[go-diff] GO update 10/03/2007

Wed Oct 3 21:30:40 PDT 2007

OBODIFF of gene_ontology_edit.obo version 5.490 by 5.491

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Deleted synonym "mitotic chromosome" from GO:0000794
* Deleted synonym "ameboidal cell migration" from GO:0001667
* Added synonym "ameboid cell migration" to GO:0001667
* Changed synonym scope of GO:0001667 from "Related" to "Exact"
* Deleted synonym "T-helper 2 cell lineage commitment" from GO:0002297
* Deleted synonym "alpha-2 macroglobulin receptor-associated protein activity" from GO:0005102
* Deleted synonym "membrane-associated guanylate kinase" from GO:0005102
* Deleted synonym "N-methyl-D-aspartate receptor-associated protein activity" from GO:0005102
* Deleted synonym "nicotinic acetylcholine receptor-associated protein activity" from GO:0005102
* Deleted synonym "inward rectifier channel" from GO:0005242
* Deleted synonym "inorganic phosphate transmembrane transporter activity" from GO:0005315
* Deleted synonym "fibrillin" from GO:0005509
* Deleted synonym "detection of calcium ion" from GO:0005513
* Added synonym "calcium ion detection" to GO:0005513
* Changed synonym scope of GO:0005513 from "Related" to "Exact"
* Deleted synonym "death receptor adaptor protein activity" from GO:0005515
* Deleted synonym "death receptor interacting protein activity" from GO:0005515
* Deleted synonym "death receptor-associated factor activity" from GO:0005515
* Deleted synonym "N-methyl-D-aspartate receptor-associated protein activity" from GO:0005515
* Deleted synonym "free L-amino acid racemization" from GO:0006520
* Deleted synonym "acute-phase response protein activity" from GO:0006953
* Deleted synonym "vesicle fusion" from GO:0007086
* Deleted synonym "membrane-associated guanylate kinase" from GO:0007155
* Deleted synonym "ecdysone receptor holocomplex" from GO:0008230
* Deleted synonym "4-hydroxybenzoate octaprenyltransferase activity" from GO:0008412
* Deleted synonym "UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity" from GO:0008765
* Deleted synonym "chloroplast thylakoid" from GO:0009534
* Deleted synonym "antiviral response protein activity" from GO:0009615
* Changed name of GO:0015204 from "urea transporter activity" to "urea transmembrane transporter activity"
* Changed definition of GO:0015204 from "Enables the directed movement of urea into, out of, within or between cells. Urea is the water soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle. It is the main nitrogen-containing (urinary) excretion product in ureotelic animals." to "Enables the directed movement of urea cross a membrane into, out of, within or between cells. Urea is the water soluble compound H2N-CO-NH2, produced in the liver via the ornithine-urea cycle. It is the main nitrogen-containing (urinary) excretion product in ureotelic animals."
* Added synonym "urea transporter activity" to GO:0015204
* Changed synonym scope of GO:0015204 from "Related" to "Broad"
* Copied GO:0015204 to GO:0022891 with type OBO_REL:is_a
* Changed name of GO:0015228 from "coenzyme A transporter activity" to "coenzyme A transmembrane transporter activity"
* Changed definition of GO:0015228 from "Enables the directed movement of coenzyme A into, out of, within or between cells. Coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, is an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester." to "Enables the directed movement of coenzyme A across a membrane into, out of, within or between cells. Coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, is an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester."
* Added synonym "coenzyme A transporter activity" to GO:0015228
* Changed synonym scope of GO:0015228 from "Related" to "Broad"
* Copied GO:0015228 to GO:0022891 with type OBO_REL:is_a
* Changed name of GO:0015230 from "FAD transporter activity" to "FAD transmembrane transporter activity"
* Changed definition of GO:0015230 from "Enables the directed movement of flavin-adenine dinucleotide (FAD) into, out of, within or between cells. FAD forms the coenzyme of the prosthetic group of various flavoprotein oxidoreductase enzymes, in which it functions as an electron acceptor by being reversibly converted to its reduced form." to "Enables the directed movement of flavin-adenine dinucleotide (FAD) across a membrane into, out of, within or between cells. FAD forms the coenzyme of the prosthetic group of various flavoprotein oxidoreductase enzymes, in which it functions as an electron acceptor by being reversibly converted to its reduced form."
* Added synonym "FAD transporter activity" to GO:0015230
* Changed synonym scope of GO:0015230 from "Related" to "Broad"
* Copied GO:0015230 to GO:0022891 with type OBO_REL:is_a
* Deleted synonym "siderophore transporter activity" from GO:0015343
* Deleted synonym "ATPase activity, coupled to transmembrane movement of substances" from GO:0015405
* Deleted synonym "monoterpene metabolic process" from GO:0016098
* Deleted synonym "monoterpene metabolism" from GO:0016098
* Deleted synonym "terpene biosynthesis" from GO:0016114
* Deleted synonym "terpene biosynthetic process" from GO:0016114
* Deleted synonym "vesicle fusion" from GO:0016189
* Deleted synonym "vesicle fusion" from GO:0016192
* Deleted synonym "ubiquitin" from GO:0016567
* Deleted synonym "dioxygenase activity" from GO:0016702
