[go-diff] GO update 10/04/2007

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_edit.obo version 5.491 by 5.492

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Deleted synonym "bud scar accumulation" from GO:0000282
* Deleted synonym "telomere" from GO:0000782
* Deleted synonym "cell division" from GO:0000910
* Deleted synonym "invasive growth" from GO:0001403
* Deleted synonym "viral host shutoff protein" from GO:0004534
* Deleted synonym "diazepam binding inhibitor activity" from GO:0004857
* Deleted GO:0005963 --OBO_REL:is_a--> GO:0005941
* Copied GO:0005963 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0005963 to GO:0044424 with type OBO_REL:is_a
* Deleted GO:0005964 --OBO_REL:is_a--> GO:0005941
* Copied GO:0005964 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0005964 to GO:0044444 with type OBO_REL:is_a
* Deleted GO:0005969 --OBO_REL:is_a--> GO:0005941
* Copied GO:0005969 to GO:0044444 with type OBO_REL:is_a
* Copied GO:0005969 to GO:0043234 with type OBO_REL:is_a
* Deleted GO:0005970 --OBO_REL:is_a--> GO:0005941
* Copied GO:0005970 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0005970 to GO:0044444 with type OBO_REL:is_a
* Deleted synonym "sesquiterpene metabolic process" from GO:0006714
* Deleted synonym "sesquiterpene metabolism" from GO:0006714
* Deleted synonym "terpene metabolic process" from GO:0006721
* Deleted synonym "terpene metabolism" from GO:0006721
* Deleted synonym "heavy cellular metal ion homeostasis" from GO:0006875
* Added synonym "cellular heavy metal ion homeostasis" to GO:0006875
* Changed synonym scope of GO:0006875 from "Related" to "Narrow"
* Changed name of GO:0008320 from "protein carrier activity" to "protein transmembrane transporter activity"
* Changed definition of GO:0008320 from "Catalysis of the transfer of proteins from one side of a membrane to the other." to "Catalysis of the transfer of a protein from one side of a membrane to the other."
* Added synonym "protein carrier activity" to GO:0008320
* Deleted synonym "cation transmembrane transporter activity" from GO:0008324
* Added synonym "transmembrane cation transporter activity" to GO:0008324
* Changed synonym scope of GO:0008324 from "Related" to "Exact"
* Deleted synonym "unfolded protein response, ligation of mRNA encoding UFP-specific transcription factor by RNA ligase" from GO:0008452
* Deleted synonym "X-His dipeptidase activity" from GO:0008769
* Deleted synonym "murein sacculus" from GO:0009275
* Deleted synonym "peptidoglycan" from GO:0009275
* Deleted synonym "murein sacculus" from GO:0009276
* Deleted synonym "peptidoglycan" from GO:0009276
* Copied GO:0009318 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0009318 to GO:0044424 with type OBO_REL:is_a
* Deleted GO:0009330 --OBO_REL:is_a--> GO:0005941
* Copied GO:0009330 to GO:0044424 with type OBO_REL:is_a
* Copied GO:0009330 to GO:0043234 with type OBO_REL:is_a
* Deleted GO:0009331 --OBO_REL:is_a--> GO:0005941
* Copied GO:0009331 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0009331 to GO:0044444 with type OBO_REL:is_a
* Deleted GO:0009332 --OBO_REL:is_a--> GO:0005941
* Copied GO:0009332 to GO:0044444 with type OBO_REL:is_a
* Copied GO:0009332 to GO:0043234 with type OBO_REL:is_a
* Deleted GO:0009336 --OBO_REL:is_a--> GO:0005941
* Copied GO:0009336 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0009336 to GO:0044444 with type OBO_REL:is_a
* Copied GO:0009338 to GO:0044424 with type OBO_REL:is_a
* Copied GO:0009338 to GO:0043234 with type OBO_REL:is_a
* Deleted GO:0009339 --OBO_REL:is_a--> GO:0005941
* Copied GO:0009339 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0009339 to GO:0044444 with type OBO_REL:is_a
* Deleted GO:0009344 --OBO_REL:is_a--> GO:0005941
* Copied GO:0009344 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0009344 to GO:0044464 with type OBO_REL:is_a
* Deleted GO:0009357 --OBO_REL:is_a--> GO:0005941
* Copied GO:0009357 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0009357 to GO:0044444 with type OBO_REL:is_a
* Deleted synonym "antiviral response" from GO:0009615
* Copied GO:0009703 to GO:0008940 with type OBO_REL:is_a
* Deleted synonym "proline/glycine/betaine:hydrogen/sodium symporter activity" from GO:0015294
* Deleted synonym "betaine/GABA:sodium symporter activity" from GO:0015370
* Changed name of GO:0015450 from "protein transmembrane transporter activity" to "P-P-bond-hydrolysis-driven protein transmembrane transporter activity"
* Deleted synonym "chloroplast envelope protein translocase" from GO:0015450
* Deleted synonym "mitochondrial protein translocase" from GO:0015450
* Copied GO:0015450 to GO:0008320 with type OBO_REL:is_a
* Deleted synonym "sesquiterpene catabolic process" from GO:0016107
* Deleted synonym "sesquiterpene catabolism" from GO:0016107
* Deleted GO:0016222 --OBO_REL:is_a--> GO:0005941
* Copied GO:0016222 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0016222 to GO:0044444 with type OBO_REL:is_a
* Added comment "This term was made obsolete because, according to the Enzyme Commission, there is no evidence that this enzymatic activity exists."
