From gocvs at genome.Stanford.EDU  Mon Oct  1 21:30:40 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Mon, 1 Oct 2007 21:30:40 -0700 (PDT)
Subject: [go-diff] GO update 10/01/2007
Message-ID: <200710020430.VAA00879@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.487 by 5.489

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0032593
* Populated new object GO:0032593 (macro)
  * Changed name of GO:0032593 from "<new term>" to "insulin-responsive compartment"
  * Set definition of GO:0032593 to "A small membrane-bounded vesicle that releases its contents by exocytosis in response to insulin stimulation; the contents are enriched in GLUT4, IRAP and VAMP2."
  * Added definition dbxref PMID:17644329 to GO:0032593
  * Added synonym "GLUT4 storage compartment" to GO:0032593
  * Changed synonym scope of GO:0032593 from "Related" to "Exact"
  * Added synonym "GSC" to GO:0032593
  * Added synonym "IRC" to GO:0032593
  * Copied GO:0032593 to GO:0030141 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0032593
* Deleted synonym "kinetochore motor activity" from GO:0000776
* Deleted synonym "chromatid" from GO:0000793
* Deleted synonym "chromatid" from GO:0000794
* Deleted synonym "adenylylsulfate kinase activity" from GO:0004020
* Deleted synonym "proteasome endopeptidase core" from GO:0004175
* Deleted synonym "heterotrimeric G-protein" from GO:0005834
* Deleted synonym "plasma membrane cation-transporting ATPase" from GO:0005886
* Deleted synonym "histone-specific chaperone activity" from GO:0006333
* Deleted synonym "nucleoplasmin ATPase activity" from GO:0006333
* Deleted synonym "histone-specific chaperone activity" from GO:0006334
* Deleted synonym "positive regulation of apoptosis" from GO:0006917
* Changed definition of GO:0016009 from "The smaller of the two mitochodrial derivatives that arise by the unfolding of the Nebenkern during flagellum elongation." to "The smaller of the two mitochondrial derivatives that arise by the unfolding of the Nebenkern during flagellum elongation."
* Deleted synonym "monoterpene catabolic process" from GO:0016100
* Deleted synonym "monoterpene catabolism" from GO:0016100
* Deleted GO:0018869 --OBO_REL:is_a--> GO:0009308
* Deleted GO:0018869 --OBO_REL:is_a--> GO:0018874
* Deleted GO:0019259 --OBO_REL:is_a--> GO:0018869
* Deleted GO:0018870 --OBO_REL:is_a--> GO:0018869
* Destroyed object GO:0018869
* Deleted GO:0018870 --OBO_REL:is_a--> GO:0018869
* Copied GO:0018870 to GO:0043420 with type OBO_REL:is_a
* Deleted synonym "protein-disulfide reduction" from GO:0019153
* Deleted GO:0019259 --OBO_REL:is_a--> GO:0018869
* Deleted GO:0019259 --OBO_REL:is_a--> GO:0042178
* Destroyed object GO:0019259
* Changed definition of GO:0019836 from "The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in the host organism by a symbiont. The host is defined as the larger of the organisms involved in a symbiotic
interaction." to "The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in the host organism by a symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction."
* Changed definition of GO:0031580 from "The processes that establish the spatial arrangement of lipid rafts within the plasma membrane." to "The process that establishes the spatial arrangement of lipid rafts within the plasma membrane."
* Deleted synonym "adrenocorticotropin" from GO:0032353
* Changed name of GO:0032592 from "integral to mitochodrial membrane" to "integral to mitochondrial membrane"
* Deleted synonym "T cell proliferation" from GO:0042098
* Added synonym "T-cell proliferation" to GO:0042098
* Changed synonym scope of GO:0042098 from "Related" to "Exact"
* Deleted synonym "regeneration" from GO:0042246
* added secondary id GO:0018869 to GO:0043420
* Added definition dbxref ChEBI:16567 to GO:0043420
* Added general dbxref UM-BBD_pathwayID:abz2 to GO:0043420
* Added synonym "2-aminobenzoate metabolic process" to GO:0043420
* Changed synonym scope of GO:0043420 from "Related" to "Exact"
* Added synonym "2-aminobenzoate metabolism" to GO:0043420
* Changed synonym scope of GO:0043420 from "Related" to "Exact"
* Copied GO:0043420 to GO:0009308 with type OBO_REL:is_a
* added secondary id GO:0019259 to GO:0043421
* Added definition dbxref ChEBI:16567 to GO:0043421
* Added general dbxref MetaCyc:2AMINOBENZDEG-PWY to GO:0043421
* Added synonym "2-aminobenzoate breakdown" to GO:0043421
* Changed synonym scope of GO:0043421 from "Related" to "Exact"
* Added synonym "2-aminobenzoate degradation" to GO:0043421
* Changed synonym scope of GO:0043421 from "Related" to "Exact"
* Copied GO:0043421 to GO:0042178 with type OBO_REL:is_a
* Added synonym "GEM domain" to GO:0045121
* Added synonym "glycolipid-enriched membrane domain" to GO:0045121
* Deleted synonym "insulin" from GO:0045722
* Deleted synonym "insulin" from GO:0045727
* Deleted synonym "insulin" from GO:0046326
* Deleted synonym "inhibin" from GO:0046882
* Deleted synonym "adrenocorticotropin" from GO:0046886
* Deleted synonym "adrenocorticotropin" from GO:0046887
* Deleted synonym "insulin" from GO:0046889
* Deleted synonym "17-O-deacetylvindoline O-acetyltransferase activity" from GO:0047162
* Deleted synonym "D-alanine transaminase activity" from GO:0047810
* Deleted synonym "isopropanol dehydrogenase (NADP+) activity" from GO:0050009
* Deleted synonym "protein tetramerization activity" from GO:0051262
* Deleted synonym "GTP-dependent polynucleotide kinase activity" from GO:0051730
* Deleted synonym "GTP-dependent polynucleotide kinase activity" from GO:0051737
* Deleted synonym "formaldehyde dehydrogenase activity" from GO:0051903


From gocvs at genome.Stanford.EDU  Tue Oct  2 21:30:40 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Tue, 2 Oct 2007 21:30:40 -0700 (PDT)
Subject: [go-diff] GO update 10/02/2007
Message-ID: <200710030430.VAA19179@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.489 by 5.490

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0032594
* Created object of type obo:TERM with id GO:0032595
* Created object of type obo:TERM with id GO:0032596
* Created object of type obo:TERM with id GO:0032597
* Created object of type obo:TERM with id GO:0032598
* Created object of type obo:TERM with id GO:0032599
* Created object of type obo:TERM with id GO:0032600
* Created object of type obo:TERM with id GO:0033606
* Created object of type obo:TERM with id GO:0033608
* Created object of type obo:TERM with id GO:0033609
* Created object of type obo:TERM with id GO:0033610
* Created object of type obo:TERM with id GO:0033611
* Populated new object GO:0032594 (macro)
  * Changed name of GO:0032594 from "<new term>" to "protein transport within lipid bilayer"
  * Set definition of GO:0032594 to "The directed movement of a protein within a lipid bilayer."
  * Added definition dbxref GOC:mah to GO:0032594
  * Added synonym "protein translocation within membrane" to GO:0032594
  * Changed synonym scope of GO:0032594 from "Related" to "Exact"
  * Added synonym "receptor translocation within membrane" to GO:0032594
  * Changed synonym scope of GO:0032594 from "Related" to "Narrow"
  * Added synonym "receptor transport within lipid bilayer" to GO:0032594
  * Changed synonym scope of GO:0032594 from "Related" to "Narrow"
  * Copied GO:0032594 to GO:0015031 with type OBO_REL:is_a
  * Copied GO:0032594 to GO:0016044 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032594
* Populated new object GO:0032595 (macro)
  * Changed name of GO:0032595 from "<new term>" to "B cell receptor transport within lipid bilayer"
  * Set definition of GO:0032595 to "The directed movement of a B cell receptor within a lipid bilayer."
  * Added definition dbxref GOC:mah to GO:0032595
  * Added synonym "B cell receptor translocation within membrane" to GO:0032595
  * Changed synonym scope of GO:0032595 from "Related" to "Exact"
  * Added synonym "BCR translocation within membrane" to GO:0032595
  * Changed synonym scope of GO:0032595 from "Related" to "Exact"
  * Added synonym "BCR transport within lipid bilayer" to GO:0032595
  * Changed synonym scope of GO:0032595 from "Related" to "Exact"
  * Copied GO:0032595 to GO:0032594 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032595
* Populated new object GO:0032596 (macro)
  * Changed name of GO:0032596 from "<new term>" to "protein transport into lipid raft"
  * Set definition of GO:0032596 to "The directed movement of a protein into a lipid raft."
  * Added definition dbxref GOC:mah to GO:0032596
  * Added synonym "protein translocation into lipid raft" to GO:0032596
  * Changed synonym scope of GO:0032596 from "Related" to "Exact"
  * Added synonym "receptor translocation into lipid raft" to GO:0032596
  * Changed synonym scope of GO:0032596 from "Related" to "Narrow"
  * Added synonym "receptor transport into lipid raft" to GO:0032596
  * Changed synonym scope of GO:0032596 from "Related" to "Narrow"
  * Copied GO:0032596 to GO:0032594 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032596
* Populated new object GO:0032597 (macro)
  * Changed name of GO:0032597 from "<new term>" to "B cell receptor transport into lipid raft"
  * Set definition of GO:0032597 to "The directed movement of a B cell receptor into a lipid raft."
  * Added definition dbxref GOC:mah to GO:0032597
  * Added synonym "B cell receptor translocation into lipid raft" to GO:0032597
  * Changed synonym scope of GO:0032597 from "Related" to "Exact"
  * Added synonym "BCR translocation into lipid raft" to GO:0032597
  * Changed synonym scope of GO:0032597 from "Related" to "Exact"
  * Added synonym "BCR transport into lipid raft" to GO:0032597
  * Changed synonym scope of GO:0032597 from "Related" to "Exact"
  * Copied GO:0032597 to GO:0032596 with type OBO_REL:is_a
  * Copied GO:0032597 to GO:0032595 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032597
* Populated new object GO:0032598 (macro)
  * Changed name of GO:0032598 from "<new term>" to "B cell receptor transport into immunological synapse"
  * Set definition of GO:0032598 to "The directed movement of a B cell receptor into an immunological synapse."
  * Added definition dbxref GOC:mah to GO:0032598
  * Added synonym "B cell receptor translocation into immunological synapse" to GO:0032598
  * Changed synonym scope of GO:0032598 from "Related" to "Exact"
  * Added synonym "BCR translocation into immunological synapse" to GO:0032598
  * Changed synonym scope of GO:0032598 from "Related" to "Exact"
  * Added synonym "BCR transport into immunological synapse" to GO:0032598
  * Changed synonym scope of GO:0032598 from "Related" to "Exact"
  * Copied GO:0032598 to GO:0032597 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032598
* Populated new object GO:0032599 (macro)
  * Changed name of GO:0032599 from "<new term>" to "protein transport out of lipid raft"
  * Set definition of GO:0032599 to "The directed movement of a protein out of a lipid raft."
  * Added definition dbxref GOC:mah to GO:0032599
  * Added synonym "protein translocation out of lipid raft" to GO:0032599
  * Changed synonym scope of GO:0032599 from "Related" to "Exact"
  * Added synonym "receptor translocation out of lipid raft" to GO:0032599
  * Changed synonym scope of GO:0032599 from "Related" to "Narrow"
  * Added synonym "receptor transport out of lipid raft" to GO:0032599
  * Changed synonym scope of GO:0032599 from "Related" to "Narrow"
  * Copied GO:0032599 to GO:0032594 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032599
* Populated new object GO:0032600 (macro)
  * Changed name of GO:0032600 from "<new term>" to "chemokine receptor transport out of lipid raft"
  * Set definition of GO:0032600 to "The directed movement of a chemokine receptor out of a lipid raft."
  * Added definition dbxref GOC:mah to GO:0032600
  * Added synonym "chemokine receptor translocation out of lipid raft" to GO:0032600
  * Changed synonym scope of GO:0032600 from "Related" to "Exact"
  * Copied GO:0032600 to GO:0033606 with type OBO_REL:is_a
  * Copied GO:0032600 to GO:0032599 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032600
* Populated new object GO:0033606 (macro)
  * Changed name of GO:0033606 from "<new term>" to "chemokine receptor transport within lipid bilayer"
  * Set definition of GO:0033606 to "The directed movement of a chemokine receptor within a lipid bilayer."
  * Added definition dbxref GOC:mah to GO:0033606
  * Added synonym "chemokine receptor translocation within membrane" to GO:0033606
  * Changed synonym scope of GO:0033606 from "Related" to "Exact"
  * Copied GO:0033606 to GO:0032594 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033606
* Populated new object GO:0033608 (macro)
  * Changed name of GO:0033608 from "<new term>" to "formyl-CoA transferase activity"
  * Set definition of GO:0033608 to "Catalysis of the reaction formyl-CoA + oxalate = formate + oxalyl-CoA."
  * Added definition dbxref EC:2.8.3.16 to GO:0033608
  * Added definition dbxref GOC:mlg to GO:0033608
  * Added general dbxref EC:2.8.3.16 to GO:0033608
  * Added synonym "formyl-CoA oxalate CoA-transferase activity" to GO:0033608
  * Added general dbxref EC:2.8.3.16 to synonym formyl-CoA oxalate CoA-transferase activity of GO:0033608
  * Changed synonym scope of GO:0033608 from "Related" to "Exact"
  * Added synonym "formyl-CoA transferase activity" to GO:0033608
  * Added general dbxref EC:2.8.3.16 to synonym formyl-CoA transferase activity of GO:0033608
  * Changed synonym scope of GO:0033608 from "Related" to "Exact"
  * Added synonym "formyl-CoA:oxalate CoA-transferase activity" to GO:0033608
  * Added general dbxref EC:2.8.3.16 to synonym formyl-CoA:oxalate CoA-transferase activity of GO:0033608
  * Changed synonym scope of GO:0033608 from "Related" to "Exact"
  * Added synonym "formyl-coenzyme A transferase activity" to GO:0033608
  * Added general dbxref EC:2.8.3.16 to synonym formyl-coenzyme A transferase activity of GO:0033608
  * Changed synonym scope of GO:0033608 from "Related" to "Exact"
  * Copied GO:0033608 to GO:0008410 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033608
* Populated new object GO:0033609 (macro)
  * Changed name of GO:0033609 from "<new term>" to "oxalate metabolic process"
  * Set definition of GO:0033609 to "The chemical reactions and pathways involving oxalate, the organic acid ethanedioate."
  * Added definition dbxref ChEBI:30623 to GO:0033609
  * Added definition dbxref GOC:mlg to GO:0033609
  * Added synonym "ethanedioate metabolic process" to GO:0033609
  * Changed synonym scope of GO:0033609 from "Related" to "Exact"
  * Added synonym "ethanedioic acid metabolic process" to GO:0033609
  * Changed synonym scope of GO:0033609 from "Related" to "Exact"
  * Added synonym "oxalate metabolism" to GO:0033609
  * Changed synonym scope of GO:0033609 from "Related" to "Exact"
  * Added synonym "oxalic acid metabolic process" to GO:0033609
  * Changed synonym scope of GO:0033609 from "Related" to "Exact"
  * Copied GO:0033609 to GO:0043648 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033609
* Populated new object GO:0033610 (macro)
  * Changed name of GO:0033610 from "<new term>" to "oxalate biosynthetic process"
  * Set definition of GO:0033610 to "The chemical reactions and pathways resulting in the formation of oxalate, the organic acid ethanedioate."
  * Added definition dbxref ChEBI:30623 to GO:0033610
  * Added definition dbxref GOC:mlg to GO:0033610
  * Added synonym "ethanedioate biosynthetic process" to GO:0033610
  * Changed synonym scope of GO:0033610 from "Related" to "Exact"
  * Added synonym "ethanedioic acid biosynthetic process" to GO:0033610
  * Changed synonym scope of GO:0033610 from "Related" to "Exact"
  * Added synonym "oxalate anabolism" to GO:0033610
  * Changed synonym scope of GO:0033610 from "Related" to "Exact"
  * Added synonym "oxalate biosynthesis" to GO:0033610
  * Changed synonym scope of GO:0033610 from "Related" to "Exact"
  * Added synonym "oxalate formation" to GO:0033610
  * Changed synonym scope of GO:0033610 from "Related" to "Exact"
  * Added synonym "oxalate synthesis" to GO:0033610
  * Changed synonym scope of GO:0033610 from "Related" to "Exact"
  * Added synonym "oxalic acid biosynthetic process" to GO:0033610
  * Changed synonym scope of GO:0033610 from "Related" to "Exact"
  * Copied GO:0033610 to GO:0033609 with type OBO_REL:is_a
  * Copied GO:0033610 to GO:0043650 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033610
* Populated new object GO:0033611 (macro)
  * Changed name of GO:0033611 from "<new term>" to "oxalate catabolic process"
  * Set definition of GO:0033611 to "The chemical reactions and pathways resulting in the breakdown of oxalate, the organic acid ethanedioate."
  * Added definition dbxref ChEBI:30623 to GO:0033611
  * Added definition dbxref GOC:mlg to GO:0033611
  * Added synonym "ethanedioate catabolic process" to GO:0033611
  * Changed synonym scope of GO:0033611 from "Related" to "Exact"
  * Added synonym "ethanedioic acid catabolic process" to GO:0033611
  * Changed synonym scope of GO:0033611 from "Related" to "Exact"
  * Added synonym "oxalate breakdown" to GO:0033611
  * Changed synonym scope of GO:0033611 from "Related" to "Exact"
  * Added synonym "oxalate catabolism" to GO:0033611
  * Changed synonym scope of GO:0033611 from "Related" to "Exact"
  * Added synonym "oxalate degradation" to GO:0033611
  * Changed synonym scope of GO:0033611 from "Related" to "Exact"
  * Added synonym "oxalic acid catabolic process" to GO:0033611
  * Changed synonym scope of GO:0033611 from "Related" to "Exact"
  * Copied GO:0033611 to GO:0043649 with type OBO_REL:is_a
  * Copied GO:0033611 to GO:0033609 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033611
* Deleted synonym "metaphase chromosome" from GO:0000794
* Deleted synonym "ADP-ribosylarginine hydrolase activity" from GO:0003875
* Deleted synonym "transmembrane ephrin" from GO:0005887
* Deleted synonym "DNA replication accessory factor" from GO:0006260
* Deleted synonym "DNA replication factor" from GO:0006260
* Deleted synonym "protein-pyrroloquinoline-quinone linkage" from GO:0006464
* Deleted synonym "proteoglycan sulfate transfer" from GO:0006790
* Deleted synonym "dynein ATPase activity" from GO:0007018
* Deleted synonym "SAP kinase 3 activity" from GO:0007254
* Deleted synonym "SAP kinase 4 activity" from GO:0007254
* Deleted synonym "SAP kinase 5 activity" from GO:0007254
* Deleted synonym "blood coagulation factor activity" from GO:0007596
* Deleted synonym "L-ribulose-phosphate 4-epimerase activity" from GO:0008742
* Deleted general dbxref :EC e from synonym NADH-nitrate reductase activity of GO:0009703
* Added general dbxref EC:1.7.1.1 to synonym NADH-nitrate reductase activity of GO:0009703
* Added synonym "ethanedioate transport" to GO:0019532
* Changed synonym scope of GO:0019532 from "Related" to "Exact"
* Added synonym "ethanedioic acid transport" to GO:0019532
* Changed synonym scope of GO:0019532 from "Related" to "Exact"
* Deleted synonym "actin cytoskeleton reorganization" from GO:0030036
* Deleted synonym "myosin ATPase activity" from GO:0030048
* Deleted synonym "3,7-dimethylquercitin 4'-O-methyltransferase activity" from GO:0030758
* Deleted synonym "regulation of actin thin filament length activity" from GO:0030832
* Deleted synonym "mRNA catabolic process, deadenylation-independent decay" from GO:0031086
* Deleted synonym "beta-glucosidase activity" from GO:0031217
* Deleted synonym "eukaryotic 80S initiation complex" from GO:0033291
* Deleted synonym "activation of innate immune response" from GO:0045089
* Deleted synonym "aryl-alcohol dehydrogenase (NADP+) activity" from GO:0047681
* Deleted synonym "carboxycyclohexadienyl dehydratase activity" from GO:0047769
* Deleted synonym "cis-2-enoyl-CoA reductase (NADPH) activity" from GO:0047774
* Deleted synonym "formate dehydrogenase (NADP+) activity" from GO:0047899
* Deleted synonym "lymph gland development" from GO:0048542
* Deleted synonym "elevation of smooth endoplasmic reticulum calcium ion concentration" from GO:0051564
* Added synonym "elevation of smooth ER calcium ion concentration" to GO:0051564
* Changed synonym scope of GO:0051564 from "Related" to "Exact"
* Deleted synonym "regulation of cardiac muscle growth" from GO:0055021


