."
* Added definition dbxref GOC:tb to GO:0060116