[go-diff] GO update 10/10/2007

Wed Oct 10 21:30:40 PDT 2007

OBODIFF of gene_ontology_edit.obo version 5.497 by 5.500

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010448
* Created object of type obo:TERM with id GO:0010449
* Created object of type obo:TERM with id GO:0010450
* Created object of type obo:TERM with id GO:0010451
* Populated new object GO:0010448 (macro)
  * Changed name of GO:0010448 from "<new term>" to "vegetative meristem growth"
  * Set definition of GO:0010448 to "The increase in size or mass of a vegetative meristem, a population of undifferentiated cells in a plant shoot which maintains a continuous balance between the production of stem cells and the incorporation of their derivatives into lateral organ primordia."
  * Added definition dbxref GOC:tb to GO:0010448
  * Added definition dbxref ISBN:0849397928 to GO:0010448
  * Copied GO:0010448 to GO:0048367 with type part_of
  * Copied GO:0010448 to GO:0035266 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010448
* Populated new object GO:0010449 (macro)
  * Changed name of GO:0010449 from "<new term>" to "root meristem growth"
  * Set definition of GO:0010449 to "The increase in size or mass of a root meristem, a population of undifferentiated cells in a plant root which maintains a continuous balance between the production of stem cells and the incorporation of their derivatives into the growth of the root."
  * Added definition dbxref GOC:tb to GO:0010449
  * Copied GO:0010449 to GO:0035266 with type OBO_REL:is_a
  * Copied GO:0010449 to GO:0048364 with type part_of
  * Assigned namespace "biological_process" to GO:0010449
* Populated new object GO:0010450 (macro)
  * Changed name of GO:0010450 from "<new term>" to "inflorescence meristem growth"
  * Set definition of GO:0010450 to "The increase in size or mass of an inflorescence meristem, a population of undifferentiated cells in a plant shoot which produces small leaves and then floral meristems, which will give rise to flowers."
  * Added definition dbxref GOC:tb to GO:0010450
  * Copied GO:0010450 to GO:0035266 with type OBO_REL:is_a
  * Copied GO:0010450 to GO:0010229 with type part_of
  * Assigned namespace "biological_process" to GO:0010450
* Populated new object GO:0010451 (macro)
  * Changed name of GO:0010451 from "<new term>" to "floral meristem growth"
  * Set definition of GO:0010451 to "The increase in size or mass of a floral meristem, a population of undifferentiated cells in a plant that gives rise to a flower."
  * Added definition dbxref GOC:tb to GO:0010451
  * Copied GO:0010451 to GO:0009908 with type part_of
  * Copied GO:0010451 to GO:0035266 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010451
* Deleted synonym "methionine synthase activity" from GO:0003961
* Deleted synonym "dihydrolipoyl dehydrogenase complex" from GO:0004148
* Deleted synonym "transcription-activating factor, 30kD" from GO:0005669
* Deleted synonym "plasma membrane copper transporter" from GO:0005886
* Changed name of GO:0006990 from "unfolded protein response, positive regulation of target gene transcription" to "positive regulation of transcription of target genes involved in unfolded protein response"
* Added definition dbxref GOC:tb to GO:0006990
* Added synonym "unfolded protein response, positive regulation of target gene transcription" to GO:0006990
* Added general dbxref GOC:tb to synonym unfolded protein response, positive regulation of target gene transcription of GO:0006990
* Changed synonym scope of GO:0006990 from "Related" to "Exact"
* Deleted synonym "amine oxidase activity" from GO:0008131
* Deleted synonym "RAN-binding protein" from GO:0008536
* Added synonym "Ran-binding protein" to GO:0008536
* Deleted synonym "methionine synthetase activity" from GO:0008705
* Changed name of GO:0010058 from "regulation of atrichoblast fate" to "regulation of atrichoblast fate specification"
* Deleted GO:0010058 --OBO_REL:is_a--> GO:0050789
* Copied GO:0010058 to GO:0042659 with type OBO_REL:is_a