From gocvs at genome.Stanford.EDU  Wed Oct  3 21:30:40 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Wed, 3 Oct 2007 21:30:40 -0700 (PDT)
Subject: [go-diff] GO update 10/03/2007
Message-ID: <200710040430.VAA00103@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.490 by 5.491

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Deleted synonym "mitotic chromosome" from GO:0000794
* Deleted synonym "ameboidal cell migration" from GO:0001667
* Added synonym "ameboid cell migration" to GO:0001667
* Changed synonym scope of GO:0001667 from "Related" to "Exact"
* Deleted synonym "T-helper 2 cell lineage commitment" from GO:0002297
* Deleted synonym "alpha-2 macroglobulin receptor-associated protein activity" from GO:0005102
* Deleted synonym "membrane-associated guanylate kinase" from GO:0005102
* Deleted synonym "N-methyl-D-aspartate receptor-associated protein activity" from GO:0005102
* Deleted synonym "nicotinic acetylcholine receptor-associated protein activity" from GO:0005102
* Deleted synonym "inward rectifier channel" from GO:0005242
* Deleted synonym "inorganic phosphate transmembrane transporter activity" from GO:0005315
* Deleted synonym "fibrillin" from GO:0005509
* Deleted synonym "detection of calcium ion" from GO:0005513
* Added synonym "calcium ion detection" to GO:0005513
* Changed synonym scope of GO:0005513 from "Related" to "Exact"
* Deleted synonym "death receptor adaptor protein activity" from GO:0005515
* Deleted synonym "death receptor interacting protein activity" from GO:0005515
* Deleted synonym "death receptor-associated factor activity" from GO:0005515
* Deleted synonym "N-methyl-D-aspartate receptor-associated protein activity" from GO:0005515
* Deleted synonym "free L-amino acid racemization" from GO:0006520
* Deleted synonym "acute-phase response protein activity" from GO:0006953
* Deleted synonym "vesicle fusion" from GO:0007086
* Deleted synonym "membrane-associated guanylate kinase" from GO:0007155
* Deleted synonym "ecdysone receptor holocomplex" from GO:0008230
* Deleted synonym "4-hydroxybenzoate octaprenyltransferase activity" from GO:0008412
* Deleted synonym "UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity" from GO:0008765
* Deleted synonym "chloroplast thylakoid" from GO:0009534
* Deleted synonym "antiviral response protein activity" from GO:0009615
* Changed name of GO:0015204 from "urea transporter activity" to "urea transmembrane transporter activity"
* Changed definition of GO:0015204 from "Enables the directed movement of urea into, out of, within or between cells. Urea is the water soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle. It is the main nitrogen-containing (urinary) excretion product in ureotelic animals." to "Enables the directed movement of urea cross a membrane into, out of, within or between cells. Urea is the water soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle. It is the main nitrogen-containing (urinary) excretion product in ureotelic animals."
* Added synonym "urea transporter activity" to GO:0015204
* Changed synonym scope of GO:0015204 from "Related" to "Broad"
* Copied GO:0015204 to GO:0022891 with type OBO_REL:is_a
* Changed name of GO:0015228 from "coenzyme A transporter activity" to "coenzyme A transmembrane transporter activity"
* Changed definition of GO:0015228 from "Enables the directed movement of coenzyme A into, out of, within or between cells. Coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, is an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester." to "Enables the directed movement of coenzyme A across a membrane into, out of, within or between cells. Coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, is an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester."
* Added synonym "coenzyme A transporter activity" to GO:0015228
* Changed synonym scope of GO:0015228 from "Related" to "Broad"
* Copied GO:0015228 to GO:0022891 with type OBO_REL:is_a
* Changed name of GO:0015230 from "FAD transporter activity" to "FAD transmembrane transporter activity"
* Changed definition of GO:0015230 from "Enables the directed movement of flavin-adenine dinucleotide (FAD) into, out of, within or between cells. FAD forms the coenzyme of the prosthetic group of various flavoprotein oxidoreductase enzymes, in which it functions as an electron acceptor by being reversibly converted to its reduced form." to "Enables the directed movement of flavin-adenine dinucleotide (FAD) across a membrane into, out of, within or between cells. FAD forms the coenzyme of the prosthetic group of various flavoprotein oxidoreductase enzymes, in which it functions as an electron acceptor by being reversibly converted to its reduced form."
* Added synonym "FAD transporter activity" to GO:0015230
* Changed synonym scope of GO:0015230 from "Related" to "Broad"
* Copied GO:0015230 to GO:0022891 with type OBO_REL:is_a
* Deleted synonym "siderophore transporter activity" from GO:0015343
* Deleted synonym "ATPase activity, coupled to transmembrane movement of substances" from GO:0015405
* Deleted synonym "monoterpene metabolic process" from GO:0016098
* Deleted synonym "monoterpene metabolism" from GO:0016098
* Deleted synonym "terpene biosynthesis" from GO:0016114
* Deleted synonym "terpene biosynthetic process" from GO:0016114
* Deleted synonym "vesicle fusion" from GO:0016189
* Deleted synonym "vesicle fusion" from GO:0016192
* Deleted synonym "ubiquitin" from GO:0016567
* Deleted synonym "dioxygenase activity" from GO:0016702
* Deleted synonym "vesicle fusion" from GO:0019817
* Deleted synonym "periplasmic space" from GO:0030287
* Deleted synonym "periplasm" from GO:0030288
* Deleted synonym "periplasmic space" from GO:0030288
* Deleted synonym "nuclear translocation of MAPK during sporulation (sensu Fungi)" from GO:0030437
* Deleted synonym "nuclear translocation of MAPK during sporulation (sensu Saccharomyces)" from GO:0030437
* Changed definition of GO:0031297 from "The process by which a DNA replication fork that has stalled (due to DNA damage, DNA secondary structure, bound proteins, dNTP shortage, or other causes) is repaired by a recombinational mechanism." to "The process by which a DNA replication fork that has stalled (due to DNA damage, DNA secondary structure, bound proteins, dNTP shortage, or other causes) is repaired and replication is restarted."
* Added definition dbxref PMID:17660542 to GO:0031297
* Added synonym "recovery from replication fork stalling" to GO:0031297
* Changed synonym scope of GO:0031297 from "Related" to "Exact"
* Deleted GO:0031297 --OBO_REL:is_a--> GO:0006310
* Copied GO:0031297 to GO:0006259 with type OBO_REL:is_a
* Changed name of GO:0031925 from "pyridoxal transporter activity" to "pyridoxal transmembrane transporter activity"
* Changed definition of GO:0031925 from "Enables the directed movement of pyridoxal into, out of, within or between cells. Pyridoxal, 3-hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxaldehyde, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate." to "Enables the directed movement of pyridoxal across a membrane into, out of, within or between cells. Pyridoxal, 3-hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxaldehyde, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate."
* Added synonym "pyridoxal transporter activity" to GO:0031925
* Changed synonym scope of GO:0031925 from "Related" to "Broad"
* Copied GO:0031925 to GO:0022891 with type OBO_REL:is_a
* Changed name of GO:0031928 from "pyridoxine transporter activity" to "pyridoxine transmembrane transporter activity"
* Changed definition of GO:0031928 from "Enables the directed movement of pyridoxine into, out of, within or between cells. Pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate." to "Enables the directed movement of pyridoxine across a membrane into, out of, within or between cells. Pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate."
* Added synonym "pyridoxine transporter activity" to GO:0031928
* Changed synonym scope of GO:0031928 from "Related" to "Broad"
* Copied GO:0031928 to GO:0022891 with type OBO_REL:is_a
* Deleted synonym "lysine biosynthetic process via diaminopimelate, dehydrogenase pathway" from GO:0033361
* Deleted synonym "activation of MAPK during sporulation (sensu Fungi)" from GO:0042173
* Deleted synonym "activation of MAPK during sporulation (sensu Saccharomyces)" from GO:0042173
* Deleted synonym "activation of MAPKK during sporulation (sensu Fungi)" from GO:0042173
* Deleted synonym "activation of MAPKK during sporulation (sensu Saccharomyces)" from GO:0042173
* Deleted synonym "activation of MAPKKK during sporulation (sensu Fungi)" from GO:0042173
* Deleted synonym "activation of MAPKKK during sporulation (sensu Saccharomyces)" from GO:0042173
* Deleted synonym "inactivation of MAPK during sporulation (sensu Fungi)" from GO:0042173
* Deleted synonym "inactivation of MAPK during sporulation (sensu Saccharomyces)" from GO:0042173
* Added synonym "replication fork stalling" to GO:0043111
* Changed synonym scope of GO:0043111 from "Related" to "Exact"
* Deleted synonym "activation of MAPK activity" from GO:0043406
* Deleted synonym "protein import into mitochondrial intermembrane space, direct" from GO:0045044
* Deleted synonym "secretin (sensu Bacteria)" from GO:0045203
* Deleted synonym "allatostatin" from GO:0045968
* Deleted synonym "activin" from GO:0046881
* Deleted synonym "aryl-aldehyde dehydrogenase (NADP+) activity" from GO:0047683
* Deleted synonym "D-xylose 1-dehydrogenase (NADP+) activity" from GO:0047837
* Deleted synonym "glucose 1-dehydrogenase (NADP+) activity" from GO:0047935
* Deleted synonym "L-glucuronate reductase activity" from GO:0047939
* Deleted synonym "glycerol 2-dehydrogenase (NADP+) activity" from GO:0047953
* Deleted synonym "lactaldehyde reductase (NADPH) activity" from GO:0050039
* Deleted synonym "mannitol 2-dehydrogenase (NADP+) activity" from GO:0050085
* Deleted synonym "NADH dehydrogenase (quinone) activity" from GO:0050136
* Deleted synonym "pyruvate dehydrogenase (NADP+) activity" from GO:0050243
* Deleted synonym "sorbose 5-dehydrogenase (NADP+) activity" from GO:0050287
* Deleted synonym "trans-2-enoyl-CoA reductase (NAD+) activity" from GO:0050343
* Deleted synonym "tetrachloroethene reductive dehalogenase activity" from GO:0050629
* Deleted synonym "activation of immune response" from GO:0050778
* Deleted synonym "beta-galactosidase stabilization activity" from GO:0050821
* Deleted synonym "membrane-associated guanylate kinase" from GO:0050839
* Deleted synonym "negative regulation of NK T cell activation" from GO:0051134
* Deleted synonym "inhibition of norepinephrine uptake" from GO:0051622
* Copied GO:0051624 to GO:0051622 with type OBO_REL:is_a
* Deleted synonym "sesquiterpene synthase activity" from GO:0051762
* Deleted synonym "acetylenecarboxylate hydratase activity, producing 3-hydroxypropenoate" from GO:0051909


From gocvs at genome.Stanford.EDU  Thu Oct  4 21:30:40 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Thu, 4 Oct 2007 21:30:40 -0700 (PDT)
Subject: [go-diff] GO update 10/04/2007
Message-ID: <200710050430.VAA02057@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.491 by 5.492

