[go-diff] GO update 10/02/2007

Tue Oct 2 21:30:40 PDT 2007

OBODIFF of gene_ontology_edit.obo version 5.489 by 5.490

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0032594
* Created object of type obo:TERM with id GO:0032595
* Created object of type obo:TERM with id GO:0032596
* Created object of type obo:TERM with id GO:0032597
* Created object of type obo:TERM with id GO:0032598
* Created object of type obo:TERM with id GO:0032599
* Created object of type obo:TERM with id GO:0032600
* Created object of type obo:TERM with id GO:0033606
* Created object of type obo:TERM with id GO:0033608
* Created object of type obo:TERM with id GO:0033609
* Created object of type obo:TERM with id GO:0033610
* Created object of type obo:TERM with id GO:0033611
* Populated new object GO:0032594 (macro)
  * Changed name of GO:0032594 from "<new term>" to "protein transport within lipid bilayer"
  * Set definition of GO:0032594 to "The directed movement of a protein within a lipid bilayer."
  * Added definition dbxref GOC:mah to GO:0032594
  * Added synonym "protein translocation within membrane" to GO:0032594
  * Changed synonym scope of GO:0032594 from "Related" to "Exact"
  * Added synonym "receptor translocation within membrane" to GO:0032594
  * Changed synonym scope of GO:0032594 from "Related" to "Narrow"
  * Added synonym "receptor transport within lipid bilayer" to GO:0032594
  * Changed synonym scope of GO:0032594 from "Related" to "Narrow"
  * Copied GO:0032594 to GO:0015031 with type OBO_REL:is_a
  * Copied GO:0032594 to GO:0016044 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032594
* Populated new object GO:0032595 (macro)
  * Changed name of GO:0032595 from "<new term>" to "B cell receptor transport within lipid bilayer"
  * Set definition of GO:0032595 to "The directed movement of a B cell receptor within a lipid bilayer."
  * Added definition dbxref GOC:mah to GO:0032595
  * Added synonym "B cell receptor translocation within membrane" to GO:0032595
  * Changed synonym scope of GO:0032595 from "Related" to "Exact"
  * Added synonym "BCR translocation within membrane" to GO:0032595
  * Changed synonym scope of GO:0032595 from "Related" to "Exact"
  * Added synonym "BCR transport within lipid bilayer" to GO:0032595
  * Changed synonym scope of GO:0032595 from "Related" to "Exact"
  * Copied GO:0032595 to GO:0032594 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032595
* Populated new object GO:0032596 (macro)
  * Changed name of GO:0032596 from "<new term>" to "protein transport into lipid raft"
  * Set definition of GO:0032596 to "The directed movement of a protein into a lipid raft."
  * Added definition dbxref GOC:mah to GO:0032596
  * Added synonym "protein translocation into lipid raft" to GO:0032596
  * Changed synonym scope of GO:0032596 from "Related" to "Exact"
  * Added synonym "receptor translocation into lipid raft" to GO:0032596
  * Changed synonym scope of GO:0032596 from "Related" to "Narrow"
  * Added synonym "receptor transport into lipid raft" to GO:0032596
  * Changed synonym scope of GO:0032596 from "Related" to "Narrow"
  * Copied GO:0032596 to GO:0032594 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032596
* Populated new object GO:0032597 (macro)
  * Changed name of GO:0032597 from "<new term>" to "B cell receptor transport into lipid raft"
  * Set definition of GO:0032597 to "The directed movement of a B cell receptor into a lipid raft."
  * Added definition dbxref GOC:mah to GO:0032597
  * Added synonym "B cell receptor translocation into lipid raft" to GO:0032597
  * Changed synonym scope of GO:0032597 from "Related" to "Exact"
  * Added synonym "BCR translocation into lipid raft" to GO:0032597
  * Changed synonym scope of GO:0032597 from "Related" to "Exact"
  * Added synonym "BCR transport into lipid raft" to GO:0032597
  * Changed synonym scope of GO:0032597 from "Related" to "Exact"
  * Copied GO:0032597 to GO:0032596 with type OBO_REL:is_a
  * Copied GO:0032597 to GO:0032595 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032597
* Populated new object GO:0032598 (macro)
  * Changed name of GO:0032598 from "<new term>" to "B cell receptor transport into immunological synapse"
  * Set definition of GO:0032598 to "The directed movement of a B cell receptor into an immunological synapse."
  * Added definition dbxref GOC:mah to GO:0032598
  * Added synonym "B cell receptor translocation into immunological synapse" to GO:0032598
  * Changed synonym scope of GO:0032598 from "Related" to "Exact"
  * Added synonym "BCR translocation into immunological synapse" to GO:0032598
  * Changed synonym scope of GO:0032598 from "Related" to "Exact"
  * Added synonym "BCR transport into immunological synapse" to GO:0032598
  * Changed synonym scope of GO:0032598 from "Related" to "Exact"
  * Copied GO:0032598 to GO:0032597 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032598
* Populated new object GO:0032599 (macro)
  * Changed name of GO:0032599 from "<new term>" to "protein transport out of lipid raft"
  * Set definition of GO:0032599 to "The directed movement of a protein out of a lipid raft."