* Deleted GO:0018512 --OBO_REL:is_a--> GO:0016628
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at a8422d
* Deleted GO:0021733 --OBO_REL:is_a--> GO:0021545
* Destroyed object GO:0021733
* Deleted GO:0021734 --OBO_REL:is_a--> GO:0021545
* Destroyed object GO:0021734
* Deleted synonym "lateral geniculate nucleus development" from GO:0021771
* Deleted synonym "T cell differentiation" from GO:0030217
* Added synonym "T-cell development" to GO:0030217
* Changed synonym scope of GO:0030217 from "Related" to "Exact"
* Deleted synonym "11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity" from GO:0030766
* Deleted synonym "heterotrimeric G-protein GTPase, alpha-subunit" from GO:0031680
* Deleted GO:0031680 --OBO_REL:is_a--> GO:0005941
* Copied GO:0031680 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0031680 to GO:0044444 with type OBO_REL:is_a
* Deleted synonym "vitamin A metabolic process" from GO:0042573
* Deleted synonym "vitamin A metabolism" from GO:0042573
* Deleted synonym "vitamin A metabolic process" from GO:0042574
* Deleted synonym "vitamin A metabolism" from GO:0042574
* Deleted synonym "prospore" from GO:0042763
* Deleted synonym "vitamin A metabolic process" from GO:0042905
* Deleted synonym "vitamin A metabolism" from GO:0042905
* Added synonym "heterophil degranulation" to GO:0043312
* Added comment "Note that the presence of exogenous double-stranded RNA is usually indicative of a viral infection. Consider also annotating to 'response to virus ; GO:0009615'."
* Changed definition of GO:0043330 from "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus, which is usually indicative of a viral infection." to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an exogenous double-stranded RNA stimulus."
* Deleted GO:0043330 --OBO_REL:is_a--> GO:0009615
* Deleted synonym "NEDD8 class-dependent protein catabolic process" from GO:0045116
* Deleted synonym "NEDD8 class-dependent protein catabolism" from GO:0045116
* Deleted synonym "protein neddylation during NEDD8 class-dependent protein catabolic process" from GO:0045116
* Deleted synonym "protein neddylation during NEDD8 class-dependent protein catabolism" from GO:0045116
* Deleted synonym "naringenin 3-dioxygenase activity" from GO:0045486
* Changed name of GO:0045499 from "chemorepellant activity" to "chemorepellent activity"
* Deleted synonym "chemorepellent activity" from GO:0045499
* Added synonym "chemorepellant activity" to GO:0045499
* Changed synonym scope of GO:0045499 from "Related" to "Exact"
* Deleted synonym "negative regulation of Notch signaling pathway" from GO:0045746
* Added synonym "negative regulation of Notch signalling pathway" to GO:0045746
* Changed synonym scope of GO:0045746 from "Related" to "Exact"
* Deleted synonym "isoflavone 2'-hydroxylase activity" from GO:0047957
* Added comment "This term was added by GO_REF:0000021."
* added secondary id GO:0021734 to GO:0048909
* Added definition dbxref GOC:cls to GO:0048909
* Added definition dbxref GOC:dgh to GO:0048909
* Added definition dbxref GOC:dph to GO:0048909
* Added definition dbxref GOC:jic to GO:0048909
* Added definition dbxref GOC:mtg_15jun06 to GO:0048909
* Added synonym "ALLN development" to GO:0048909
* Changed synonym scope of GO:0048909 from "Related" to "Exact"
* Added synonym "rostral lateral line nerve development" to GO:0048909
* Changed synonym scope of GO:0048909 from "Related" to "Exact"
* Added comment "This term was added by GO_REF:0000021."
* added secondary id GO:0021733 to GO:0048918
* Added definition dbxref GOC:cls to GO:0048918
* Added definition dbxref GOC:dgh to GO:0048918
* Added definition dbxref GOC:dph to GO:0048918
* Added definition dbxref GOC:jic to GO:0048918
* Added definition dbxref GOC:mtg_15jun06 to GO:0048918
* Added synonym "caudal lateral line nerve development" to GO:0048918
* Changed synonym scope of GO:0048918 from "Related" to "Exact"
* Added synonym "PLLN development" to GO:0048918
* Changed synonym scope of GO:0048918 from "Related" to "Exact"
* Deleted synonym "N-acetyl-beta-alanine deacetylase activity" from GO:0050117
* Deleted synonym "oxoglutarate dehydrogenase (NADP+) activity" from GO:0050164
* Copied GO:0050463 to GO:0008940 with type OBO_REL:is_a
* Copied GO:0050464 to GO:0008940 with type OBO_REL:is_a
* Changed name of GO:0050688 from "regulation of antiviral response" to "regulation of defense response to virus"
* Deleted synonym "regulation of response to virus" from GO:0050688
* Added synonym "regulation of antiviral response" to GO:0050688
* Changed synonym scope of GO:0050688 from "Related" to "Exact"
* Deleted GO:0050688 --part_of--> GO:0009615
* Copied GO:0050688 to GO:0051607 with type part_of
* Deleted GO:0050691 --part_of--> GO:0051607
* Deleted synonym "diazepam binding inhibitor activity" from GO:0050796
* Deleted synonym "diazepam binding inhibitor activity" from GO:0050810
* Deleted synonym "diazepam binding inhibitor activity" from GO:0050812
* Deleted synonym "viral-cell fusion molecule activity" from GO:0050839
* Deleted synonym "chemorepellant activity" from GO:0050929
* Deleted synonym "inhibition of dopamine uptake" from GO:0051585
* Added synonym "antiviral response" to GO:0051607
* Changed synonym scope of GO:0051607 from "Related" to "Exact"
* Copied GO:0051607 to GO:0002252 with type OBO_REL:is_a
* Deleted synonym "inhibition of serotonin uptake" from GO:0051612
* Deleted synonym "heavy cellular metal ion homeostasis" from GO:0055065