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Deleted synonym "bud scar accumulation" from GO:0000282
* Deleted synonym "telomere" from GO:0000782
* Deleted synonym "cell division" from GO:0000910
* Deleted synonym "invasive growth" from GO:0001403
* Deleted synonym "viral host shutoff protein" from GO:0004534
* Deleted synonym "diazepam binding inhibitor activity" from GO:0004857
* Deleted GO:0005963 --OBO_REL:is_a--> GO:0005941
* Copied GO:0005963 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0005963 to GO:0044424 with type OBO_REL:is_a
* Deleted GO:0005964 --OBO_REL:is_a--> GO:0005941
* Copied GO:0005964 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0005964 to GO:0044444 with type OBO_REL:is_a
* Deleted GO:0005969 --OBO_REL:is_a--> GO:0005941
* Copied GO:0005969 to GO:0044444 with type OBO_REL:is_a
* Copied GO:0005969 to GO:0043234 with type OBO_REL:is_a
* Deleted GO:0005970 --OBO_REL:is_a--> GO:0005941
* Copied GO:0005970 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0005970 to GO:0044444 with type OBO_REL:is_a
* Deleted synonym "sesquiterpene metabolic process" from GO:0006714
* Deleted synonym "sesquiterpene metabolism" from GO:0006714
* Deleted synonym "terpene metabolic process" from GO:0006721
* Deleted synonym "terpene metabolism" from GO:0006721
* Deleted synonym "heavy cellular metal ion homeostasis" from GO:0006875
* Added synonym "cellular heavy metal ion homeostasis" to GO:0006875
* Changed synonym scope of GO:0006875 from "Related" to "Narrow"
* Changed name of GO:0008320 from "protein carrier activity" to "protein transmembrane transporter activity"
* Changed definition of GO:0008320 from "Catalysis of the transfer of proteins from one side of a membrane to the other." to "Catalysis of the transfer of a protein from one side of a membrane to the other."
* Added synonym "protein carrier activity" to GO:0008320
* Deleted synonym "cation transmembrane transporter activity" from GO:0008324
* Added synonym "transmembrane cation transporter activity" to GO:0008324
* Changed synonym scope of GO:0008324 from "Related" to "Exact"
* Deleted synonym "unfolded protein response, ligation of mRNA encoding UFP-specific transcription factor by RNA ligase" from GO:0008452
* Deleted synonym "X-His dipeptidase activity" from GO:0008769
* Deleted synonym "murein sacculus" from GO:0009275
* Deleted synonym "peptidoglycan" from GO:0009275
* Deleted synonym "murein sacculus" from GO:0009276
* Deleted synonym "peptidoglycan" from GO:0009276
* Copied GO:0009318 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0009318 to GO:0044424 with type OBO_REL:is_a
* Deleted GO:0009330 --OBO_REL:is_a--> GO:0005941
* Copied GO:0009330 to GO:0044424 with type OBO_REL:is_a
* Copied GO:0009330 to GO:0043234 with type OBO_REL:is_a
* Deleted GO:0009331 --OBO_REL:is_a--> GO:0005941
* Copied GO:0009331 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0009331 to GO:0044444 with type OBO_REL:is_a
* Deleted GO:0009332 --OBO_REL:is_a--> GO:0005941
* Copied GO:0009332 to GO:0044444 with type OBO_REL:is_a
* Copied GO:0009332 to GO:0043234 with type OBO_REL:is_a
* Deleted GO:0009336 --OBO_REL:is_a--> GO:0005941
* Copied GO:0009336 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0009336 to GO:0044444 with type OBO_REL:is_a
* Copied GO:0009338 to GO:0044424 with type OBO_REL:is_a
* Copied GO:0009338 to GO:0043234 with type OBO_REL:is_a
* Deleted GO:0009339 --OBO_REL:is_a--> GO:0005941
* Copied GO:0009339 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0009339 to GO:0044444 with type OBO_REL:is_a
* Deleted GO:0009344 --OBO_REL:is_a--> GO:0005941
* Copied GO:0009344 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0009344 to GO:0044464 with type OBO_REL:is_a
* Deleted GO:0009357 --OBO_REL:is_a--> GO:0005941
* Copied GO:0009357 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0009357 to GO:0044444 with type OBO_REL:is_a
* Deleted synonym "antiviral response" from GO:0009615
* Copied GO:0009703 to GO:0008940 with type OBO_REL:is_a
* Deleted synonym "proline/glycine/betaine:hydrogen/sodium symporter activity" from GO:0015294
* Deleted synonym "betaine/GABA:sodium symporter activity" from GO:0015370
* Changed name of GO:0015450 from "protein transmembrane transporter activity" to "P-P-bond-hydrolysis-driven protein transmembrane transporter activity"
* Deleted synonym "chloroplast envelope protein translocase" from GO:0015450
* Deleted synonym "mitochondrial protein translocase" from GO:0015450
* Copied GO:0015450 to GO:0008320 with type OBO_REL:is_a
* Deleted synonym "sesquiterpene catabolic process" from GO:0016107
* Deleted synonym "sesquiterpene catabolism" from GO:0016107
* Deleted GO:0016222 --OBO_REL:is_a--> GO:0005941
* Copied GO:0016222 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0016222 to GO:0044444 with type OBO_REL:is_a
* Added comment "This term was made obsolete because, according to the Enzyme Commission, there is no evidence that this enzymatic activity exists."
* Deleted GO:0018512 --OBO_REL:is_a--> GO:0016628
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at a8422d
* Deleted GO:0021733 --OBO_REL:is_a--> GO:0021545
* Destroyed object GO:0021733
* Deleted GO:0021734 --OBO_REL:is_a--> GO:0021545
* Destroyed object GO:0021734
* Deleted synonym "lateral geniculate nucleus development" from GO:0021771
* Deleted synonym "T cell differentiation" from GO:0030217
* Added synonym "T-cell development" to GO:0030217
* Changed synonym scope of GO:0030217 from "Related" to "Exact"
* Deleted synonym "11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity" from GO:0030766
* Deleted synonym "heterotrimeric G-protein GTPase, alpha-subunit" from GO:0031680
* Deleted GO:0031680 --OBO_REL:is_a--> GO:0005941
* Copied GO:0031680 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0031680 to GO:0044444 with type OBO_REL:is_a
* Deleted synonym "vitamin A metabolic process" from GO:0042573
* Deleted synonym "vitamin A metabolism" from GO:0042573
* Deleted synonym "vitamin A metabolic process" from GO:0042574
* Deleted synonym "vitamin A metabolism" from GO:0042574
* Deleted synonym "prospore" from GO:0042763
* Deleted synonym "vitamin A metabolic process" from GO:0042905
* Deleted synonym "vitamin A metabolism" from GO:0042905
* Added synonym "heterophil degranulation" to GO:0043312
* Added comment "Note that the presence of exogenous double-stranded RNA is usually indicative of a viral infection. Consider also annotating to 'response to virus ; GO:0009615'."
* Changed definition of GO:0043330 from "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus, which is usually indicative of a viral infection." to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus."
* Deleted GO:0043330 --OBO_REL:is_a--> GO:0009615
* Deleted synonym "NEDD8 class-dependent protein catabolic process" from GO:0045116
* Deleted synonym "NEDD8 class-dependent protein catabolism" from GO:0045116
* Deleted synonym "protein neddylation during NEDD8 class-dependent protein catabolic process" from GO:0045116
* Deleted synonym "protein neddylation during NEDD8 class-dependent protein catabolism" from GO:0045116
* Deleted synonym "naringenin 3-dioxygenase activity" from GO:0045486
* Changed name of GO:0045499 from "chemorepellant activity" to "chemorepellent activity"
* Deleted synonym "chemorepellent activity" from GO:0045499
* Added synonym "chemorepellant activity" to GO:0045499
* Changed synonym scope of GO:0045499 from "Related" to "Exact"
* Deleted synonym "negative regulation of Notch signaling pathway" from GO:0045746
* Added synonym "negative regulation of Notch signalling pathway" to GO:0045746
* Changed synonym scope of GO:0045746 from "Related" to "Exact"
* Deleted synonym "isoflavone 2'-hydroxylase activity" from GO:0047957
* Added comment "This term was added by GO_REF:0000021."
* added secondary id GO:0021734 to GO:0048909
* Added definition dbxref GOC:cls to GO:0048909
* Added definition dbxref GOC:dgh to GO:0048909
* Added definition dbxref GOC:dph to GO:0048909
* Added definition dbxref GOC:jic to GO:0048909
* Added definition dbxref GOC:mtg_15jun06 to GO:0048909
* Added synonym "ALLN development" to GO:0048909
* Changed synonym scope of GO:0048909 from "Related" to "Exact"
* Added synonym "rostral lateral line nerve development" to GO:0048909
* Changed synonym scope of GO:0048909 from "Related" to "Exact"
* Added comment "This term was added by GO_REF:0000021."
* added secondary id GO:0021733 to GO:0048918
* Added definition dbxref GOC:cls to GO:0048918
* Added definition dbxref GOC:dgh to GO:0048918
* Added definition dbxref GOC:dph to GO:0048918
* Added definition dbxref GOC:jic to GO:0048918
* Added definition dbxref GOC:mtg_15jun06 to GO:0048918
* Added synonym "caudal lateral line nerve development" to GO:0048918
* Changed synonym scope of GO:0048918 from "Related" to "Exact"
* Added synonym "PLLN development" to GO:0048918
* Changed synonym scope of GO:0048918 from "Related" to "Exact"
* Deleted synonym "N-acetyl-beta-alanine deacetylase activity" from GO:0050117
* Deleted synonym "oxoglutarate dehydrogenase (NADP+) activity" from GO:0050164
* Copied GO:0050463 to GO:0008940 with type OBO_REL:is_a
* Copied GO:0050464 to GO:0008940 with type OBO_REL:is_a
* Changed name of GO:0050688 from "regulation of antiviral response" to "regulation of defense response to virus"
* Deleted synonym "regulation of response to virus" from GO:0050688
* Added synonym "regulation of antiviral response" to GO:0050688
* Changed synonym scope of GO:0050688 from "Related" to "Exact"
* Deleted GO:0050688 --part_of--> GO:0009615
* Copied GO:0050688 to GO:0051607 with type part_of
* Deleted GO:0050691 --part_of--> GO:0051607
* Deleted synonym "diazepam binding inhibitor activity" from GO:0050796
* Deleted synonym "diazepam binding inhibitor activity" from GO:0050810
* Deleted synonym "diazepam binding inhibitor activity" from GO:0050812
* Deleted synonym "viral-cell fusion molecule activity" from GO:0050839
* Deleted synonym "chemorepellant activity" from GO:0050929
* Deleted synonym "inhibition of dopamine uptake" from GO:0051585
* Added synonym "antiviral response" to GO:0051607
* Changed synonym scope of GO:0051607 from "Related" to "Exact"
* Copied GO:0051607 to GO:0002252 with type OBO_REL:is_a
* Deleted synonym "inhibition of serotonin uptake" from GO:0051612
* Deleted synonym "heavy cellular metal ion homeostasis" from GO:0055065


From gocvs at genome.Stanford.EDU  Fri Oct  5 21:30:41 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Fri, 5 Oct 2007 21:30:41 -0700 (PDT)
Subject: [go-diff] GO update 10/05/2007
Message-ID: <200710060430.VAA18207@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.492 by 5.493

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Deleted synonym "dopachrome isomerase activity" from GO:0004167
* Deleted synonym "glutamate synthase (NADPH) activity" from GO:0004355
* Deleted synonym "sevenless receptor activity" from GO:0004926
* Deleted synonym "bacteriocin activity" from GO:0005102
* Deleted synonym "adhesive extracellular matrix constituent" from GO:0005578
* Deleted GO:0005750 --OBO_REL:is_a--> GO:0045285
* Deleted synonym "mitotic sister-chromatid adhesion release" from GO:0007064
* Deleted synonym "Wnt receptor signaling pathway" from GO:0007223
* Deleted synonym "Wnt receptor signalling pathway" from GO:0007223
* Deleted synonym "tRNA (guanosine-2'-O-)-methyltransferase activity" from GO:0009020
* Deleted synonym "mitochondrial alpha-ketoglutarate/malate transport" from GO:0015367
* Deleted synonym "Wnt receptor signaling pathway" from GO:0016055
* Deleted synonym "acquired immune response" from GO:0016064
* Deleted synonym "adaptive immune response" from GO:0016064
* Deleted synonym "terpene catabolic process" from GO:0016115
* Deleted synonym "terpene catabolism" from GO:0016115
* Deleted synonym "detection of nuclear:cytoplasmic ratio" from GO:0016475
* Deleted synonym "lysine biosynthesis via diaminopimelic acid, diaminopimelate-aminotransferase pathway" from GO:0033362
* Deleted synonym "ATPase activity, coupled to transmembrane movement of ions" from GO:0042625
* Deleted synonym "histone lysine N-methyltransferase activity (H3-K24 specific)" from GO:0042800
* added secondary id GO:0045285 to GO:0045275
* Added synonym "ubiquinol-cytochrome-c reductase complex" to GO:0045275
* Changed synonym scope of GO:0045275 from "Related" to "Exact"
* added secondary id GO:0045286 to GO:0045276
* Added synonym "plasma membrane ubiquinol-cytochrome-c reductase complex" to GO:0045276
* Changed synonym scope of GO:0045276 from "Related" to "Exact"
* Added synonym "ubiquinol-cytochrome-c reductase complex (sensu Bacteria)" to GO:0045276
* Changed synonym scope of GO:0045276 from "Related" to "Exact"
* Deleted GO:0045285 --OBO_REL:is_a--> GO:0044424
* Deleted GO:0045285 --OBO_REL:is_a--> GO:0043234
* Deleted GO:0045285 --part_of--> GO:0045275
* Deleted GO:0005750 --OBO_REL:is_a--> GO:0045285
* Deleted GO:0045286 --OBO_REL:is_a--> GO:0045285
* Destroyed object GO:0045285
* Deleted GO:0045286 --OBO_REL:is_a--> GO:0044459
* Deleted GO:0045286 --part_of--> GO:0045276
* Deleted GO:0045286 --OBO_REL:is_a--> GO:0045285
* Destroyed object GO:0045286
* Deleted synonym "hydrogen ion transporting ATPase activity, rotational mechanism" from GO:0046961
* Added synonym "proton-transporting ATPase activity, rotational mechanism" to GO:0046961
* Changed synonym scope of GO:0046961 from "Related" to "Exact"
* Deleted synonym "sterigmatocystin 7-O-methyltransferase activity" from GO:0047146
* Deleted synonym "galactose 1-dehydrogenase (NADP+) activity" from GO:0047910
* Deleted synonym "hypophysis morphogenesis" from GO:0048850
* Deleted synonym "chemoattractant activity" from GO:0050930
* Deleted synonym "negative regulation of NK T cell proliferation" from GO:0051141
* Deleted synonym "activation of monopolar cell growth" from GO:0051515
* Deleted synonym "pathogen-associated molecular pattern dependent induction by organism of innate immunity of other organism during symbiotic interaction" from GO:0052257
* Deleted synonym "positive regulation by organism of defense-related symbiont cell wall callose deposition" from GO:0052505


From gocvs at genome.Stanford.EDU  Mon Oct  8 21:30:42 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Mon, 8 Oct 2007 21:30:42 -0700 (PDT)
Subject: [go-diff] GO update 10/08/2007
Message-ID: <200710090430.VAA09536@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.493 by 5.494