* Changed name of GO:0010059 from "positive regulation of atrichoblast fate" to "positive regulation of atrichoblast fate specification"
* Changed name of GO:0010060 from "negative regulation of atrichoblast fate" to "negative regulation of atrichoblast fate specification"
* Changed name of GO:0010061 from "regulation of trichoblast fate" to "regulation of trichoblast fate specification"
* Changed name of GO:0010062 from "negative regulation of trichoblast fate" to "negative regulation of trichoblast fate specification"
* Changed name of GO:0010063 from "positive regulation of trichoblast fate" to "positive regulation of trichoblast fate specification"
* Changed name of GO:0010075 from "regulation of meristem size" to "regulation of meristem growth"
* Deleted synonym "regulation of meristem growth" from GO:0010075
* Added synonym "regulation of meristem size" to GO:0010075
* Added general dbxref GOC:tb to synonym regulation of meristem size of GO:0010075
* Changed synonym scope of GO:0010075 from "Related" to "Exact"
* Changed name of GO:0010080 from "regulation of floral meristem size" to "regulation of floral meristem growth"
* Added synonym "regulation of floral meristem size" to GO:0010080
* Changed synonym scope of GO:0010080 from "Related" to "Exact"
* Copied GO:0010080 to GO:0010451 with type part_of
* Changed name of GO:0010081 from "regulation of inflorescence meristem size" to "regulation of inflorescence meristem growth"
* Added synonym "regulation of inflorescence meristem size" to GO:0010081
* Added general dbxref GOC:tb to synonym regulation of inflorescence meristem size of GO:0010081
* Changed synonym scope of GO:0010081 from "Related" to "Exact"
* Copied GO:0010081 to GO:0010450 with type part_of
* Changed name of GO:0010082 from "regulation of root meristem size" to "regulation of root meristem growth"
* Added synonym "regulation of root meristem size" to GO:0010082
* Added general dbxref GOC:tb to synonym regulation of root meristem size of GO:0010082
* Changed synonym scope of GO:0010082 from "Related" to "Exact"
* Copied GO:0010082 to GO:0010449 with type part_of
* Changed name of GO:0010083 from "regulation of vegetative meristem size" to "regulation of vegetative meristem growth"
* Added synonym "regulation of vegetative meristem size" to GO:0010083
* Added general dbxref GOC:tb to synonym regulation of vegetative meristem size of GO:0010083
* Changed synonym scope of GO:0010083 from "Related" to "Exact"
* Copied GO:0010083 to GO:0010448 with type part_of
* Added synonym "valine/tyrosine/tryptophan permease activity" to GO:0015173
* Changed synonym scope of GO:0015210 from "Narrow" to "Related"
* Changed synonym scope of GO:0015462 from "Related" to "Narrow"
* Added synonym "leucine/valine/isoleucine permease activity" to GO:0015658
* Added synonym "valine/tyrosine/tryptophan permease activity" to GO:0015658
* Deleted synonym "monoterpene biosynthesis" from GO:0016099
* Deleted synonym "monoterpene biosynthetic process" from GO:0016099
* Deleted synonym "X-Pro dipeptidyl-peptidase activity" from GO:0017088
* Deleted synonym "leucine/valine/isoleucine permease activity" from GO:0022857
* Deleted synonym "transporter activity" from GO:0022857
* Deleted synonym "valine/tyrosine/tryptophan permease activity" from GO:0022857
* Deleted synonym "elevation of endoplasmic reticulum calcium ion concentration" from GO:0032470
* Added synonym "elevation of ER calcium ion concentration" to GO:0032470
* Changed synonym scope of GO:0032470 from "Related" to "Exact"
* Deleted synonym "ATP-dependent polydeoxyribonucleotide kinase activity" from GO:0046404
* Changed name of GO:0046596 from "regulation of virion penetration into host" to "regulation of virion penetration into host cell"
* Added definition dbxref GOC:tb to GO:0046596
* Changed name of GO:0046597 from "negative regulation of virion penetration into host" to "negative regulation of virion penetration into host cell"
* Added definition dbxref GOC:tb to GO:0046597
