[go-diff] GO update 10/08/2007

Remote CVS for Gene Ontology gocvs at genome.Stanford.EDU
Mon Oct 8 21:30:42 PDT 2007 

OBODIFF of gene_ontology_edit.obo version 5.493 by 5.494

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0033612
* Created object of type obo:TERM with id GO:0033613
* Created object of type obo:TERM with id GO:0033614
* Created object of type obo:TERM with id GO:0033615
* Created object of type obo:TERM with id GO:0033616
* Created object of type obo:TERM with id GO:0033617
* Created object of type obo:TERM with id GO:0033618
* Populated new object GO:0033612 (macro)
  * Changed name of GO:0033612 from "<new term>" to "receptor serine/threonine kinase binding"
  * Set definition of GO:0033612 to "Interacting selectively with a receptor that possesses protein serine/threonine kinase activity."
  * Added definition dbxref GOC:mah to GO:0033612
  * Added synonym "transmembrane receptor protein serine/threonine kinase ligand binding" to GO:0033612
  * Copied GO:0033612 to GO:0005102 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033612
* Populated new object GO:0033613 (macro)
  * Changed name of GO:0033613 from "<new term>" to "transcription activator binding"
  * Set definition of GO:0033613 to "Interacting selectively with a transcription activator, any protein whose activity is required to initiate or upregulate transcription."
  * Added definition dbxref GOC:mah to GO:0033613
  * Copied GO:0033613 to GO:0005515 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033613
* Populated new object GO:0033614 (macro)
  * Changed name of GO:0033614 from "<new term>" to "chloroplast proton-transporting ATP synthase complex assembly"
  * Set definition of GO:0033614 to "The aggregation and bonding together of a proton-transporting ATP synthase in the chloroplast thylakoid membrane."
  * Added definition dbxref GOC:mah to GO:0033614
  * Copied GO:0033614 to GO:0009658 with type part_of
  * Copied GO:0033614 to GO:0043461 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033614
* Populated new object GO:0033615 (macro)
  * Changed name of GO:0033615 from "<new term>" to "mitochondrial proton-transporting ATP synthase complex assembly"
  * Set definition of GO:0033615 to "The aggregation and bonding together of a proton-transporting ATP synthase in the mitochondrial inner membrane."
  * Added definition dbxref GOC:mah to GO:0033615
  * Copied GO:0033615 to GO:0043461 with type OBO_REL:is_a
  * Copied GO:0033615 to GO:0007005 with type part_of
  * Assigned namespace "biological_process" to GO:0033615
* Populated new object GO:0033616 (macro)
  * Changed name of GO:0033616 from "<new term>" to "plasma membrane proton-transporting ATP synthase complex assembly"
  * Set definition of GO:0033616 to "The aggregation and bonding together of a proton-transporting ATP synthase in the plasma membrane."
  * Added definition dbxref GOC:mah to GO:0033616
  * Copied GO:0033616 to GO:0043461 with type OBO_REL:is_a
  * Copied GO:0033616 to GO:0007009 with type part_of
  * Assigned namespace "biological_process" to GO:0033616
* Populated new object GO:0033617 (macro)
  * Changed name of GO:0033617 from "<new term>" to "mitochondrial respiratory chain complex IV assembly"
  * Set definition of GO:0033617 to "The aggregation and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase) in the mitochondrial inner membrane."
  * Added definition dbxref GOC:mah to GO:0033617
  * Added GO:0033617 to category gosubset_prok
  * Added synonym "mitochondrial cytochrome c oxidase biogenesis" to GO:0033617
  * Changed synonym scope of GO:0033617 from "Related" to "Broad"
  * Added synonym "mitochondrial cytochrome c oxidase complex assembly" to GO:0033617
  * Changed synonym scope of GO:0033617 from "Related" to "Exact"
  * Copied GO:0033617 to GO:0008535 with type OBO_REL:is_a
  * Copied GO:0033617 to GO:0033108 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033617
* Populated new object GO:0033618 (macro)
  * Changed name of GO:0033618 from "<new term>" to "plasma membrane respiratory chain complex IV assembly"
  * Set definition of GO:0033618 to "The aggregation and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase) in the plasma membrane."
  * Added definition dbxref GOC:mah to GO:0033618
  * Added GO:0033618 to category gosubset_prok
  * Added synonym "plasma membrane cytochrome c oxidase biogenesis" to GO:0033618
  * Changed synonym scope of GO:0033618 from "Related" to "Broad"
  * Added synonym "plasma membrane cytochrome c oxidase complex assembly" to GO:0033618
  * Changed synonym scope of GO:0033618 from "Related" to "Exact"
  * Copied GO:0033618 to GO:0007009 with type part_of
  * Copied GO:0033618 to GO:0008535 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033618
* Deleted synonym "RAB small monomeric GTPase activity" from GO:0003924
* Deleted synonym "RAN small monomeric GTPase activity" from GO:0003924