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0033612
* Created object of type obo:TERM with id GO:0033613
* Created object of type obo:TERM with id GO:0033614
* Created object of type obo:TERM with id GO:0033615
* Created object of type obo:TERM with id GO:0033616
* Created object of type obo:TERM with id GO:0033617
* Created object of type obo:TERM with id GO:0033618
* Populated new object GO:0033612 (macro)
  * Changed name of GO:0033612 from "<new term>" to "receptor serine/threonine kinase binding"
  * Set definition of GO:0033612 to "Interacting selectively with a receptor that possesses protein serine/threonine kinase activity."
  * Added definition dbxref GOC:mah to GO:0033612
  * Added synonym "transmembrane receptor protein serine/threonine kinase ligand binding" to GO:0033612
  * Copied GO:0033612 to GO:0005102 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033612
* Populated new object GO:0033613 (macro)
  * Changed name of GO:0033613 from "<new term>" to "transcription activator binding"
  * Set definition of GO:0033613 to "Interacting selectively with a transcription activator, any protein whose activity is required to initiate or upregulate transcription."
  * Added definition dbxref GOC:mah to GO:0033613
  * Copied GO:0033613 to GO:0005515 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033613
* Populated new object GO:0033614 (macro)
  * Changed name of GO:0033614 from "<new term>" to "chloroplast proton-transporting ATP synthase complex assembly"
  * Set definition of GO:0033614 to "The aggregation and bonding together of a proton-transporting ATP synthase in the chloroplast thylakoid membrane."
  * Added definition dbxref GOC:mah to GO:0033614
  * Copied GO:0033614 to GO:0009658 with type part_of
  * Copied GO:0033614 to GO:0043461 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033614
* Populated new object GO:0033615 (macro)
  * Changed name of GO:0033615 from "<new term>" to "mitochondrial proton-transporting ATP synthase complex assembly"
  * Set definition of GO:0033615 to "The aggregation and bonding together of a proton-transporting ATP synthase in the mitochondrial inner membrane."
  * Added definition dbxref GOC:mah to GO:0033615
  * Copied GO:0033615 to GO:0043461 with type OBO_REL:is_a
  * Copied GO:0033615 to GO:0007005 with type part_of
  * Assigned namespace "biological_process" to GO:0033615
* Populated new object GO:0033616 (macro)
  * Changed name of GO:0033616 from "<new term>" to "plasma membrane proton-transporting ATP synthase complex assembly"
  * Set definition of GO:0033616 to "The aggregation and bonding together of a proton-transporting ATP synthase in the plasma membrane."
  * Added definition dbxref GOC:mah to GO:0033616
  * Copied GO:0033616 to GO:0043461 with type OBO_REL:is_a
  * Copied GO:0033616 to GO:0007009 with type part_of
  * Assigned namespace "biological_process" to GO:0033616
* Populated new object GO:0033617 (macro)
  * Changed name of GO:0033617 from "<new term>" to "mitochondrial respiratory chain complex IV assembly"
  * Set definition of GO:0033617 to "The aggregation and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase) in the mitochondrial inner membrane."
  * Added definition dbxref GOC:mah to GO:0033617
  * Added GO:0033617 to category gosubset_prok
  * Added synonym "mitochondrial cytochrome c oxidase biogenesis" to GO:0033617
  * Changed synonym scope of GO:0033617 from "Related" to "Broad"
  * Added synonym "mitochondrial cytochrome c oxidase complex assembly" to GO:0033617
  * Changed synonym scope of GO:0033617 from "Related" to "Exact"
  * Copied GO:0033617 to GO:0008535 with type OBO_REL:is_a
  * Copied GO:0033617 to GO:0033108 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033617
* Populated new object GO:0033618 (macro)
  * Changed name of GO:0033618 from "<new term>" to "plasma membrane respiratory chain complex IV assembly"
  * Set definition of GO:0033618 to "The aggregation and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase) in the plasma membrane."
  * Added definition dbxref GOC:mah to GO:0033618
  * Added GO:0033618 to category gosubset_prok
  * Added synonym "plasma membrane cytochrome c oxidase biogenesis" to GO:0033618
  * Changed synonym scope of GO:0033618 from "Related" to "Broad"
  * Added synonym "plasma membrane cytochrome c oxidase complex assembly" to GO:0033618
  * Changed synonym scope of GO:0033618 from "Related" to "Exact"
  * Copied GO:0033618 to GO:0007009 with type part_of
  * Copied GO:0033618 to GO:0008535 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033618
* Deleted synonym "RAB small monomeric GTPase activity" from GO:0003924
* Deleted synonym "RAN small monomeric GTPase activity" from GO:0003924
* Deleted synonym "RAS small monomeric GTPase activity" from GO:0003924
* Deleted synonym "SAR small monomeric GTPase activity" from GO:0003924
* Added synonym "Rab small monomeric GTPase activity" to GO:0003924
* Changed synonym scope of GO:0003924 from "Related" to "Narrow"
* Added synonym "Ran small monomeric GTPase activity" to GO:0003924
* Changed synonym scope of GO:0003924 from "Related" to "Narrow"
* Added synonym "Ras small monomeric GTPase activity" to GO:0003924
* Changed synonym scope of GO:0003924 from "Related" to "Narrow"
* Added synonym "Sar small monomeric GTPase activity" to GO:0003924
* Changed synonym scope of GO:0003924 from "Related" to "Narrow"
* Deleted synonym "pyridoxamine-phosphate oxidase activity" from GO:0004733
* Deleted synonym "polyamine transmembrane transporter activity" from GO:0005275
* Copied GO:0006839 to GO:0007005 with type part_of
* Deleted synonym "vesicle-fusing ATPase activity" from GO:0006944
* Deleted synonym "proteasome endopeptidase activity" from GO:0008233
* Changed name of GO:0008535 from "cytochrome c oxidase complex assembly" to "respiratory chain complex IV assembly"
* Changed definition of GO:0008535 from "The aggregation and bonding together of a set of components to form cytochrome c oxidase, the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms." to "The aggregation and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase), the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms."
* Added synonym "cytochrome c oxidase complex assembly" to GO:0008535
* Changed synonym scope of GO:0008535 from "Related" to "Exact"
* Deleted synonym "ARF small monomeric GTPase activity" from GO:0016192
* Deleted synonym "RAB small monomeric GTPase activity" from GO:0016192
* Deleted synonym "vesicle-fusing ATPase activity" from GO:0016192
* Deleted GO:0032472 --OBO_REL:is_a--> GO:0006839
* Copied GO:0032472 to GO:0046907 with type OBO_REL:is_a
* Deleted synonym "vesicle-fusing ATPase activity" from GO:0042623
* Changed name of GO:0043461 from "F-type ATPase complex assembly" to "proton-transporting ATP synthase complex assembly"
* Changed definition of GO:0043461 from "The aggregation and bonding together of F-type ATPase, a multi-subunit proton-transporting ATPase found in the inner membrane of mitochondria and chloroplasts, and in bacterial plasma membranes." to "The aggregation and bonding together of a proton-transporting ATP synthase (also known as F-type ATPase), a two-sector ATPase found in the inner membrane of mitochondria and chloroplasts, and in bacterial plasma membranes."
* Added definition dbxref GOC:mah to GO:0043461
* Added synonym "F-type ATPase complex assembly" to GO:0043461
* Changed synonym scope of GO:0043461 from "Related" to "Exact"
* Deleted synonym "terpene synthase activity" from GO:0046246
* Deleted synonym "4-amino-4-deoxychorismate synthase activity" from GO:0046820
* Deleted synonym "follicle-stimulating hormone secretion" from GO:0046879
* Deleted synonym "FSH secretion" from GO:0046879
* Added synonym "FSH secretion" to GO:0046884
* Changed synonym scope of GO:0046884 from "Related" to "Exact"
* Deleted synonym "glucose 1-dehydrogenase (NAD+) activity" from GO:0047934
* Changed definition of GO:0048786 from "A specialized presynaptic plasma membrane region where synaptic vesicles dock and fuse." to "A specialized region of the plasma membrane and cell cortex of a presynaptic neuron; encompasses a region of the plasma membrane where synaptic vesicles dock and fuse, synaptic vesicles, and a specialized cortical cytoskeletal matrix."
* Changed name of GO:0048787 from "active zone presynaptic plasma membrane" to "presynaptic active zone membrane"
* Changed definition of GO:0048787 from "The active zone is a specialized site of the presynaptic plasma membrane where docking and fusion of synaptic vesicles occurs for the release of neurotransmitters." to "The membrane portion of the presynaptic active zone; it is the site where docking and fusion of synaptic vesicles occurs for the release of neurotransmitters."
* Deleted synonym "CAZ plasma membrane" from GO:0048787
* Added synonym "active zone presynaptic plasma membrane" to GO:0048787
* Changed synonym scope of GO:0048787 from "Related" to "Exact"
* Copied GO:0048787 to GO:0048786 with type part_of
* Copied GO:0048788 to GO:0048786 with type part_of
* Deleted synonym "spindle midzone assembly involved in meiosis" from GO:0051257
* Added synonym "spindle midzone biosynthesis involved in meiosis" to GO:0051257
* Changed synonym scope of GO:0051257 from "Related" to "Exact"
* Deleted GO:0051384 --OBO_REL:is_a--> GO:0048545
* Copied GO:0051384 to GO:0031960 with type OBO_REL:is_a
* Deleted GO:0051385 --OBO_REL:is_a--> GO:0048545
* Copied GO:0051385 to GO:0031960 with type OBO_REL:is_a


From gocvs at genome.Stanford.EDU  Tue Oct  9 21:30:41 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Tue, 9 Oct 2007 21:30:41 -0700 (PDT)
Subject: [go-diff] GO update 10/09/2007
Message-ID: <200710100430.VAA24681@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.494 by 5.497

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Changed name of GO:0000335 from "negative regulation of DNA transposition" to "negative regulation of transposition, DNA mediated"
* Added definition dbxref GOC:dph to GO:0000335
* Added synonym "negative regulation of DNA transposition" to GO:0000335
* Added general dbxref GOC:dph to synonym negative regulation of DNA transposition of GO:0000335
* Changed synonym scope of GO:0000335 from "Related" to "Exact"
* Changed name of GO:0000336 from "positive regulation of DNA transposition" to "positive regulation of transposition, DNA-mediated"
* Added definition dbxref GOC:dph to GO:0000336
* Added synonym "positive regulation of DNA transposition" to GO:0000336
* Added general dbxref GOC:dph to synonym positive regulation of DNA transposition of GO:0000336
* Changed synonym scope of GO:0000336 from "Related" to "Exact"
* Changed name of GO:0000337 from "regulation of DNA transposition" to "regulation of transposition, DNA-mediated"
* Added definition dbxref GOC:dph to GO:0000337
* Added synonym "regulation of DNA transposition" to GO:0000337
* Added general dbxref GOC:dph to synonym regulation of DNA transposition of GO:0000337
* Changed synonym scope of GO:0000337 from "Related" to "Exact"
* Added synonym "DNA transposition" to GO:0006313
* Added general dbxref GOC:dph to synonym DNA transposition of GO:0006313
* Changed synonym scope of GO:0006313 from "Related" to "Exact"
* Deleted GO:0007175 --OBO_REL:is_a--> GO:0009968
* Copied GO:0007175 to GO:0042059 with type OBO_REL:is_a
* Added definition dbxref GOC:dph to GO:0007176
* Deleted GO:0007176 --part_of--> GO:0007173
* Deleted GO:0007176 --OBO_REL:is_a--> GO:0009966
* Copied GO:0007176 to GO:0042058 with type OBO_REL:is_a
* Copied GO:0007176 to GO:0065009 with type OBO_REL:is_a
* Deleted synonym "protein carrier activity" from GO:0008320
* Added synonym "protein carrier activity" to GO:0008565
* Changed synonym scope of GO:0008565 from "Related" to "Exact"
* Changed definition of GO:0008611 from "The chemical reactions and pathways resulting in the formation of ether lipids, lipids that contain (normally) one fatty alcohol in ether linkage to one of the carbon atoms (normally C-1) of glycerol." to "The chemical reactions and pathways resulting in the formation of ether lipids, lipids that contain (normally) one lipid alcohol in ether linkage to one of the carbon atoms (normally C-1) of glycerol."
* Added definition dbxref PMID:15337120 to GO:0008611
* Deleted GO:0009318 --OBO_REL:is_a--> GO:0005941
* Deleted GO:0009338 --OBO_REL:is_a--> GO:0005941
* Deleted GO:0015266 --OBO_REL:is_a--> GO:0008565
* Copied GO:0015266 to GO:0008320 with type OBO_REL:is_a
* Deleted GO:0015450 --OBO_REL:is_a--> GO:0008565
* Added definition dbxref GOC:dph to GO:0022898
* Added definition dbxref GOC:mtg_cardio to GO:0022898
* Copied GO:0022898 to GO:0032409 with type OBO_REL:is_a
* Changed name of GO:0031585 from "regulation of IP3 receptor activity" to "regulation of inositol-1,4,5-triphosphate receptor activity"
* Added definition dbxref GOC:dph to GO:0031585
* Added synonym "regulation of IP3 receptor activity" to GO:0031585
* Added general dbxref GOC:dph to synonym regulation of IP3 receptor activity of GO:0031585
* Changed synonym scope of GO:0031585 from "Related" to "Exact"
* Changed name of GO:0031586 from "negative regulation of IP3 receptor activity" to "negative regulation of inositol-1,4,5-triphosphate receptor activity"
* Added definition dbxref GOC:dph to GO:0031586
* Added synonym "negative regulation of IP3 receptor activity" to GO:0031586
* Added general dbxref GOC:dph to synonym negative regulation of IP3 receptor activity of GO:0031586
* Changed name of GO:0031587 from "positive regulation of IP3 receptor activity" to "positive regulation of inositol-1,4,5-triphosphate receptor activity"
* Added definition dbxref GOC:dph to GO:0031587
* Added synonym "positive regulation of IP3 receptor activity" to GO:0031587
* Added general dbxref GOC:dph to synonym positive regulation of IP3 receptor activity of GO:0031587
* Changed synonym scope of GO:0031587 from "Related" to "Exact"
* Changed name of GO:0032084 from "regulation of Type I restriction endodeoxyribonuclease activity" to "regulation of Type I site-specific deoxyribonuclease activity"
* Added definition dbxref GOC:dph to GO:0032084
* Added synonym "regulation of Type I restriction endodeoxyribonuclease activity" to GO:0032084
* Added general dbxref GOC:dph to synonym regulation of Type I restriction endodeoxyribonuclease activity of GO:0032084
* Changed synonym scope of GO:0032084 from "Related" to "Exact"
* Changed name of GO:0032085 from "regulation of Type II restriction endodeoxyribonuclease activity" to "regulation of Type II site-specific deoxyribonuclease activity"
* Added definition dbxref GOC:dph to GO:0032085
* Added synonym "regulation of Type II restriction endodeoxyribonuclease activity" to GO:0032085
* Added general dbxref GOC:dph to synonym regulation of Type II restriction endodeoxyribonuclease activity of GO:0032085
* Changed synonym scope of GO:0032085 from "Related" to "Exact"
* Changed name of GO:0032086 from "regulation of Type III restriction endodeoxyribonuclease activity" to "regulation of Type III site-specific deoxyribonuclease activity"
* Added definition dbxref GOC:dph to GO:0032086
* Added synonym "regulation of Type III restriction endoribonuclease activity" to GO:0032086
* Added general dbxref GOC:dph to synonym regulation of Type III restriction endoribonuclease activity of GO:0032086
* Changed synonym scope of GO:0032086 from "Related" to "Exact"
* Changed name of GO:0032087 from "regulation of Type IV restriction endodeoxyribonuclease activity" to "regulation of Type IV site-specific deoxyribonuclease activity"
* Added synonym "regulation of Type IV restriction endodeoxyribonuclease activity" to GO:0032087
* Added general dbxref GOC:dph to synonym regulation of Type IV restriction endodeoxyribonuclease activity of GO:0032087
* Changed synonym scope of GO:0032087 from "Related" to "Exact"
* Deleted GO:0032409 --OBO_REL:is_a--> GO:0050789
* Copied GO:0032409 to GO:0065009 with type OBO_REL:is_a
* Deleted GO:0032590 --OBO_REL:is_a--> GO:0031256
* Deleted GO:0032591 --OBO_REL:is_a--> GO:0031256
* Changed name of GO:0043405 from "regulation of MAPK activity" to "regulation of MAP kinase activity"
* Added definition dbxref GOC:dph to GO:0043405
* Added synonym "Regulation of MAPK activity" to GO:0043405
* Added general dbxref GOC:dph to synonym Regulation of MAPK activity of GO:0043405
* Changed synonym scope of GO:0043405 from "Related" to "Exact"
* Changed name of GO:0043406 from "positive regulation of MAPK activity" to "positive regulation of MAP kinase activity"
* Added definition dbxref GOC:dph to GO:0043406
* Changed name of GO:0043407 from "negative regulation of MAPK activity" to "negative regulation of MAP kinase activity"
* Added definition dbxref GOC:dph to GO:0043407
* Copied GO:0043487 to GO:0065008 with type OBO_REL:is_a
* Changed name of GO:0045463 from "R8 development" to "R8 cell development"
* Changed name of GO:0045467 from "R7 development" to "R7 cell development"
* Changed name of GO:0045468 from "regulation of R8 spacing" to "R8 cell spacing in compound eye"
* Changed definition of GO:0045468 from "Any process that modulates the frequency, rate or extent of the spacing of the R8 cells, ensuring that the R8 cells are selected in a precise progressive pattern so that they are evenly spaced throughout the eye disc." to "Any process that ensures that the R8 cells are selected in a precise progressive pattern so that they are evenly spaced throughout the eye disc."
* Added synonym "regulation of R8 spacing" to GO:0045468
* Added general dbxref GOC:dph to synonym regulation of R8 spacing of GO:0045468
* Changed synonym scope of GO:0045468 from "Related" to "Exact"
* Deleted GO:0045468 --OBO_REL:is_a--> GO:0050789
* Copied GO:0045468 to GO:0007389 with type OBO_REL:is_a
* Changed name of GO:0045676 from "regulation of R7 differentiation" to "regulation of R7 cell differentiation"
* Changed name of GO:0045679 from "regulation of R8 differentiation" to "regulation of R8 cell differentiation"
* Deleted GO:0045741 --OBO_REL:is_a--> GO:0009967
* Copied GO:0045741 to GO:0045742 with type OBO_REL:is_a
* Changed definition of GO:0046485 from "The chemical reactions and pathways involving ether lipids, lipids that contain (normally) one fatty alcohol in ether linkage to one of the carbon atoms (normally C-1) of glycerol." to "The chemical reactions and pathways involving ether lipids, lipids that contain (normally) one lipid alcohol in ether linkage to one of the carbon atoms (normally C-1) of glycerol."
* Added definition dbxref PMID:15337120 to GO:0046485
* Deleted GO:0050587 --OBO_REL:is_a--> GO:0016491
* Changed name of GO:0051083 from "cotranslational protein folding" to "'de novo' cotranslational protein folding"
* Deleted synonym "co-translational protein folding" from GO:0051083
* Added synonym "'de novo' co-translational protein folding" to GO:0051083
* Changed synonym scope of GO:0051083 from "Related" to "Exact"
* Changed name of GO:0051084 from "posttranslational protein folding" to "'de novo' posttranslational protein folding"
* Deleted synonym "post-translational protein folding" from GO:0051084
* Added synonym "'de novo' post-translational protein folding" to GO:0051084
* Changed synonym scope of GO:0051084 from "Related" to "Exact"
* Deleted GO:0051084 --OBO_REL:is_a--> GO:0006457
* Copied GO:0051084 to GO:0006458 with type OBO_REL:is_a
* Copied GO:0051090 to GO:0065009 with type OBO_REL:is_a