* Changed name of GO:0046598 from "positive regulation of virion penetration into host" to "positive regulation of virion penetration into host cell"
* Added definition dbxref GOC:tb to GO:0046598
* Changed name of GO:0046620 from "regulation of organ size" to "regulation of organ growth"
* Added definition dbxref GOC:tb to GO:0046620
* Deleted synonym "regulation of organ growth" from GO:0046620
* Added synonym "regulation of organ size" to GO:0046620
* Added general dbxref GOC:tb to synonym regulation of organ size of GO:0046620
* Changed synonym scope of GO:0046620 from "Related" to "Exact"
* Changed name of GO:0046621 from "negative regulation of organ size" to "negative regulation of organ growth"
* Added definition dbxref GOC:tb to GO:0046621
* Added synonym "negative regulation of organ size" to GO:0046621
* Added general dbxref GOC:tb to synonym negative regulation of organ size of GO:0046621
* Changed synonym scope of GO:0046621 from "Related" to "Exact"
* Changed name of GO:0046622 from "positive regulation of organ size" to "positive regulation of organ growth"
* Added definition dbxref GOC:tb to GO:0046622
* Added synonym "positive regulation of organ size" to GO:0046622
* Added general dbxref GOC:tb to synonym positive regulation of organ size of GO:0046622
* Changed synonym scope of GO:0046622 from "Related" to "Exact"
* Changed name of GO:0048524 from "positive regulation of viral life cycle" to "positive regulation of viral reproduction"
* Added definition dbxref GOC:tb to GO:0048524
* Added synonym "positive regulation of viral life cycle" to GO:0048524
* Added general dbxref GOC:tb to synonym positive regulation of viral life cycle of GO:0048524
* Changed synonym scope of GO:0048524 from "Related" to "Exact"
* Changed name of GO:0048525 from "negative regulation of viral life cycle" to "negative regulation of viral reproduction"
* Added definition dbxref GOC:tb to GO:0048525
* Added synonym "negative regulation of viral life cycle" to GO:0048525
* Added general dbxref GOC:tb to synonym negative regulation of viral life cycle of GO:0048525
* Changed synonym scope of GO:0048525 from "Related" to "Exact"
* Changed name of GO:0048832 from "regulation of organ number" to "specification of organ number"
* Changed name of GO:0048833 from "regulation of floral organ number" to "specification of floral organ number"
* Changed definition of GO:0048833 from "Any process that modulates the number of petals formed in a flower." to "Any process that modulates the number of floral organs formed in a floral whorl."
* Changed name of GO:0048834 from "regulation of petal number" to "specification of petal number"
* Deleted synonym "ribose 1-dehydrogenase (NADP+) activity" from GO:0050259
* Changed name of GO:0050792 from "regulation of viral life cycle" to "regulation of viral reproduction"
* Added definition dbxref GOC:tb to GO:0050792
* Added synonym "regulation of viral life cycle" to GO:0050792
* Added general dbxref GOC:tb to synonym regulation of viral life cycle of GO:0050792
* Changed synonym scope of GO:0050792 from "Related" to "Exact"
* Deleted synonym "positive regulation of NK T cell proliferation" from GO:0051142
* Changed name of GO:0051436 from "negative regulation of ubiquitin ligase activity during mitotic cell cycle" to "negative regulation of ubiquitin-protein ligase activity during mitotic cell cycle"
* Added definition dbxref GOC:tb to GO:0051436
* Added synonym "negative regulation of ubiquitin ligase activity during mitotic cell cycle" to GO:0051436
* Added general dbxref GOC:tb to synonym negative regulation of ubiquitin ligase activity during mitotic cell cycle of GO:0051436
* Changed synonym scope of GO:0051436 from "Related" to "Exact"
* Changed name of GO:0051437 from "positive regulation of ubiquitin ligase activity during mitotic cell cycle" to "positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle"
* Added definition dbxref GOC:tb to GO:0051437