* Deleted synonym "RAS small monomeric GTPase activity" from GO:0003924
* Deleted synonym "SAR small monomeric GTPase activity" from GO:0003924
* Added synonym "Rab small monomeric GTPase activity" to GO:0003924
* Changed synonym scope of GO:0003924 from "Related" to "Narrow"
* Added synonym "Ran small monomeric GTPase activity" to GO:0003924
* Changed synonym scope of GO:0003924 from "Related" to "Narrow"
* Added synonym "Ras small monomeric GTPase activity" to GO:0003924
* Changed synonym scope of GO:0003924 from "Related" to "Narrow"
* Added synonym "Sar small monomeric GTPase activity" to GO:0003924
* Changed synonym scope of GO:0003924 from "Related" to "Narrow"
* Deleted synonym "pyridoxamine-phosphate oxidase activity" from GO:0004733
* Deleted synonym "polyamine transmembrane transporter activity" from GO:0005275
* Copied GO:0006839 to GO:0007005 with type part_of
* Deleted synonym "vesicle-fusing ATPase activity" from GO:0006944
* Deleted synonym "proteasome endopeptidase activity" from GO:0008233
* Changed name of GO:0008535 from "cytochrome c oxidase complex assembly" to "respiratory chain complex IV assembly"
* Changed definition of GO:0008535 from "The aggregation and bonding together of a set of components to form cytochrome c oxidase, the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms." to "The aggregation and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase), the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms."
* Added synonym "cytochrome c oxidase complex assembly" to GO:0008535
* Changed synonym scope of GO:0008535 from "Related" to "Exact"
* Deleted synonym "ARF small monomeric GTPase activity" from GO:0016192
* Deleted synonym "RAB small monomeric GTPase activity" from GO:0016192
* Deleted synonym "vesicle-fusing ATPase activity" from GO:0016192
* Deleted GO:0032472 --OBO_REL:is_a--> GO:0006839
* Copied GO:0032472 to GO:0046907 with type OBO_REL:is_a
* Deleted synonym "vesicle-fusing ATPase activity" from GO:0042623
* Changed name of GO:0043461 from "F-type ATPase complex assembly" to "proton-transporting ATP synthase complex assembly"
* Changed definition of GO:0043461 from "The aggregation and bonding together of F-type ATPase, a multi-subunit proton-transporting ATPase found in the inner membrane of mitochondria and chloroplasts, and in bacterial plasma membranes." to "The aggregation and bonding together of a proton-transporting ATP synthase (also known as F-type ATPase), a two-sector ATPase found in the inner membrane of mitochondria and chloroplasts, and in bacterial plasma membranes."
* Added definition dbxref GOC:mah to GO:0043461
* Added synonym "F-type ATPase complex assembly" to GO:0043461
* Changed synonym scope of GO:0043461 from "Related" to "Exact"
* Deleted synonym "terpene synthase activity" from GO:0046246
* Deleted synonym "4-amino-4-deoxychorismate synthase activity" from GO:0046820
* Deleted synonym "follicle-stimulating hormone secretion" from GO:0046879
* Deleted synonym "FSH secretion" from GO:0046879
* Added synonym "FSH secretion" to GO:0046884
* Changed synonym scope of GO:0046884 from "Related" to "Exact"
* Deleted synonym "glucose 1-dehydrogenase (NAD+) activity" from GO:0047934
* Changed definition of GO:0048786 from "A specialized presynaptic plasma membrane region where synaptic vesicles dock and fuse." to "A specialized region of the plasma membrane and cell cortex of a presynaptic neuron; encompasses a region of the plasma membrane where synaptic vesicles dock and fuse, synaptic vesicles, and a specialized cortical cytoskeletal matrix."
* Changed name of GO:0048787 from "active zone presynaptic plasma membrane" to "presynaptic active zone membrane"
* Changed definition of GO:0048787 from "The active zone is a specialized site of the presynaptic plasma membrane where docking and fusion of synaptic vesicles occurs for the release of neurotransmitters." to "The membrane portion of the presynaptic active zone; it is the site where docking and fusion of synaptic vesicles occurs for the release of neurotransmitters."
* Deleted synonym "CAZ plasma membrane" from GO:0048787
* Added synonym "active zone presynaptic plasma membrane" to GO:0048787
* Changed synonym scope of GO:0048787 from "Related" to "Exact"
* Copied GO:0048787 to GO:0048786 with type part_of
* Copied GO:0048788 to GO:0048786 with type part_of
* Deleted synonym "spindle midzone assembly involved in meiosis" from GO:0051257
* Added synonym "spindle midzone biosynthesis involved in meiosis" to GO:0051257
* Changed synonym scope of GO:0051257 from "Related" to "Exact"
* Deleted GO:0051384 --OBO_REL:is_a--> GO:0048545
* Copied GO:0051384 to GO:0031960 with type OBO_REL:is_a
* Deleted GO:0051385 --OBO_REL:is_a--> GO:0048545
* Copied GO:0051385 to GO:0031960 with type OBO_REL:is_a

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