From gocvs at genome.Stanford.EDU  Wed Oct 10 21:30:40 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Wed, 10 Oct 2007 21:30:40 -0700 (PDT)
Subject: [go-diff] GO update 10/10/2007
Message-ID: <200710110430.VAA08126@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.497 by 5.500

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010448
* Created object of type obo:TERM with id GO:0010449
* Created object of type obo:TERM with id GO:0010450
* Created object of type obo:TERM with id GO:0010451
* Populated new object GO:0010448 (macro)
  * Changed name of GO:0010448 from "<new term>" to "vegetative meristem growth"
  * Set definition of GO:0010448 to "The increase in size or mass of a vegetative meristem, a population of undifferentiated cells in a plant shoot which maintains a continuous balance between the production of stem cells and the incorporation of their derivatives into lateral organ primordia."
  * Added definition dbxref GOC:tb to GO:0010448
  * Added definition dbxref ISBN:0849397928 to GO:0010448
  * Copied GO:0010448 to GO:0048367 with type part_of
  * Copied GO:0010448 to GO:0035266 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010448
* Populated new object GO:0010449 (macro)
  * Changed name of GO:0010449 from "<new term>" to "root meristem growth"
  * Set definition of GO:0010449 to "The increase in size or mass of a root meristem, a population of undifferentiated cells in a plant root which maintains a continuous balance between the production of stem cells and the incorporation of their derivatives into the growth of the root."
  * Added definition dbxref GOC:tb to GO:0010449
  * Copied GO:0010449 to GO:0035266 with type OBO_REL:is_a
  * Copied GO:0010449 to GO:0048364 with type part_of
  * Assigned namespace "biological_process" to GO:0010449
* Populated new object GO:0010450 (macro)
  * Changed name of GO:0010450 from "<new term>" to "inflorescence meristem growth"
  * Set definition of GO:0010450 to "The increase in size or mass of an inflorescence meristem, a population of undifferentiated cells in a plant shoot which produces small leaves and then floral meristems, which will give rise to flowers."
  * Added definition dbxref GOC:tb to GO:0010450
  * Copied GO:0010450 to GO:0035266 with type OBO_REL:is_a
  * Copied GO:0010450 to GO:0010229 with type part_of
  * Assigned namespace "biological_process" to GO:0010450
* Populated new object GO:0010451 (macro)
  * Changed name of GO:0010451 from "<new term>" to "floral meristem growth"
  * Set definition of GO:0010451 to "The increase in size or mass of a floral meristem, a population of undifferentiated cells in a plant that gives rise to a flower."
  * Added definition dbxref GOC:tb to GO:0010451
  * Copied GO:0010451 to GO:0009908 with type part_of
  * Copied GO:0010451 to GO:0035266 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010451
* Deleted synonym "methionine synthase activity" from GO:0003961
* Deleted synonym "dihydrolipoyl dehydrogenase complex" from GO:0004148
* Deleted synonym "transcription-activating factor, 30kD" from GO:0005669
* Deleted synonym "plasma membrane copper transporter" from GO:0005886
* Changed name of GO:0006990 from "unfolded protein response, positive regulation of target gene transcription" to "positive regulation of transcription of target genes involved in unfolded protein response"
* Added definition dbxref GOC:tb to GO:0006990
* Added synonym "unfolded protein response, positive regulation of target gene transcription" to GO:0006990
* Added general dbxref GOC:tb to synonym unfolded protein response, positive regulation of target gene transcription of GO:0006990
* Changed synonym scope of GO:0006990 from "Related" to "Exact"
* Deleted synonym "amine oxidase activity" from GO:0008131
* Deleted synonym "RAN-binding protein" from GO:0008536
* Added synonym "Ran-binding protein" to GO:0008536
* Deleted synonym "methionine synthetase activity" from GO:0008705
* Changed name of GO:0010058 from "regulation of atrichoblast fate" to "regulation of atrichoblast fate specification"
* Deleted GO:0010058 --OBO_REL:is_a--> GO:0050789
* Copied GO:0010058 to GO:0042659 with type OBO_REL:is_a
* Changed name of GO:0010059 from "positive regulation of atrichoblast fate" to "positive regulation of atrichoblast fate specification"
* Changed name of GO:0010060 from "negative regulation of atrichoblast fate" to "negative regulation of atrichoblast fate specification"
* Changed name of GO:0010061 from "regulation of trichoblast fate" to "regulation of trichoblast fate specification"
* Changed name of GO:0010062 from "negative regulation of trichoblast fate" to "negative regulation of trichoblast fate specification"
* Changed name of GO:0010063 from "positive regulation of trichoblast fate" to "positive regulation of trichoblast fate specification"
* Changed name of GO:0010075 from "regulation of meristem size" to "regulation of meristem growth"
* Deleted synonym "regulation of meristem growth" from GO:0010075
* Added synonym "regulation of meristem size" to GO:0010075
* Added general dbxref GOC:tb to synonym regulation of meristem size of GO:0010075
* Changed synonym scope of GO:0010075 from "Related" to "Exact"
* Changed name of GO:0010080 from "regulation of floral meristem size" to "regulation of floral meristem growth"
* Added synonym "regulation of floral meristem size" to GO:0010080
* Changed synonym scope of GO:0010080 from "Related" to "Exact"
* Copied GO:0010080 to GO:0010451 with type part_of
* Changed name of GO:0010081 from "regulation of inflorescence meristem size" to "regulation of inflorescence meristem growth"
* Added synonym "regulation of inflorescence meristem size" to GO:0010081
* Added general dbxref GOC:tb to synonym regulation of inflorescence meristem size of GO:0010081
* Changed synonym scope of GO:0010081 from "Related" to "Exact"
* Copied GO:0010081 to GO:0010450 with type part_of
* Changed name of GO:0010082 from "regulation of root meristem size" to "regulation of root meristem growth"
* Added synonym "regulation of root meristem size" to GO:0010082
* Added general dbxref GOC:tb to synonym regulation of root meristem size of GO:0010082
* Changed synonym scope of GO:0010082 from "Related" to "Exact"
* Copied GO:0010082 to GO:0010449 with type part_of
* Changed name of GO:0010083 from "regulation of vegetative meristem size" to "regulation of vegetative meristem growth"
* Added synonym "regulation of vegetative meristem size" to GO:0010083
* Added general dbxref GOC:tb to synonym regulation of vegetative meristem size of GO:0010083
* Changed synonym scope of GO:0010083 from "Related" to "Exact"
* Copied GO:0010083 to GO:0010448 with type part_of
* Added synonym "valine/tyrosine/tryptophan permease activity" to GO:0015173
* Changed synonym scope of GO:0015210 from "Narrow" to "Related"
* Changed synonym scope of GO:0015462 from "Related" to "Narrow"
* Added synonym "leucine/valine/isoleucine permease activity" to GO:0015658
* Added synonym "valine/tyrosine/tryptophan permease activity" to GO:0015658
* Deleted synonym "monoterpene biosynthesis" from GO:0016099
* Deleted synonym "monoterpene biosynthetic process" from GO:0016099
* Deleted synonym "X-Pro dipeptidyl-peptidase activity" from GO:0017088
* Deleted synonym "leucine/valine/isoleucine permease activity" from GO:0022857
* Deleted synonym "transporter activity" from GO:0022857
* Deleted synonym "valine/tyrosine/tryptophan permease activity" from GO:0022857
* Deleted synonym "elevation of endoplasmic reticulum calcium ion concentration" from GO:0032470
* Added synonym "elevation of ER calcium ion concentration" to GO:0032470
* Changed synonym scope of GO:0032470 from "Related" to "Exact"
* Deleted synonym "ATP-dependent polydeoxyribonucleotide kinase activity" from GO:0046404
* Changed name of GO:0046596 from "regulation of virion penetration into host" to "regulation of virion penetration into host cell"
* Added definition dbxref GOC:tb to GO:0046596
* Changed name of GO:0046597 from "negative regulation of virion penetration into host" to "negative regulation of virion penetration into host cell"
* Added definition dbxref GOC:tb to GO:0046597
* Changed name of GO:0046598 from "positive regulation of virion penetration into host" to "positive regulation of virion penetration into host cell"
* Added definition dbxref GOC:tb to GO:0046598
* Changed name of GO:0046620 from "regulation of organ size" to "regulation of organ growth"
* Added definition dbxref GOC:tb to GO:0046620
* Deleted synonym "regulation of organ growth" from GO:0046620
* Added synonym "regulation of organ size" to GO:0046620
* Added general dbxref GOC:tb to synonym regulation of organ size of GO:0046620
* Changed synonym scope of GO:0046620 from "Related" to "Exact"
* Changed name of GO:0046621 from "negative regulation of organ size" to "negative regulation of organ growth"
* Added definition dbxref GOC:tb to GO:0046621
* Added synonym "negative regulation of organ size" to GO:0046621
* Added general dbxref GOC:tb to synonym negative regulation of organ size of GO:0046621
* Changed synonym scope of GO:0046621 from "Related" to "Exact"
* Changed name of GO:0046622 from "positive regulation of organ size" to "positive regulation of organ growth"
* Added definition dbxref GOC:tb to GO:0046622
* Added synonym "positive regulation of organ size" to GO:0046622
* Added general dbxref GOC:tb to synonym positive regulation of organ size of GO:0046622
* Changed synonym scope of GO:0046622 from "Related" to "Exact"
* Changed name of GO:0048524 from "positive regulation of viral life cycle" to "positive regulation of viral reproduction"
* Added definition dbxref GOC:tb to GO:0048524
* Added synonym "positive regulation of viral life cycle" to GO:0048524
* Added general dbxref GOC:tb to synonym positive regulation of viral life cycle of GO:0048524
* Changed synonym scope of GO:0048524 from "Related" to "Exact"
* Changed name of GO:0048525 from "negative regulation of viral life cycle" to "negative regulation of viral reproduction"
* Added definition dbxref GOC:tb to GO:0048525
* Added synonym "negative regulation of viral life cycle" to GO:0048525
* Added general dbxref GOC:tb to synonym negative regulation of viral life cycle of GO:0048525
* Changed synonym scope of GO:0048525 from "Related" to "Exact"
* Changed name of GO:0048832 from "regulation of organ number" to "specification of organ number"
* Changed name of GO:0048833 from "regulation of floral organ number" to "specification of floral organ number"
* Changed definition of GO:0048833 from "Any process that modulates the number of petals formed in a flower." to "Any process that modulates the number of floral organs formed in a floral whorl."
* Changed name of GO:0048834 from "regulation of petal number" to "specification of petal number"
* Deleted synonym "ribose 1-dehydrogenase (NADP+) activity" from GO:0050259
* Changed name of GO:0050792 from "regulation of viral life cycle" to "regulation of viral reproduction"
* Added definition dbxref GOC:tb to GO:0050792
* Added synonym "regulation of viral life cycle" to GO:0050792
* Added general dbxref GOC:tb to synonym regulation of viral life cycle of GO:0050792
* Changed synonym scope of GO:0050792 from "Related" to "Exact"
* Deleted synonym "positive regulation of NK T cell proliferation" from GO:0051142
* Changed name of GO:0051436 from "negative regulation of ubiquitin ligase activity during mitotic cell cycle" to "negative regulation of ubiquitin-protein ligase activity during mitotic cell cycle"
* Added definition dbxref GOC:tb to GO:0051436
* Added synonym "negative regulation of ubiquitin ligase activity during mitotic cell cycle" to GO:0051436
* Added general dbxref GOC:tb to synonym negative regulation of ubiquitin ligase activity during mitotic cell cycle of GO:0051436
* Changed synonym scope of GO:0051436 from "Related" to "Exact"
* Changed name of GO:0051437 from "positive regulation of ubiquitin ligase activity during mitotic cell cycle" to "positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle"
* Added definition dbxref GOC:tb to GO:0051437
* Added synonym "positive regulation of ubiquitin ligase activity during mitotic cell cycle" to GO:0051437
* Added general dbxref GOC:tb to synonym positive regulation of ubiquitin ligase activity during mitotic cell cycle of GO:0051437
* Changed synonym scope of GO:0051437 from "Related" to "Exact"
* Changed name of GO:0051438 from "regulation of ubiquitin ligase activity" to "regulation of ubiquitin-protein ligase activity"
* Added definition dbxref GOC:tb to GO:0051438
* Added synonym "regulation of ubiquitin ligase activity" to GO:0051438
* Added general dbxref GOC:tb to synonym regulation of ubiquitin ligase activity of GO:0051438
* Changed synonym scope of GO:0051438 from "Related" to "Exact"
* Changed name of GO:0051439 from "regulation of ubiquitin ligase activity during mitotic cell cycle" to "regulation of ubiquitin-protein ligase activity during mitotic cell cycle"
* Deleted synonym "regulation of ubiquitin-protein ligase activity during mitotic cell cycle" from GO:0051439
* Added synonym "regulation of ubiquitin ligase activity during mitotic cell cycle" to GO:0051439
* Added general dbxref GOC:tb to synonym regulation of ubiquitin ligase activity during mitotic cell cycle of GO:0051439
* Changed synonym scope of GO:0051439 from "Related" to "Exact"
* Changed name of GO:0051440 from "regulation of ubiquitin ligase activity during meiotic cell cycle" to "regulation of ubiquitin-protein ligase activity during meiotic cell cycle"
* Added definition dbxref GOC:tb to GO:0051440
* Deleted synonym "regulation of ubiquitin-protein ligase activity during meiotic cell cycle" from GO:0051440
* Added synonym "regulation of ubiquitin ligase activity during meiotic cell cycle" to GO:0051440
* Added general dbxref GOC:tb to synonym regulation of ubiquitin ligase activity during meiotic cell cycle of GO:0051440
* Changed synonym scope of GO:0051440 from "Related" to "Exact"
* Changed name of GO:0051441 from "positive regulation of ubiquitin ligase activity during meiotic cell cycle" to "positive regulation of ubiquitin-protein ligase activity during meiotic cell cycle"
* Added definition dbxref GOC:tb to GO:0051441
* Added synonym "positive regulation of ubiquitin ligase activity during meiotic cell cycle" to GO:0051441
* Added general dbxref GOC:tb to synonym positive regulation of ubiquitin ligase activity during meiotic cell cycle of GO:0051441
* Changed synonym scope of GO:0051441 from "Related" to "Exact"
* Changed name of GO:0051442 from "negative regulation of ubiquitin ligase activity during meiotic cell cycle" to "negative regulation of ubiquitin-protein ligase activity during meiotic cell cycle"
* Added definition dbxref GOC:tb to GO:0051442
* Added synonym "negative regulation of ubiquitin ligase activity during meiotic cell cycle" to GO:0051442
* Added general dbxref GOC:tb to synonym negative regulation of ubiquitin ligase activity during meiotic cell cycle of GO:0051442
* Changed synonym scope of GO:0051442 from "Related" to "Exact"
* Changed name of GO:0051443 from "positive regulation of ubiquitin ligase activity" to "positive regulation of ubiquitin-protein ligase activity"
* Added definition dbxref GOC:tb to GO:0051443
* Added synonym "positive regulation of ubiquitin ligase activity" to GO:0051443
* Added general dbxref GOC:tb to synonym positive regulation of ubiquitin ligase activity of GO:0051443
* Changed synonym scope of GO:0051443 from "Related" to "Exact"
* Changed name of GO:0051444 from "negative regulation of ubiquitin ligase activity" to "negative regulation of ubiquitin-protein ligase activity"
* Added definition dbxref GOC:tb to GO:0051444
* Added synonym "negative regulation of ubiquitin ligase activity" to GO:0051444
* Added general dbxref GOC:tb to synonym negative regulation of ubiquitin ligase activity of GO:0051444
* Changed synonym scope of GO:0051444 from "Related" to "Exact"
* Deleted synonym "ATP-dependent polynucleotide kinase activity" from GO:0051734
* Deleted synonym "ATP-dependent polynucleotide kinase activity" from GO:0051736


