[go-diff] GO update 10/11/2007

Thu Oct 11 21:30:40 PDT 2007

OBODIFF of gene_ontology_edit.obo version 5.500 by 5.505

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0033619
* Created object of type obo:TERM with id GO:0033620
* Created object of type obo:TERM with id GO:0033621
* Created object of type obo:TERM with id GO:0060170
* Created object of type obo:TERM with id GO:0060171
* Created object of type obo:TERM with id GO:0060172
* Populated new object GO:0033619 (macro)
  * Changed name of GO:0033619 from "<new term>" to "membrane protein proteolysis"
  * Set definition of GO:0033619 to "The proteolytic cleavage of a transmembrane protein leading to the release of its intracellular or ecto-domains."
  * Added definition dbxref GOC:pd to GO:0033619
  * Copied GO:0033619 to GO:0006508 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033619
* Populated new object GO:0033620 (macro)
  * Changed name of GO:0033620 from "<new term>" to "Mei2 nuclear dot"
  * Set definition of GO:0033620 to "A nuclear body that forms during meiotic prophase in a fixed position in the horsetail nucleus; contains Mei2 and meiRNA. May play a role in the progression of meiosis I."
  * Added definition dbxref PMID:12808043 to GO:0033620
  * Added synonym "Mei2 dot" to GO:0033620
  * Changed synonym scope of GO:0033620 from "Related" to "Exact"
  * Copied GO:0033620 to GO:0016604 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033620
* Populated new object GO:0033621 (macro)
  * Changed name of GO:0033621 from "<new term>" to "mRNA catabolic process, meiosis-specific transcripts"
  * Added comment "Note that it is speculated that higher eukaryotic YTH-family protein may be involved in similar mechanisms to supress gene regulation during gametogenesis or general silencing."
  * Set definition of GO:0033621 to "The selective degradation of meiosis-specific transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein."
  * Added definition dbxref PMID:16823445 to GO:0033621
  * Added GO:0033621 to category gosubset_prok
  * Added synonym "degradation of meiosis-specific transcripts" to GO:0033621
  * Changed synonym scope of GO:0033621 from "Related" to "Exact"
  * Added synonym "mRNA breakdown, meiosis-specific transcripts" to GO:0033621
  * Changed synonym scope of GO:0033621 from "Related" to "Exact"
  * Added synonym "mRNA catabolism, meiosis-specific transcripts" to GO:0033621
  * Changed synonym scope of GO:0033621 from "Related" to "Exact"
  * Added synonym "mRNA degradation, meiosis-specific transcripts" to GO:0033621
  * Changed synonym scope of GO:0033621 from "Related" to "Exact"
  * Copied GO:0033621 to GO:0006402 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0033621
* Populated new object GO:0060170 (macro)
  * Changed name of GO:0060170 from "<new term>" to "cilium membrane"
  * Set definition of GO:0060170 to "The portion of the plasma membrane surrounding a cilium."
  * Added definition dbxref GOC:dph to GO:0060170
  * Added definition dbxref GOC:rh to GO:0060170
  * Copied GO:0060170 to GO:0044441 with type OBO_REL:is_a
  * Copied GO:0060170 to GO:0031253 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0060170
* Populated new object GO:0060171 (macro)
  * Changed name of GO:0060171 from "<new term>" to "stereocilium membrane"
  * Set definition of GO:0060171 to "The portion of the plasma membrane surrounding a stereocilium."
  * Added definition dbxref GOC:dph to GO:0060171
  * Added definition dbxref GOC:rh to GO:0060171
  * Copied GO:0060171 to GO:0031528 with type OBO_REL:is_a
  * Copied GO:0060171 to GO:0032420 with type part_of
  * Assigned namespace "cellular_component" to GO:0060171
* Populated new object GO:0060172 (macro)
  * Changed name of GO:0060172 from "<new term>" to "astral microtubule depolymerization"
  * Set definition of GO:0060172 to "The removal of tubulin heterodimers from one or both ends of an astral microtubule. An astral microtubule is any of the spindle microtubules that radiate in all directions from the spindle poles and are thought to contribute to the forces that separate the poles and position them in relation to the rest of the cell."
  * Added definition dbxref GOC:dph to GO:0060172
  * Copied GO:0060172 to GO:0030953 with type OBO_REL:is_a
  * Copied GO:0060172 to GO:0007019 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060172
* Deleted synonym "immunoglobulin receptor activity" from GO:0001792
* Deleted synonym "type II hypersensitivity" from GO:0001794
* Deleted synonym "type II hypersensitivity" from GO:0001795
* Deleted synonym "NK T cell proliferation" from GO:0001866
* Deleted synonym "T-helper 1 cell lineage commitment" from GO:0002296
* Added synonym "Th1 cell lineage commitment" to GO:0002296
* Added general dbxref Fundamental Immunology (ISBN:0781735149) to synonym Th1 cell lineage commitment of GO:0002296
* Changed synonym scope of GO:0002296 from "Related" to "Exact"
* Deleted synonym "ubiquitin thiolesterase activity" from GO:0004221
* Deleted synonym "phosphoenolpyruvate carboxykinase activity" from GO:0004611
* Deleted synonym "GPI-anchored membrane-bound receptor" from GO:0004872
* Deleted synonym "peroxisomal membrane transporter" from GO:0005215
* Deleted synonym "glycine receptor-associated protein" from GO:0005515
* Deleted synonym "lysosomal cysteine-type endopeptidase" from GO:0005764