  * Added definition dbxref GOC:mah to GO:0032599
  * Added synonym "protein translocation out of lipid raft" to GO:0032599
  * Changed synonym scope of GO:0032599 from "Related" to "Exact"
  * Added synonym "receptor translocation out of lipid raft" to GO:0032599
  * Changed synonym scope of GO:0032599 from "Related" to "Narrow"
  * Added synonym "receptor transport out of lipid raft" to GO:0032599
  * Changed synonym scope of GO:0032599 from "Related" to "Narrow"
  * Copied GO:0032599 to GO:0032594 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032599
* Populated new object GO:0032600 (macro)
  * Changed name of GO:0032600 from "<new term>" to "chemokine receptor transport out of lipid raft"
  * Set definition of GO:0032600 to "The directed movement of a chemokine receptor out of a lipid raft."
  * Added definition dbxref GOC:mah to GO:0032600
  * Added synonym "chemokine receptor translocation out of lipid raft" to GO:0032600
  * Changed synonym scope of GO:0032600 from "Related" to "Exact"
  * Copied GO:0032600 to GO:0033606 with type OBO_REL:is_a
  * Copied GO:0032600 to GO:0032599 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0032600
* Populated new object GO:0033606 (macro)
  * Changed name of GO:0033606 from "<new term>" to "chemokine receptor transport within lipid bilayer"
  * Set definition of GO:0033606 to "The directed movement of a chemokine receptor within a lipid bilayer."
  * Added definition dbxref GOC:mah to GO:0033606
  * Added synonym "chemokine receptor translocation within membrane" to GO:0033606
  * Changed synonym scope of GO:0033606 from "Related" to "Exact"
  * Copied GO:0033606 to GO:0032594 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033606
* Populated new object GO:0033608 (macro)
  * Changed name of GO:0033608 from "<new term>" to "formyl-CoA transferase activity"
  * Set definition of GO:0033608 to "Catalysis of the reaction formyl-CoA + oxalate = formate + oxalyl-CoA."
  * Added definition dbxref EC:2.8.3.16 to GO:0033608
  * Added definition dbxref GOC:mlg to GO:0033608
  * Added general dbxref EC:2.8.3.16 to GO:0033608
  * Added synonym "formyl-CoA oxalate CoA-transferase activity" to GO:0033608
  * Added general dbxref EC:2.8.3.16 to synonym formyl-CoA oxalate CoA-transferase activity of GO:0033608
  * Changed synonym scope of GO:0033608 from "Related" to "Exact"
  * Added synonym "formyl-CoA transferase activity" to GO:0033608
  * Added general dbxref EC:2.8.3.16 to synonym formyl-CoA transferase activity of GO:0033608
  * Changed synonym scope of GO:0033608 from "Related" to "Exact"
  * Added synonym "formyl-CoA:oxalate CoA-transferase activity" to GO:0033608
  * Added general dbxref EC:2.8.3.16 to synonym formyl-CoA:oxalate CoA-transferase activity of GO:0033608
  * Changed synonym scope of GO:0033608 from "Related" to "Exact"
  * Added synonym "formyl-coenzyme A transferase activity" to GO:0033608
  * Added general dbxref EC:2.8.3.16 to synonym formyl-coenzyme A transferase activity of GO:0033608
  * Changed synonym scope of GO:0033608 from "Related" to "Exact"
  * Copied GO:0033608 to GO:0008410 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033608
* Populated new object GO:0033609 (macro)
  * Changed name of GO:0033609 from "<new term>" to "oxalate metabolic process"
  * Set definition of GO:0033609 to "The chemical reactions and pathways involving oxalate, the organic acid ethanedioate."
  * Added definition dbxref ChEBI:30623 to GO:0033609
  * Added definition dbxref GOC:mlg to GO:0033609
  * Added synonym "ethanedioate metabolic process" to GO:0033609
  * Changed synonym scope of GO:0033609 from "Related" to "Exact"
  * Added synonym "ethanedioic acid metabolic process" to GO:0033609
  * Changed synonym scope of GO:0033609 from "Related" to "Exact"
  * Added synonym "oxalate metabolism" to GO:0033609
  * Changed synonym scope of GO:0033609 from "Related" to "Exact"
  * Added synonym "oxalic acid metabolic process" to GO:0033609
  * Changed synonym scope of GO:0033609 from "Related" to "Exact"
  * Copied GO:0033609 to GO:0043648 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033609
* Populated new object GO:0033610 (macro)
  * Changed name of GO:0033610 from "<new term>" to "oxalate biosynthetic process"
  * Set definition of GO:0033610 to "The chemical reactions and pathways resulting in the formation of oxalate, the organic acid ethanedioate."