From gocvs at genome.Stanford.EDU  Thu Oct 11 21:30:40 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Thu, 11 Oct 2007 21:30:40 -0700 (PDT)
Subject: [go-diff] GO update 10/11/2007
Message-ID: <200710120430.VAA27020@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.500 by 5.505

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0033619
* Created object of type obo:TERM with id GO:0033620
* Created object of type obo:TERM with id GO:0033621
* Created object of type obo:TERM with id GO:0060170
* Created object of type obo:TERM with id GO:0060171
* Created object of type obo:TERM with id GO:0060172
* Populated new object GO:0033619 (macro)
  * Changed name of GO:0033619 from "<new term>" to "membrane protein proteolysis"
  * Set definition of GO:0033619 to "The proteolytic cleavage of a transmembrane protein leading to the release of its intracellular or ecto-domains."
  * Added definition dbxref GOC:pd to GO:0033619
  * Copied GO:0033619 to GO:0006508 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033619
* Populated new object GO:0033620 (macro)
  * Changed name of GO:0033620 from "<new term>" to "Mei2 nuclear dot"
  * Set definition of GO:0033620 to "A nuclear body that forms during meiotic prophase in a fixed position in the horsetail nucleus; contains Mei2 and meiRNA. May play a role in the progression of meiosis I."
  * Added definition dbxref PMID:12808043 to GO:0033620
  * Added synonym "Mei2 dot" to GO:0033620
  * Changed synonym scope of GO:0033620 from "Related" to "Exact"
  * Copied GO:0033620 to GO:0016604 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033620
* Populated new object GO:0033621 (macro)
  * Changed name of GO:0033621 from "<new term>" to "mRNA catabolic process, meiosis-specific transcripts"
  * Added comment "Note that it is speculated that higher eukaryotic YTH-family protein may be involved in similar mechanisms to supress gene regulation during gametogenesis or general silencing."
  * Set definition of GO:0033621 to "The selective degradation of meiosis-specific transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein."
  * Added definition dbxref PMID:16823445 to GO:0033621
  * Added GO:0033621 to category gosubset_prok
  * Added synonym "degradation of meiosis-specific transcripts" to GO:0033621
  * Changed synonym scope of GO:0033621 from "Related" to "Exact"
  * Added synonym "mRNA breakdown, meiosis-specific transcripts" to GO:0033621
  * Changed synonym scope of GO:0033621 from "Related" to "Exact"
  * Added synonym "mRNA catabolism, meiosis-specific transcripts" to GO:0033621
  * Changed synonym scope of GO:0033621 from "Related" to "Exact"
  * Added synonym "mRNA degradation, meiosis-specific transcripts" to GO:0033621
  * Changed synonym scope of GO:0033621 from "Related" to "Exact"
  * Copied GO:0033621 to GO:0006402 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033621
* Populated new object GO:0060170 (macro)
  * Changed name of GO:0060170 from "<new term>" to "cilium membrane"
  * Set definition of GO:0060170 to "The portion of the plasma membrane surrounding a cilium."
  * Added definition dbxref GOC:dph to GO:0060170
  * Added definition dbxref GOC:rh to GO:0060170
  * Copied GO:0060170 to GO:0044441 with type OBO_REL:is_a
  * Copied GO:0060170 to GO:0031253 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0060170
* Populated new object GO:0060171 (macro)
  * Changed name of GO:0060171 from "<new term>" to "stereocilium membrane"
  * Set definition of GO:0060171 to "The portion of the plasma membrane surrounding a stereocilium."
  * Added definition dbxref GOC:dph to GO:0060171
  * Added definition dbxref GOC:rh to GO:0060171
  * Copied GO:0060171 to GO:0031528 with type OBO_REL:is_a
  * Copied GO:0060171 to GO:0032420 with type part_of
  * Assigned namespace "cellular_component" to GO:0060171
* Populated new object GO:0060172 (macro)
  * Changed name of GO:0060172 from "<new term>" to "astral microtubule depolymerization"
  * Set definition of GO:0060172 to "The removal of tubulin heterodimers from one or both ends of an astral microtubule. An astral microtubule is any of the spindle microtubules that radiate in all directions from the spindle poles and are thought to contribute to the forces that separate the poles and position them in relation to the rest of the cell."
  * Added definition dbxref GOC:dph to GO:0060172
  * Copied GO:0060172 to GO:0030953 with type OBO_REL:is_a
  * Copied GO:0060172 to GO:0007019 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060172
* Deleted synonym "immunoglobulin receptor activity" from GO:0001792
* Deleted synonym "type II hypersensitivity" from GO:0001794
* Deleted synonym "type II hypersensitivity" from GO:0001795
* Deleted synonym "NK T cell proliferation" from GO:0001866
* Deleted synonym "T-helper 1 cell lineage commitment" from GO:0002296
* Added synonym "Th1 cell lineage commitment" to GO:0002296
* Added general dbxref Fundamental Immunology (ISBN:0781735149) to synonym Th1 cell lineage commitment of GO:0002296
* Changed synonym scope of GO:0002296 from "Related" to "Exact"
* Deleted synonym "ubiquitin thiolesterase activity" from GO:0004221
* Deleted synonym "phosphoenolpyruvate carboxykinase activity" from GO:0004611
* Deleted synonym "GPI-anchored membrane-bound receptor" from GO:0004872
* Deleted synonym "peroxisomal membrane transporter" from GO:0005215
* Deleted synonym "glycine receptor-associated protein" from GO:0005515
* Deleted synonym "lysosomal cysteine-type endopeptidase" from GO:0005764
* Deleted synonym "lysosomal protein stabilization" from GO:0005764
* Deleted synonym "endosomal oligosaccharide transporter" from GO:0005768
* Deleted synonym "peroxisomal fatty acyl transporter" from GO:0005777
* Deleted synonym "peroxisomal membrane transporter" from GO:0005777
* Deleted synonym "peroxisome receptor" from GO:0005777
* Deleted synonym "proteoglycan integral to plasma membrane" from GO:0005887
* Deleted GO:0005929 --OBO_REL:is_a--> GO:0043231
* Deleted synonym "loss of asymmetric budding" from GO:0006033
* Deleted GO:0006509 --OBO_REL:is_a--> GO:0006508
* Copied GO:0006509 to GO:0033619 with type OBO_REL:is_a
* Deleted synonym "regulation of cytoskeleton" from GO:0007010
* Changed name of GO:0007027 from "negative regulation of axonemal microtubule depolymerization" to "negative regulation of microtubule depolymerization in axoneme"
* Added definition dbxref GOC:dph to GO:0007027
* Added synonym "negative regulation of axonemal microtubule depolymerization" to GO:0007027
* Added general dbxref GOC:dph to synonym negative regulation of axonemal microtubule depolymerization of GO:0007027
* Deleted synonym "endoplasmic reticulum organization and biogenesis" from GO:0007029
* Added synonym "endoplasmic reticulum organisation and biogenesis" to GO:0007029
* Changed synonym scope of GO:0007029 from "Related" to "Exact"
* Changed name of GO:0007433 from "larval salivary gland determination" to "larval salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0007433
* Added synonym "larval salivary gland determination" to GO:0007433
* Added general dbxref GOC:tb to synonym larval salivary gland determination of GO:0007433
* Changed synonym scope of GO:0007433 from "Related" to "Exact"
* Changed name of GO:0007434 from "adult salivary gland determination" to "adult salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0007434
* Added synonym "larval salivary gland determination" to GO:0007434
* Added general dbxref GOC:tb to synonym larval salivary gland determination of GO:0007434
* Changed synonym scope of GO:0007434 from "Related" to "Exact"
* Deleted synonym "outer membrane exporter porin" from GO:0009279
* Deleted synonym "trichome differentiation" from GO:0010026
* Added synonym "levan metabolic process" to GO:0010145
* Changed synonym scope of GO:0010145 from "Related" to "Exact"
* Added synonym "levan biosynthesis" to GO:0010146
* Changed synonym scope of GO:0010146 from "Related" to "Exact"
* Added synonym "levan biosynthetic process" to GO:0010146
* Changed synonym scope of GO:0010146 from "Related" to "Exact"
* Added synonym "levan catabolic process" to GO:0010147
* Changed synonym scope of GO:0010147 from "Related" to "Exact"
* Added synonym "levan catabolism" to GO:0010147
* Changed synonym scope of GO:0010147 from "Related" to "Exact"
* Deleted synonym "channel activity" from GO:0015267
* Deleted synonym "Secondary carrier-type facilitators" from GO:0015291
* Added synonym "secondary carrier-type facilitators" to GO:0015291
* Changed synonym scope of GO:0015291 from "Related" to "Exact"
* Deleted synonym "sesquiterpene biosynthesis" from GO:0016106
* Deleted synonym "sesquiterpene biosynthetic process" from GO:0016106
* Deleted synonym "GPI-anchored membrane-bound receptor" from GO:0019898
* Deleted synonym "cyanosome" from GO:0030089
* Added definition dbxref GOC:dph to GO:0030832
* Deleted GO:0030832 --OBO_REL:is_a--> GO:0030036
* Copied GO:0030832 to GO:0032956 with type OBO_REL:is_a
* Copied GO:0030832 to GO:0032535 with type OBO_REL:is_a
* Deleted GO:0031293 --OBO_REL:is_a--> GO:0006508
* Copied GO:0031293 to GO:0033619 with type OBO_REL:is_a
* Changed name of GO:0031780 from "adrenocorticotropic hormone receptor binding" to "adrenocorticotropin hormone receptor binding"
* Changed definition of GO:0031780 from "Interacting selectively with an adrenocorticotropic hormone receptor." to "Interacting selectively with an adrenocorticotropin hormone receptor."
* Added definition dbxref GOC:dph to GO:0031780
* Deleted GO:0032098 --OBO_REL:is_a--> GO:0032095
* Copied GO:0032098 to GO:0031667 with type part_of
* Copied GO:0032098 to GO:0065008 with type OBO_REL:is_a
* Deleted GO:0032932 --OBO_REL:is_a--> GO:0030953
* Copied GO:0032932 to GO:0060172 with type part_of
* Deleted synonym "ent-kaurene metabolic process" from GO:0033331
* Deleted synonym "muscle motor activity" from GO:0043292
* Changed name of GO:0045704 from "regulation of salivary gland determination" to "regulation of salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045704
* Added synonym "regulation of salivary gland determination" to GO:0045704
* Added general dbxref GOC:tb to synonym regulation of salivary gland determination of GO:0045704
* Changed synonym scope of GO:0045704 from "Related" to "Exact"
* Changed name of GO:0045705 from "negative regulation of salivary gland determination" to "negative regulation of salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045705
* Added synonym "negative regulation of salivary gland determination" to GO:0045705
* Added general dbxref GOC:tb to synonym negative regulation of salivary gland determination of GO:0045705
* Changed synonym scope of GO:0045705 from "Related" to "Exact"
* Changed name of GO:0045706 from "positive regulation of salivary gland determination" to "positive regulation of salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045706
* Added synonym "positive regulation of salivary gland determination" to GO:0045706
* Added general dbxref GOC:tb to synonym positive regulation of salivary gland determination of GO:0045706
* Changed synonym scope of GO:0045706 from "Related" to "Exact"
* Changed name of GO:0045707 from "regulation of adult salivary gland determination" to "regulation of adult salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045707
* Added synonym "regulation of adult salivary gland determination" to GO:0045707
* Added general dbxref GOC:tb to synonym regulation of adult salivary gland determination of GO:0045707
* Changed synonym scope of GO:0045707 from "Related" to "Exact"
* Changed name of GO:0045708 from "regulation of larval salivary gland determination" to "regulation of larval salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045708
* Added synonym "regulation of larval salivary gland determination" to GO:0045708
* Added general dbxref GOC:tb to synonym regulation of larval salivary gland determination of GO:0045708
* Changed synonym scope of GO:0045708 from "Related" to "Exact"
* Changed name of GO:0045709 from "negative regulation of adult salivary gland determination" to "negative regulation of adult salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045709
* Added synonym "negative regulation of adult salivary gland determination" to GO:0045709
* Added general dbxref GOC:tb to synonym negative regulation of adult salivary gland determination of GO:0045709
* Changed synonym scope of GO:0045709 from "Related" to "Exact"
* Changed name of GO:0045710 from "negative regulation of larval salivary gland determination" to "negative regulation of larval salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045710
* Added synonym "negative regulation of larval salivary gland determination" to GO:0045710
* Added general dbxref GOC:tb to synonym negative regulation of larval salivary gland determination of GO:0045710
* Changed synonym scope of GO:0045710 from "Related" to "Exact"
* Changed name of GO:0045711 from "positive regulation of adult salivary gland determination" to "positive regulation of adult salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045711
* Added synonym "positive regulation of adult salivary gland determination" to GO:0045711
* Added general dbxref GOC:tb to synonym positive regulation of adult salivary gland determination of GO:0045711
* Changed synonym scope of GO:0045711 from "Related" to "Exact"
* Changed name of GO:0045712 from "positive regulation of larval salivary gland determination" to "positive regulation of larval salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045712
* Added synonym "positive regulation of larval salivary gland determination" to GO:0045712
* Added general dbxref GOC:tb to synonym positive regulation of larval salivary gland determination of GO:0045712
* Changed synonym scope of GO:0045712 from "Related" to "Exact"
* Deleted synonym "cyanidin-3-rhamnosylglucoside 5-O-glucosyltransferase activity" from GO:0047214
* Deleted synonym "thiohydroximate beta-D-glucosyltransferase activity" from GO:0047251
* Deleted synonym "(1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity" from GO:0047470
* Deleted synonym "fructose 5-dehydrogenase (NADP+) activity" from GO:0047903
* Deleted synonym "glycine N-choloyltransferase activity" from GO:0047963
* Changed name of GO:0048239 from "negative regulation of telomeric recombination at telomere" to "negative regulation of DNA recombination at telomere"
* Added synonym "negative regulation of telomeric recombination at telomere" to GO:0048239
* Added general dbxref GOC:tb to synonym negative regulation of telomeric recombination at telomere of GO:0048239
* Changed synonym scope of GO:0048239 from "Related" to "Exact"
* Changed name of GO:0048835 from "negative regulation of petal number" to "specification of decreased petal number"
* Deleted synonym "down regulation of petal number" from GO:0048835
* Deleted synonym "down-regulation of petal number" from GO:0048835
* Deleted synonym "downregulation of petal number" from GO:0048835
* Deleted synonym "inhibition of petal number" from GO:0048835
* Changed name of GO:0048836 from "positive regulation of petal number" to "specification of increased petal number"
* Deleted synonym "activation of petal number" from GO:0048836
* Deleted synonym "stimulation of petal number" from GO:0048836
* Deleted synonym "up regulation of petal number" from GO:0048836
* Deleted synonym "up-regulation of petal number" from GO:0048836
* Deleted synonym "upregulation of petal number" from GO:0048836
* Changed name of GO:0050687 from "negative regulation of antiviral response" to "negative regulation of defense response to virus"
* Added synonym "negative regulation of antiviral response" to GO:0050687
* Added general dbxref GOC:dph to synonym negative regulation of antiviral response of GO:0050687
* Changed synonym scope of GO:0050687 from "Related" to "Exact"
* Changed name of GO:0050690 from "regulation of antiviral response by virus" to "regulation of defense response to virus by virus"
* Added definition dbxref GOC:dph to GO:0050690
* Added synonym "regulation of antiviral response by virus" to GO:0050690
* Added general dbxref GOC:dph to synonym regulation of antiviral response by virus of GO:0050690
* Changed synonym scope of GO:0050690 from "Related" to "Exact"
* Changed name of GO:0050691 from "regulation of antiviral response by host" to "regulation of defense response to virus by host"
* Added definition dbxref GOC:dph to GO:0050691
* Added synonym "regulation of antiviral response by host" to GO:0050691
* Added general dbxref GOC:dph to synonym regulation of antiviral response by host of GO:0050691
* Changed name of GO:0050885 from "regulation of balance" to "neuromuscular process controlling balance"
* Added definition dbxref GOC:dph to GO:0050885
* Added synonym "regulation of balance" to GO:0050885
* Deleted GO:0050885 --OBO_REL:is_a--> GO:0050881
* Copied GO:0050885 to GO:0050905 with type OBO_REL:is_a
* Deleted synonym "regulation of NK T cell activation" from GO:0051133
* Changed name of GO:0051459 from "regulation of adrenocorticotropic hormone secretion" to "regulation of adrenocorticotropin hormone secretion"
* Added definition dbxref GOC:dph to GO:0051459
* Added general dbxref XX:<new dbxref> to GO:0051459
* Added synonym "regulation of adrenocorticotropic hormone secreteion" to GO:0051459
* Added general dbxref GOC:dph to synonym regulation of adrenocorticotropic hormone secreteion of GO:0051459
* Changed synonym scope of GO:0051459 from "Related" to "Exact"
* Changed name of GO:0060057 from "apotosis involved in mammary gland involution" to "apoptosis involved in mammary gland involution"
* Changed name of GO:0060128 from "adrenocorticotropic hormone secreting cell differentiation" to "adrenocorticotropin hormone secreting cell differentiation"
* Added synonym "adrenocorticotropic hormone secreting cell differentiation" to GO:0060128
* Added general dbxref GOC:dph to synonym adrenocorticotropic hormone secreting cell differentiation of GO:0060128
* Changed synonym scope of GO:0060128 from "Related" to "Exact"
* Changed name of GO:0060131 from "adrenocorticotropic hormone secreting cell development" to "adrenocorticotropin hormone secreting cell development"
* Added synonym "adrenocorticotropic hormone secreting cell development" to GO:0060131
* Added general dbxref GOC:dph to synonym adrenocorticotropic hormone secreting cell development of GO:0060131
* Changed synonym scope of GO:0060131 from "Related" to "Exact"