* Added synonym "positive regulation of ubiquitin ligase activity during mitotic cell cycle" to GO:0051437
* Added general dbxref GOC:tb to synonym positive regulation of ubiquitin ligase activity during mitotic cell cycle of GO:0051437
* Changed synonym scope of GO:0051437 from "Related" to "Exact"
* Changed name of GO:0051438 from "regulation of ubiquitin ligase activity" to "regulation of ubiquitin-protein ligase activity"
* Added definition dbxref GOC:tb to GO:0051438
* Added synonym "regulation of ubiquitin ligase activity" to GO:0051438
* Added general dbxref GOC:tb to synonym regulation of ubiquitin ligase activity of GO:0051438
* Changed synonym scope of GO:0051438 from "Related" to "Exact"
* Changed name of GO:0051439 from "regulation of ubiquitin ligase activity during mitotic cell cycle" to "regulation of ubiquitin-protein ligase activity during mitotic cell cycle"
* Deleted synonym "regulation of ubiquitin-protein ligase activity during mitotic cell cycle" from GO:0051439
* Added synonym "regulation of ubiquitin ligase activity during mitotic cell cycle" to GO:0051439
* Added general dbxref GOC:tb to synonym regulation of ubiquitin ligase activity during mitotic cell cycle of GO:0051439
* Changed synonym scope of GO:0051439 from "Related" to "Exact"
* Changed name of GO:0051440 from "regulation of ubiquitin ligase activity during meiotic cell cycle" to "regulation of ubiquitin-protein ligase activity during meiotic cell cycle"
* Added definition dbxref GOC:tb to GO:0051440
* Deleted synonym "regulation of ubiquitin-protein ligase activity during meiotic cell cycle" from GO:0051440
* Added synonym "regulation of ubiquitin ligase activity during meiotic cell cycle" to GO:0051440
* Added general dbxref GOC:tb to synonym regulation of ubiquitin ligase activity during meiotic cell cycle of GO:0051440
* Changed synonym scope of GO:0051440 from "Related" to "Exact"
* Changed name of GO:0051441 from "positive regulation of ubiquitin ligase activity during meiotic cell cycle" to "positive regulation of ubiquitin-protein ligase activity during meiotic cell cycle"
* Added definition dbxref GOC:tb to GO:0051441
* Added synonym "positive regulation of ubiquitin ligase activity during meiotic cell cycle" to GO:0051441
* Added general dbxref GOC:tb to synonym positive regulation of ubiquitin ligase activity during meiotic cell cycle of GO:0051441
* Changed synonym scope of GO:0051441 from "Related" to "Exact"
* Changed name of GO:0051442 from "negative regulation of ubiquitin ligase activity during meiotic cell cycle" to "negative regulation of ubiquitin-protein ligase activity during meiotic cell cycle"
* Added definition dbxref GOC:tb to GO:0051442
* Added synonym "negative regulation of ubiquitin ligase activity during meiotic cell cycle" to GO:0051442
* Added general dbxref GOC:tb to synonym negative regulation of ubiquitin ligase activity during meiotic cell cycle of GO:0051442
* Changed synonym scope of GO:0051442 from "Related" to "Exact"
* Changed name of GO:0051443 from "positive regulation of ubiquitin ligase activity" to "positive regulation of ubiquitin-protein ligase activity"
* Added definition dbxref GOC:tb to GO:0051443
* Added synonym "positive regulation of ubiquitin ligase activity" to GO:0051443
* Added general dbxref GOC:tb to synonym positive regulation of ubiquitin ligase activity of GO:0051443
* Changed synonym scope of GO:0051443 from "Related" to "Exact"
* Changed name of GO:0051444 from "negative regulation of ubiquitin ligase activity" to "negative regulation of ubiquitin-protein ligase activity"
* Added definition dbxref GOC:tb to GO:0051444
* Added synonym "negative regulation of ubiquitin ligase activity" to GO:0051444
* Added general dbxref GOC:tb to synonym negative regulation of ubiquitin ligase activity of GO:0051444
* Changed synonym scope of GO:0051444 from "Related" to "Exact"
* Deleted synonym "ATP-dependent polynucleotide kinase activity" from GO:0051734
* Deleted synonym "ATP-dependent polynucleotide kinase activity" from GO:0051736