  * Added definition dbxref ChEBI:30623 to GO:0033610
  * Added definition dbxref GOC:mlg to GO:0033610
  * Added synonym "ethanedioate biosynthetic process" to GO:0033610
  * Changed synonym scope of GO:0033610 from "Related" to "Exact"
  * Added synonym "ethanedioic acid biosynthetic process" to GO:0033610
  * Changed synonym scope of GO:0033610 from "Related" to "Exact"
  * Added synonym "oxalate anabolism" to GO:0033610
  * Changed synonym scope of GO:0033610 from "Related" to "Exact"
  * Added synonym "oxalate biosynthesis" to GO:0033610
  * Changed synonym scope of GO:0033610 from "Related" to "Exact"
  * Added synonym "oxalate formation" to GO:0033610
  * Changed synonym scope of GO:0033610 from "Related" to "Exact"
  * Added synonym "oxalate synthesis" to GO:0033610
  * Changed synonym scope of GO:0033610 from "Related" to "Exact"
  * Added synonym "oxalic acid biosynthetic process" to GO:0033610
  * Changed synonym scope of GO:0033610 from "Related" to "Exact"
  * Copied GO:0033610 to GO:0033609 with type OBO_REL:is_a
  * Copied GO:0033610 to GO:0043650 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033610
* Populated new object GO:0033611 (macro)
  * Changed name of GO:0033611 from "<new term>" to "oxalate catabolic process"
  * Set definition of GO:0033611 to "The chemical reactions and pathways resulting in the breakdown of oxalate, the organic acid ethanedioate."
  * Added definition dbxref ChEBI:30623 to GO:0033611
  * Added definition dbxref GOC:mlg to GO:0033611
  * Added synonym "ethanedioate catabolic process" to GO:0033611
  * Changed synonym scope of GO:0033611 from "Related" to "Exact"
  * Added synonym "ethanedioic acid catabolic process" to GO:0033611
  * Changed synonym scope of GO:0033611 from "Related" to "Exact"
  * Added synonym "oxalate breakdown" to GO:0033611
  * Changed synonym scope of GO:0033611 from "Related" to "Exact"
  * Added synonym "oxalate catabolism" to GO:0033611
  * Changed synonym scope of GO:0033611 from "Related" to "Exact"
  * Added synonym "oxalate degradation" to GO:0033611
  * Changed synonym scope of GO:0033611 from "Related" to "Exact"
  * Added synonym "oxalic acid catabolic process" to GO:0033611
  * Changed synonym scope of GO:0033611 from "Related" to "Exact"
  * Copied GO:0033611 to GO:0043649 with type OBO_REL:is_a
  * Copied GO:0033611 to GO:0033609 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033611
* Deleted synonym "metaphase chromosome" from GO:0000794
* Deleted synonym "ADP-ribosylarginine hydrolase activity" from GO:0003875
* Deleted synonym "transmembrane ephrin" from GO:0005887
* Deleted synonym "DNA replication accessory factor" from GO:0006260
* Deleted synonym "DNA replication factor" from GO:0006260
* Deleted synonym "protein-pyrroloquinoline-quinone linkage" from GO:0006464
* Deleted synonym "proteoglycan sulfate transfer" from GO:0006790
* Deleted synonym "dynein ATPase activity" from GO:0007018
* Deleted synonym "SAP kinase 3 activity" from GO:0007254
* Deleted synonym "SAP kinase 4 activity" from GO:0007254
* Deleted synonym "SAP kinase 5 activity" from GO:0007254
* Deleted synonym "blood coagulation factor activity" from GO:0007596
* Deleted synonym "L-ribulose-phosphate 4-epimerase activity" from GO:0008742
* Deleted general dbxref :EC e from synonym NADH-nitrate reductase activity of GO:0009703
* Added general dbxref EC:1.7.1.1 to synonym NADH-nitrate reductase activity of GO:0009703
* Added synonym "ethanedioate transport" to GO:0019532
* Changed synonym scope of GO:0019532 from "Related" to "Exact"
* Added synonym "ethanedioic acid transport" to GO:0019532
* Changed synonym scope of GO:0019532 from "Related" to "Exact"
* Deleted synonym "actin cytoskeleton reorganization" from GO:0030036
* Deleted synonym "myosin ATPase activity" from GO:0030048
* Deleted synonym "3,7-dimethylquercitin 4'-O-methyltransferase activity" from GO:0030758
* Deleted synonym "regulation of actin thin filament length activity" from GO:0030832
* Deleted synonym "mRNA catabolic process, deadenylation-independent decay" from GO:0031086
* Deleted synonym "beta-glucosidase activity" from GO:0031217
* Deleted synonym "eukaryotic 80S initiation complex" from GO:0033291
* Deleted synonym "activation of innate immune response" from GO:0045089
* Deleted synonym "aryl-alcohol dehydrogenase (NADP+) activity" from GO:0047681
* Deleted synonym "carboxycyclohexadienyl dehydratase activity" from GO:0047769
* Deleted synonym "cis-2-enoyl-CoA reductase (NADPH) activity" from GO:0047774
* Deleted synonym "formate dehydrogenase (NADP+) activity" from GO:0047899
* Deleted synonym "lymph gland development" from GO:0048542
* Deleted synonym "elevation of smooth endoplasmic reticulum calcium ion concentration" from GO:0051564
* Added synonym "elevation of smooth ER calcium ion concentration" to GO:0051564
* Changed synonym scope of GO:0051564 from "Related" to "Exact"
* Deleted synonym "regulation of cardiac muscle growth" from GO:0055021