From gocvs at genome.Stanford.EDU  Fri Oct 12 21:30:40 2007
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Fri, 12 Oct 2007 21:30:40 -0700 (PDT)
Subject: [go-diff] GO update 10/12/2007
Message-ID: <200710130430.VAA12729@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.505 by 5.508

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created category PIR GO slim (goslim_pir)
* Created object of type obo:TERM with id GO:0033622
* Created object of type obo:TERM with id GO:0033623
* Created object of type obo:TERM with id GO:0033624
* Created object of type obo:TERM with id GO:0033625
* Created object of type obo:TERM with id GO:0033626
* Created object of type obo:TERM with id GO:0033627
* Created object of type obo:TERM with id GO:0033628
* Created object of type obo:TERM with id GO:0033629
* Created object of type obo:TERM with id GO:0033630
* Created object of type obo:TERM with id GO:0033631
* Created object of type obo:TERM with id GO:0033632
* Created object of type obo:TERM with id GO:0033633
* Created object of type obo:TERM with id GO:0033634
* Created object of type obo:TERM with id GO:0060173
* Created object of type obo:TERM with id GO:0060174
* Populated new object GO:0033622 (macro)
  * Changed name of GO:0033622 from "<new term>" to "integrin activation"
  * Set definition of GO:0033622 to "The chemical reactions and pathways involving an integrin, a heterodimeric adhesion receptor formed by the non-covalent association of particular alpha and beta subunits, that lead to the increased affinity of the integrin for its extracellular ligands."
  * Added definition dbxref GOC:add to GO:0033622
  * Added definition dbxref PMID:12213832 to GO:0033622
  * Added definition dbxref PMID:14754902 to GO:0033622
  * Added synonym "integrin complex activation" to GO:0033622
  * Changed synonym scope of GO:0033622 from "Related" to "Exact"
  * Copied GO:0033622 to GO:0044267 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033622
* Populated new object GO:0033623 (macro)
  * Changed name of GO:0033623 from "<new term>" to "regulation of integrin activation"
  * Set definition of GO:0033623 to "Any process that modulates the frequency, rate, or extent of integrin activation."
  * Added definition dbxref GOC:add to GO:0033623
  * Added synonym "regulation of integrin complex activation" to GO:0033623
  * Changed synonym scope of GO:0033623 from "Related" to "Exact"
  * Copied GO:0033623 to GO:0033622 with type part_of
  * Copied GO:0033623 to GO:0032268 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033623
* Populated new object GO:0033624 (macro)
  * Changed name of GO:0033624 from "<new term>" to "negative regulation of integrin activation"
  * Set definition of GO:0033624 to "Any process that stops, prevents or reduces the frequency, rate, or extent of integrin activation."
  * Added definition dbxref GOC:add to GO:0033624
  * Added synonym "negative regulation of integrin complex activation" to GO:0033624
  * Changed synonym scope of GO:0033624 from "Related" to "Exact"
  * Copied GO:0033624 to GO:0033623 with type OBO_REL:is_a
  * Copied GO:0033624 to GO:0032269 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033624
* Populated new object GO:0033625 (macro)
  * Changed name of GO:0033625 from "<new term>" to "positive regulation of integrin activation"
  * Set definition of GO:0033625 to "Any process that activates or increases the frequency, rate, or extent of integrin activation."
  * Added definition dbxref GOC:add to GO:0033625
  * Added synonym "positive regulation of integrin complex activation" to GO:0033625
  * Changed synonym scope of GO:0033625 from "Related" to "Exact"
  * Copied GO:0033625 to GO:0032270 with type OBO_REL:is_a
  * Copied GO:0033625 to GO:0033623 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033625
* Populated new object GO:0033626 (macro)
  * Changed name of GO:0033626 from "<new term>" to "cell surface receptor linked signal transduction leading to integrin activation"
  * Set definition of GO:0033626 to "Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell that lead to the increased affinity of an integrin, a heterodimeric adhesion receptor formed by the non-covalent association of particular alpha and beta subunits, for its extracellular ligands."
  * Added definition dbxref GOC:add to GO:0033626
  * Added definition dbxref PMID:12213832 to GO:0033626
  * Added definition dbxref PMID:14754902 to GO:0033626
  * Added synonym "cell surface receptor linked signal transduction leading to integrin complex activation" to GO:0033626
  * Changed synonym scope of GO:0033626 from "Related" to "Exact"
  * Copied GO:0033626 to GO:0007166 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033626
* Populated new object GO:0033627 (macro)
  * Changed name of GO:0033627 from "<new term>" to "cell adhesion mediated by integrin"
  * Set definition of GO:0033627 to "The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via an integrin, a heterodimeric adhesion receptor formed by the non-covalent association of particular alpha and beta subunits."
  * Added definition dbxref GOC:add to GO:0033627
  * Added definition dbxref PMID:12213832 to GO:0033627
  * Added definition dbxref PMID:14754902 to GO:0033627
  * Added synonym "cell adhesion mediated by integrin complex" to GO:0033627
  * Changed synonym scope of GO:0033627 from "Related" to "Exact"
  * Copied GO:0033627 to GO:0007155 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033627
* Populated new object GO:0033628 (macro)
  * Changed name of GO:0033628 from "<new term>" to "regulation of cell adhesion mediated by integrin"
  * Set definition of GO:0033628 to "Any process that modulates the frequency, rate, or extent of cell adhesion mediated by integrin."
  * Added definition dbxref GOC:add to GO:0033628
  * Added synonym "regulation of cell adhesion mediated by integrin complex" to GO:0033628
  * Changed synonym scope of GO:0033628 from "Related" to "Exact"
  * Copied GO:0033628 to GO:0033627 with type part_of
  * Copied GO:0033628 to GO:0022407 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033628
* Populated new object GO:0033629 (macro)
  * Changed name of GO:0033629 from "<new term>" to "negative regulation of cell adhesion mediated by integrin"
  * Set definition of GO:0033629 to "Any process that stops, prevents or reduces the frequency, rate, or extent of cell adhesion mediated by integrin."
  * Added definition dbxref GOC:add to GO:0033629
  * Added synonym "negative regulation of cell adhesion mediated by integrin complex" to GO:0033629
  * Changed synonym scope of GO:0033629 from "Related" to "Exact"
  * Copied GO:0033629 to GO:0022408 with type OBO_REL:is_a
  * Copied GO:0033629 to GO:0033628 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033629
* Populated new object GO:0033630 (macro)
  * Changed name of GO:0033630 from "<new term>" to "positive regulation of cell adhesion mediated by integrin"
  * Set definition of GO:0033630 to "Any process that activates or increases the frequency, rate, or extent of cell adhesion mediated by integrin."
  * Added definition dbxref GOC:add to GO:0033630
  * Added synonym "positive regulation of cell adhesion mediated by integrin complex" to GO:0033630
  * Changed synonym scope of GO:0033630 from "Related" to "Exact"
  * Copied GO:0033630 to GO:0033628 with type OBO_REL:is_a
  * Copied GO:0033630 to GO:0022409 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033630
* Populated new object GO:0033631 (macro)
  * Changed name of GO:0033631 from "<new term>" to "cell-cell adhesion mediated by integrin"
  * Set definition of GO:0033631 to "The attachment of one cell to another cell via an integrin, a heterodimeric adhesion receptor formed by the non-covalent association of particular alpha and beta subunits."
  * Added definition dbxref GOC:add to GO:0033631
  * Added definition dbxref PMID:12213832 to GO:0033631
  * Added definition dbxref PMID:14754902 to GO:0033631
  * Added synonym "cell-cell adhesion mediated by integrin complex " to GO:0033631
  * Changed synonym scope of GO:0033631 from "Related" to "Exact"
  * Copied GO:0033631 to GO:0033627 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033631
* Populated new object GO:0033632 (macro)
  * Changed name of GO:0033632 from "<new term>" to "regulation of cell-cell adhesion mediated by integrin"
  * Set definition of GO:0033632 to "Any process that modulates the frequency, rate, or extent of cell-cell adhesion mediated by integrin."
  * Added definition dbxref GOC:add to GO:0033632
  * Added synonym "regulation of cell-cell adhesion mediated by integrin complex" to GO:0033632
  * Changed synonym scope of GO:0033632 from "Related" to "Exact"
  * Copied GO:0033632 to GO:0022407 with type OBO_REL:is_a
  * Copied GO:0033632 to GO:0033631 with type part_of
  * Assigned namespace "biological_process" to GO:0033632
* Populated new object GO:0033633 (macro)
  * Changed name of GO:0033633 from "<new term>" to "negative regulation of cell-cell adhesion mediated by integrin"
  * Set definition of GO:0033633 to "Any process that stops, prevents or reduces the frequency, rate, or extent of cell-cell adhesion mediated by integrin."
  * Added definition dbxref GOC:add to GO:0033633
  * Added synonym "negative regulation of cell-cell adhesion mediated by integrin complex" to GO:0033633
  * Changed synonym scope of GO:0033633 from "Related" to "Exact"
  * Copied GO:0033633 to GO:0022408 with type OBO_REL:is_a
  * Copied GO:0033633 to GO:0033632 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033633
* Populated new object GO:0033634 (macro)
  * Changed name of GO:0033634 from "<new term>" to "positive regulation of cell-cell adhesion mediated by integrin"
  * Set definition of GO:0033634 to "Any process that activates or increases the frequency, rate, or extent of cell-cell adhesion mediated by integrin."
  * Added definition dbxref GOC:add to GO:0033634
  * Added synonym "positive regulation of cell-cell adhesion mediated by integrin complex" to GO:0033634
  * Changed synonym scope of GO:0033634 from "Related" to "Exact"
  * Copied GO:0033634 to GO:0033632 with type OBO_REL:is_a
  * Copied GO:0033634 to GO:0022409 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033634
* Populated new object GO:0060173 (macro)
  * Changed name of GO:0060173 from "<new term>" to "limb development"
  * Set definition of GO:0060173 to "The process whose specific outcome is the progression of a limb over time, from its formation to the mature structure. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin."
  * Added definition dbxref GOC:dgh to GO:0060173
  * Added definition dbxref GOC:dph to GO:0060173
  * Added definition dbxref PMID:11487378 to GO:0060173
  * Copied GO:0060173 to GO:0048736 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060173
* Populated new object GO:0060174 (macro)
  * Changed name of GO:0060174 from "<new term>" to "limb bud formation"
  * Set definition of GO:0060174 to "The process pertaining to the initial formation of a limb bud from unspecified parts. This process begins with the formation of a local condensation of mesenchyme cells within the prospective limb field ends when a limb bud is recognizable."
  * Added definition dbxref GOC:dgh to GO:0060174
  * Added definition dbxref GOC:dph to GO:0060174
  * Added synonym "limb formation" to GO:0060174
  * Changed synonym scope of GO:0060174 from "Related" to "Exact"
  * Added synonym "limbbud formation" to GO:0060174
  * Changed synonym scope of GO:0060174 from "Related" to "Exact"
  * Copied GO:0060174 to GO:0048646 with type OBO_REL:is_a
  * Copied GO:0060174 to GO:0060173 with type part_of
  * Assigned namespace "biological_process" to GO:0060174
* Added GO:0000003 to category goslim_pir
* Added GO:0000109 to category goslim_pir
* Added GO:0000128 to category goslim_pir
* Added GO:0000133 to category goslim_pir
* Added GO:0000151 to category goslim_pir
* Added GO:0000166 to category goslim_pir
* Added GO:0000178 to category goslim_pir
* Deleted synonym "MATa1 (A1) pre-mRNA splicing" from GO:0000244
* Added GO:0000267 to category goslim_pir
* Added GO:0000280 to category goslim_pir
* Added GO:0000307 to category goslim_pir
* Added GO:0000346 to category goslim_pir
* Added GO:0000347 to category goslim_pir
* Added GO:0000385 to category goslim_pir
* Added GO:0000441 to category goslim_pir
* Added GO:0000502 to category goslim_pir
* Added GO:0000746 to category goslim_pir
* Added GO:0000776 to category goslim_pir
* Added GO:0000782 to category goslim_pir
* Added GO:0000786 to category goslim_pir
* Added GO:0000796 to category goslim_pir
* Added GO:0000808 to category goslim_pir
* Added GO:0000930 to category goslim_pir
* Added GO:0001534 to category goslim_pir
* Added GO:0001775 to category goslim_pir
* Added GO:0001816 to category goslim_pir
* Added GO:0001871 to category goslim_pir
* Added GO:0001882 to category goslim_pir
* Added GO:0001906 to category goslim_pir
* Added GO:0001917 to category goslim_pir
* Added GO:0002054 to category goslim_pir
* Added GO:0002376 to category goslim_pir
* Added GO:0003674 to category goslim_pir
* Added GO:0003676 to category goslim_pir
* Added GO:0003682 to category goslim_pir
* Added GO:0003774 to category goslim_pir