* Deleted synonym "vesicle fusion" from GO:0019817
* Deleted synonym "periplasmic space" from GO:0030287
* Deleted synonym "periplasm" from GO:0030288
* Deleted synonym "periplasmic space" from GO:0030288
* Deleted synonym "nuclear translocation of MAPK during sporulation (sensu Fungi)" from GO:0030437
* Deleted synonym "nuclear translocation of MAPK during sporulation (sensu Saccharomyces)" from GO:0030437
* Changed definition of GO:0031297 from "The process by which a DNA replication fork that has stalled (due to DNA damage, DNA secondary structure, bound proteins, dNTP shortage, or other causes) is repaired by a recombinational mechanism." to "The process by which a DNA replication fork that has stalled (due to DNA damage, DNA secondary structure, bound proteins, dNTP shortage, or other causes) is repaired and replication is restarted."
* Added definition dbxref PMID:17660542 to GO:0031297
* Added synonym "recovery from replication fork stalling" to GO:0031297
* Changed synonym scope of GO:0031297 from "Related" to "Exact"
* Deleted GO:0031297 --OBO_REL:is_a--> GO:0006310
* Copied GO:0031297 to GO:0006259 with type OBO_REL:is_a
* Changed name of GO:0031925 from "pyridoxal transporter activity" to "pyridoxal transmembrane transporter activity"
* Changed definition of GO:0031925 from "Enables the directed movement of pyridoxal into, out of, within or between cells. Pyridoxal, 3-hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxaldehyde, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate." to "Enables the directed movement of pyridoxal across a membrane into, out of, within or between cells. Pyridoxal, 3-hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxaldehyde, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate."
* Added synonym "pyridoxal transporter activity" to GO:0031925
* Changed synonym scope of GO:0031925 from "Related" to "Broad"
* Copied GO:0031925 to GO:0022891 with type OBO_REL:is_a
* Changed name of GO:0031928 from "pyridoxine transporter activity" to "pyridoxine transmembrane transporter activity"
* Changed definition of GO:0031928 from "Enables the directed movement of pyridoxine into, out of, within or between cells. Pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate." to "Enables the directed movement of pyridoxine across a membrane into, out of, within or between cells. Pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate."
* Added synonym "pyridoxine transporter activity" to GO:0031928
* Changed synonym scope of GO:0031928 from "Related" to "Broad"
* Copied GO:0031928 to GO:0022891 with type OBO_REL:is_a
* Deleted synonym "lysine biosynthetic process via diaminopimelate, dehydrogenase pathway" from GO:0033361
* Deleted synonym "activation of MAPK during sporulation (sensu Fungi)" from GO:0042173
* Deleted synonym "activation of MAPK during sporulation (sensu Saccharomyces)" from GO:0042173
* Deleted synonym "activation of MAPKK during sporulation (sensu Fungi)" from GO:0042173
* Deleted synonym "activation of MAPKK during sporulation (sensu Saccharomyces)" from GO:0042173
* Deleted synonym "activation of MAPKKK during sporulation (sensu Fungi)" from GO:0042173
* Deleted synonym "activation of MAPKKK during sporulation (sensu Saccharomyces)" from GO:0042173
* Deleted synonym "inactivation of MAPK during sporulation (sensu Fungi)" from GO:0042173
* Deleted synonym "inactivation of MAPK during sporulation (sensu Saccharomyces)" from GO:0042173
* Added synonym "replication fork stalling" to GO:0043111
* Changed synonym scope of GO:0043111 from "Related" to "Exact"
* Deleted synonym "activation of MAPK activity" from GO:0043406
* Deleted synonym "protein import into mitochondrial intermembrane space, direct" from GO:0045044
* Deleted synonym "secretin (sensu Bacteria)" from GO:0045203
* Deleted synonym "allatostatin" from GO:0045968
* Deleted synonym "activin" from GO:0046881
* Deleted synonym "aryl-aldehyde dehydrogenase (NADP+) activity" from GO:0047683
* Deleted synonym "D-xylose 1-dehydrogenase (NADP+) activity" from GO:0047837
* Deleted synonym "glucose 1-dehydrogenase (NADP+) activity" from GO:0047935
* Deleted synonym "L-glucuronate reductase activity" from GO:0047939
* Deleted synonym "glycerol 2-dehydrogenase (NADP+) activity" from GO:0047953
* Deleted synonym "lactaldehyde reductase (NADPH) activity" from GO:0050039
* Deleted synonym "mannitol 2-dehydrogenase (NADP+) activity" from GO:0050085
* Deleted synonym "NADH dehydrogenase (quinone) activity" from GO:0050136
* Deleted synonym "pyruvate dehydrogenase (NADP+) activity" from GO:0050243
* Deleted synonym "sorbose 5-dehydrogenase (NADP+) activity" from GO:0050287
* Deleted synonym "trans-2-enoyl-CoA reductase (NAD+) activity" from GO:0050343
* Deleted synonym "tetrachloroethene reductive dehalogenase activity" from GO:0050629
* Deleted synonym "activation of immune response" from GO:0050778
* Deleted synonym "beta-galactosidase stabilization activity" from GO:0050821
* Deleted synonym "membrane-associated guanylate kinase" from GO:0050839
* Deleted synonym "negative regulation of NK T cell activation" from GO:0051134
* Deleted synonym "inhibition of norepinephrine uptake" from GO:0051622
* Copied GO:0051624 to GO:0051622 with type OBO_REL:is_a
* Deleted synonym "sesquiterpene synthase activity" from GO:0051762
* Deleted synonym "acetylenecarboxylate hydratase activity, producing 3-hydroxypropenoate" from GO:0051909