* Added GO:0003823 to category goslim_pir
* Added GO:0003824 to category goslim_pir
* Added GO:0003969 to category goslim_pir
* Added GO:0004133 to category goslim_pir
* Added GO:0004386 to category goslim_pir
* Deleted synonym "methylenetetrahydrofolate reductase (NADPH) activity" from GO:0004489
* Added GO:0004497 to category goslim_pir
* Deleted synonym "procollagen-proline 4-dioxygenase activity" from GO:0004656
* Deleted synonym "protein tyrosine phosphatase activity" from GO:0004725
* Added GO:0004803 to category goslim_pir
* Added GO:0004871 to category goslim_pir
* Deleted synonym "endoplasmic reticulum receptor activity" from GO:0004872
* Deleted synonym "immunophilin" from GO:0004872
* Deleted synonym "peroxisome integral membrane receptor" from GO:0004872
* Deleted synonym "peroxisome receptor" from GO:0004872
* Deleted synonym "cell adhesion receptor inhibitor activity" from GO:0005102
* Deleted synonym "cell adhesion receptor regulator activity" from GO:0005102
* Deleted synonym "transmembrane receptor protein serine/threonine kinase related_receptor-associated protein activity" from GO:0005102
* Added GO:0005198 to category goslim_pir
* Added GO:0005215 to category goslim_pir
* Added GO:0005488 to category goslim_pir
* Added GO:0005496 to category goslim_pir
* Added GO:0005515 to category goslim_pir
* Deleted synonym "nicotinic acetylcholine receptor-associated protein activity" from GO:0005515
* Added GO:0005549 to category goslim_pir
* Added GO:0005575 to category goslim_pir
* Changed comment from "Note that this term is intended to annotate gene products that are not uniformly attached to the cell surface." to "Note that this term is intended to annotate gene products that are not uniformly attached to the cell surface. For gene products from multicellular organisms which are secreted from a cell but retained within the organism (i.e. released into the interstitial fluid or blood), consider the cellular component term 'extracellular space ; GO:0005615'."
* Added GO:0005576 to category goslim_pir
* Added comment "Note that for multicellular organisms, the extracellular space refers to everything outside a cell, but still within the organism (excluding the extracellular matrix). Gene products from a multi-cellular organism are secreted from a cell into the interstitial fluid or blood can therefore be annotated to this term."
* Added GO:0005618 to category goslim_pir
* Added GO:0005622 to category goslim_pir
* Added GO:0005634 to category goslim_pir
* Added GO:0005643 to category goslim_pir
* Added GO:0005663 to category goslim_pir
* Deleted synonym "DNA-directed RNA polymerase II activity" from GO:0005665
* Added GO:0005667 to category goslim_pir
* Added GO:0005681 to category goslim_pir
* Added GO:0005694 to category goslim_pir
* Added GO:0005697 to category goslim_pir
* Added GO:0005730 to category goslim_pir
* Added GO:0005732 to category goslim_pir
* Added GO:0005739 to category goslim_pir
* Added GO:0005744 to category goslim_pir
* Added GO:0005768 to category goslim_pir
* Added GO:0005773 to category goslim_pir
* Added GO:0005783 to category goslim_pir
* Added GO:0005784 to category goslim_pir
* Added GO:0005794 to category goslim_pir
* Added GO:0005813 to category goslim_pir
* Added GO:0005835 to category goslim_pir
* Added GO:0005840 to category goslim_pir
* Added GO:0005844 to category goslim_pir
* Added GO:0005849 to category goslim_pir
* Added GO:0005856 to category goslim_pir
* Deleted synonym "plasma membrane long-chain fatty acid transporter" from GO:0005886
* Added GO:0005891 to category goslim_pir
* Added GO:0005902 to category goslim_pir
* Added GO:0005903 to category goslim_pir
* Added GO:0005929 to category goslim_pir
* Added GO:0005933 to category goslim_pir
* Added GO:0005937 to category goslim_pir
* Added GO:0005941 to category goslim_pir
* Added GO:0005942 to category goslim_pir
* Added GO:0005960 to category goslim_pir
* Added GO:0005975 to category goslim_pir
* Added GO:0005976 to category goslim_pir
* Added GO:0006066 to category goslim_pir
* Added GO:0006081 to category goslim_pir
* Added GO:0006082 to category goslim_pir
* Added GO:0006091 to category goslim_pir
* Added GO:0006112 to category goslim_pir
* Added GO:0006113 to category goslim_pir
* Added GO:0006118 to category goslim_pir
* Added GO:0006119 to category goslim_pir
* Added GO:0006139 to category goslim_pir
* Added GO:0006259 to category goslim_pir
* Added GO:0006260 to category goslim_pir
* Added GO:0006266 to category goslim_pir
* Added GO:0006276 to category goslim_pir
* Added GO:0006281 to category goslim_pir
* Added GO:0006304 to category goslim_pir
* Added GO:0006323 to category goslim_pir
* Added GO:0006350 to category goslim_pir
* Deleted synonym "RNA biosynthesis" from GO:0006351
* Deleted synonym "RNA biosynthetic process" from GO:0006351
* Deleted synonym "RNA synthesis" from GO:0006351
* Added GO:0006354 to category goslim_pir
* Added GO:0006396 to category goslim_pir
* Added GO:0006412 to category goslim_pir
* Added GO:0006457 to category goslim_pir
* Deleted synonym "tubulin-specific chaperone activity" from GO:0006461
* Added GO:0006464 to category goslim_pir
* Added GO:0006508 to category goslim_pir
* Added GO:0006518 to category goslim_pir
* Added GO:0006519 to category goslim_pir
* Added GO:0006629 to category goslim_pir
* Added GO:0006662 to category goslim_pir
* Added GO:0006725 to category goslim_pir
* Added GO:0006730 to category goslim_pir
* Added GO:0006766 to category goslim_pir
* Added GO:0006793 to category goslim_pir
* Added GO:0006800 to category goslim_pir
* Added GO:0006805 to category goslim_pir
* Added GO:0006807 to category goslim_pir
* Added GO:0006810 to category goslim_pir
* Added GO:0006811 to category goslim_pir
* Added GO:0006818 to category goslim_pir
* Added GO:0006836 to category goslim_pir
* Added GO:0006865 to category goslim_pir
* Added GO:0006869 to category goslim_pir
* Added GO:0006914 to category goslim_pir
* Added GO:0006928 to category goslim_pir
* Added GO:0006936 to category goslim_pir
* Added GO:0006949 to category goslim_pir
* Added GO:0006996 to category goslim_pir
* Added GO:0006997 to category goslim_pir
* Added GO:0007005 to category goslim_pir
* Added GO:0007028 to category goslim_pir
* Added GO:0007029 to category goslim_pir
* Added GO:0007030 to category goslim_pir
* Added GO:0007031 to category goslim_pir
* Added GO:0007032 to category goslim_pir
* Added GO:0007033 to category goslim_pir
* Added GO:0007047 to category goslim_pir
* Added GO:0007049 to category goslim_pir
* Added GO:0007059 to category goslim_pir
* Added GO:0007154 to category goslim_pir
* Added GO:0007155 to category goslim_pir
* Deleted synonym "serotonin receptor, adenylate cyclase inhibiting pathway" from GO:0007198
* Added synonym "serotonin receptor, adenylyl cyclase inhibiting pathway" to GO:0007198
* Changed synonym scope of GO:0007198 from "Related" to "Exact"
* Added GO:0007586 to category goslim_pir
* Added GO:0007588 to category goslim_pir
* Added GO:0008015 to category goslim_pir
* Added GO:0008023 to category goslim_pir
* Added GO:0008037 to category goslim_pir
* Added GO:0008144 to category goslim_pir
* Added GO:0008150 to category goslim_pir
* Added GO:0008152 to category goslim_pir
* Deleted synonym "fat body metabolic process (sensu Insecta)" from GO:0008152
* Deleted synonym "fat body metabolism (sensu Insecta)" from GO:0008152
* Added GO:0008233 to category goslim_pir
* Added GO:0008278 to category goslim_pir
* Added GO:0008283 to category goslim_pir
* Added GO:0008287 to category goslim_pir
* Added GO:0008289 to category goslim_pir
* Added GO:0008290 to category goslim_pir
* Added GO:0008367 to category goslim_pir
* Deleted synonym "vitamin B6 biosynthesis" from GO:0008615
* Deleted synonym "vitamin B6 biosynthetic process" from GO:0008615
* Added GO:0008639 to category goslim_pir
* Added GO:0008641 to category goslim_pir
* Added GO:0008643 to category goslim_pir
* Added GO:0008655 to category goslim_pir
* Added GO:0008907 to category goslim_pir
* Added GO:0009009 to category goslim_pir
* Added GO:0009055 to category goslim_pir
* Added GO:0009116 to category goslim_pir
* Added GO:0009117 to category goslim_pir
* Added GO:0009225 to category goslim_pir
* Added GO:0009289 to category goslim_pir
* Added GO:0009292 to category goslim_pir
* Added GO:0009308 to category goslim_pir
* Added GO:0009317 to category goslim_pir
* Added GO:0009368 to category goslim_pir
* Added GO:0009372 to category goslim_pir
* Added GO:0009404 to category goslim_pir
* Added GO:0009521 to category goslim_pir
* Added GO:0009536 to category goslim_pir
* Added GO:0009579 to category goslim_pir
* Added GO:0009657 to category goslim_pir
* Added GO:0009914 to category goslim_pir
* Added GO:0009975 to category goslim_pir
* Added GO:0009986 to category goslim_pir
* Added GO:0009987 to category goslim_pir
* Added GO:0010118 to category goslim_pir
* Added GO:0010191 to category goslim_pir
* Added GO:0010316 to category goslim_pir
* Added GO:0015031 to category goslim_pir
* Added GO:0015074 to category goslim_pir
* Deleted synonym "symporter activity" from GO:0015293
* Added GO:0015457 to category goslim_pir
* Deleted synonym "glycerol phosphate-importing ATPase activity" from GO:0015610
* Added GO:0015669 to category goslim_pir
* Added GO:0015791 to category goslim_pir
* Added GO:0015833 to category goslim_pir
* Deleted synonym "alpha-factor export" from GO:0015833
* Added GO:0015835 to category goslim_pir
* Added GO:0015837 to category goslim_pir
* Added GO:0015849 to category goslim_pir
* Added GO:0015891 to category goslim_pir
* Added GO:0015893 to category goslim_pir
* Added GO:0015920 to category goslim_pir
* Added GO:0015931 to category goslim_pir
* Added GO:0015935 to category goslim_pir
* Added GO:0015948 to category goslim_pir
* Added GO:0015949 to category goslim_pir
* Added GO:0015976 to category goslim_pir
* Added GO:0015979 to category goslim_pir
* Added GO:0016010 to category goslim_pir
* Added GO:0016020 to category goslim_pir
* Added GO:0016028 to category goslim_pir
* Added GO:0016032 to category goslim_pir
* Added GO:0016043 to category goslim_pir
* Added GO:0016044 to category goslim_pir
* Added GO:0016049 to category goslim_pir
* Added GO:0016050 to category goslim_pir
* Added GO:0016070 to category goslim_pir
* Added GO:0016192 to category goslim_pir
* Added GO:0016209 to category goslim_pir
* Added GO:0016458 to category goslim_pir
* Added GO:0016469 to category goslim_pir
* Added GO:0016472 to category goslim_pir
* Added GO:0016491 to category goslim_pir
* Added GO:0016530 to category goslim_pir
* Deleted GO:0016531 --OBO_REL:is_a--> GO:0005375
* Copied GO:0016531 to GO:0022892 with type OBO_REL:is_a
* Added GO:0016585 to category goslim_pir
* Added GO:0016591 to category goslim_pir
* Added GO:0016597 to category goslim_pir
* Added GO:0016610 to category goslim_pir
* Added GO:0016740 to category goslim_pir
* Deleted synonym "oximinotransferase activity" from GO:0016770
* Added GO:0016787 to category goslim_pir
* Added GO:0016829 to category goslim_pir
* Added GO:0016853 to category goslim_pir
* Added GO:0016874 to category goslim_pir
* Deleted synonym "proteasome ATPase activity" from GO:0016887
* Added GO:0016942 to category goslim_pir
* Added GO:0017053 to category goslim_pir
* Added GO:0017144 to category goslim_pir
* Added GO:0018942 to category goslim_pir
* Added GO:0019012 to category goslim_pir
* Added GO:0019213 to category goslim_pir
* Added GO:0019239 to category goslim_pir
* Added GO:0019538 to category goslim_pir
* Added GO:0019748 to category goslim_pir
* Added GO:0019814 to category goslim_pir
* Added GO:0019825 to category goslim_pir
* Added GO:0019840 to category goslim_pir
* Added GO:0019842 to category goslim_pir
* Added GO:0019861 to category goslim_pir
* Deleted synonym "membrane-associated protein with guanylate kinase activity interacting" from GO:0019899
* Added GO:0020015 to category goslim_pir
* Added GO:0020022 to category goslim_pir
* Added GO:0022406 to category goslim_pir
* Copied GO:0022407 to GO:0016337 with type part_of
* Added GO:0022411 to category goslim_pir
* Added GO:0022607 to category goslim_pir
* Added GO:0022610 to category goslim_pir
* Deleted synonym "porin activity" from GO:0022829
* Added GO:0030076 to category goslim_pir
* Added GO:0030112 to category goslim_pir
* Added GO:0030115 to category goslim_pir
* Added GO:0030119 to category goslim_pir
* Added GO:0030175 to category goslim_pir
* Added GO:0030188 to category goslim_pir
* Added GO:0030234 to category goslim_pir
* Added GO:0030246 to category goslim_pir
* Added GO:0030312 to category goslim_pir
* Added GO:0030313 to category goslim_pir
* Added GO:0030427 to category goslim_pir
* Added GO:0030428 to category goslim_pir
* Added GO:0030431 to category goslim_pir
* Added GO:0030496 to category goslim_pir
* Added GO:0030528 to category goslim_pir
* Added GO:0030529 to category goslim_pir
* Added GO:0030532 to category goslim_pir
* Added GO:0030677 to category goslim_pir
* Added GO:0030684 to category goslim_pir
* Added GO:0030689 to category goslim_pir
* Added GO:0030880 to category goslim_pir
* Added GO:0030894 to category goslim_pir
* Added GO:0030904 to category goslim_pir
* Added GO:0030929 to category goslim_pir