* Deleted synonym "lysosomal protein stabilization" from GO:0005764
* Deleted synonym "endosomal oligosaccharide transporter" from GO:0005768
* Deleted synonym "peroxisomal fatty acyl transporter" from GO:0005777
* Deleted synonym "peroxisomal membrane transporter" from GO:0005777
* Deleted synonym "peroxisome receptor" from GO:0005777
* Deleted synonym "proteoglycan integral to plasma membrane" from GO:0005887
* Deleted GO:0005929 --OBO_REL:is_a--> GO:0043231
* Deleted synonym "loss of asymmetric budding" from GO:0006033
* Deleted GO:0006509 --OBO_REL:is_a--> GO:0006508
* Copied GO:0006509 to GO:0033619 with type OBO_REL:is_a
* Deleted synonym "regulation of cytoskeleton" from GO:0007010
* Changed name of GO:0007027 from "negative regulation of axonemal microtubule depolymerization" to "negative regulation of microtubule depolymerization in axoneme"
* Added definition dbxref GOC:dph to GO:0007027
* Added synonym "negative regulation of axonemal microtubule depolymerization" to GO:0007027
* Added general dbxref GOC:dph to synonym negative regulation of axonemal microtubule depolymerization of GO:0007027
* Deleted synonym "endoplasmic reticulum organization and biogenesis" from GO:0007029
* Added synonym "endoplasmic reticulum organisation and biogenesis" to GO:0007029
* Changed synonym scope of GO:0007029 from "Related" to "Exact"
* Changed name of GO:0007433 from "larval salivary gland determination" to "larval salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0007433
* Added synonym "larval salivary gland determination" to GO:0007433
* Added general dbxref GOC:tb to synonym larval salivary gland determination of GO:0007433
* Changed synonym scope of GO:0007433 from "Related" to "Exact"
* Changed name of GO:0007434 from "adult salivary gland determination" to "adult salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0007434
* Added synonym "larval salivary gland determination" to GO:0007434
* Added general dbxref GOC:tb to synonym larval salivary gland determination of GO:0007434
* Changed synonym scope of GO:0007434 from "Related" to "Exact"
* Deleted synonym "outer membrane exporter porin" from GO:0009279
* Deleted synonym "trichome differentiation" from GO:0010026
* Added synonym "levan metabolic process" to GO:0010145
* Changed synonym scope of GO:0010145 from "Related" to "Exact"
* Added synonym "levan biosynthesis" to GO:0010146
* Changed synonym scope of GO:0010146 from "Related" to "Exact"
* Added synonym "levan biosynthetic process" to GO:0010146
* Changed synonym scope of GO:0010146 from "Related" to "Exact"
* Added synonym "levan catabolic process" to GO:0010147
* Changed synonym scope of GO:0010147 from "Related" to "Exact"
* Added synonym "levan catabolism" to GO:0010147
* Changed synonym scope of GO:0010147 from "Related" to "Exact"
* Deleted synonym "channel activity" from GO:0015267
* Deleted synonym "Secondary carrier-type facilitators" from GO:0015291
* Added synonym "secondary carrier-type facilitators" to GO:0015291
* Changed synonym scope of GO:0015291 from "Related" to "Exact"
* Deleted synonym "sesquiterpene biosynthesis" from GO:0016106
* Deleted synonym "sesquiterpene biosynthetic process" from GO:0016106
* Deleted synonym "GPI-anchored membrane-bound receptor" from GO:0019898
* Deleted synonym "cyanosome" from GO:0030089
* Added definition dbxref GOC:dph to GO:0030832
* Deleted GO:0030832 --OBO_REL:is_a--> GO:0030036
* Copied GO:0030832 to GO:0032956 with type OBO_REL:is_a
* Copied GO:0030832 to GO:0032535 with type OBO_REL:is_a
* Deleted GO:0031293 --OBO_REL:is_a--> GO:0006508
* Copied GO:0031293 to GO:0033619 with type OBO_REL:is_a
* Changed name of GO:0031780 from "adrenocorticotropic hormone receptor binding" to "adrenocorticotropin hormone receptor binding"
* Changed definition of GO:0031780 from "Interacting selectively with an adrenocorticotropic hormone receptor." to "Interacting selectively with an adrenocorticotropin hormone receptor."
* Added definition dbxref GOC:dph to GO:0031780
* Deleted GO:0032098 --OBO_REL:is_a--> GO:0032095
* Copied GO:0032098 to GO:0031667 with type part_of
* Copied GO:0032098 to GO:0065008 with type OBO_REL:is_a
* Deleted GO:0032932 --OBO_REL:is_a--> GO:0030953
* Copied GO:0032932 to GO:0060172 with type part_of
* Deleted synonym "ent-kaurene metabolic process" from GO:0033331
* Deleted synonym "muscle motor activity" from GO:0043292
* Changed name of GO:0045704 from "regulation of salivary gland determination" to "regulation of salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045704
* Added synonym "regulation of salivary gland determination" to GO:0045704
* Added general dbxref GOC:tb to synonym regulation of salivary gland determination of GO:0045704
* Changed synonym scope of GO:0045704 from "Related" to "Exact"
* Changed name of GO:0045705 from "negative regulation of salivary gland determination" to "negative regulation of salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045705
* Added synonym "negative regulation of salivary gland determination" to GO:0045705
* Added general dbxref GOC:tb to synonym negative regulation of salivary gland determination of GO:0045705
* Changed synonym scope of GO:0045705 from "Related" to "Exact"
* Changed name of GO:0045706 from "positive regulation of salivary gland determination" to "positive regulation of salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045706
* Added synonym "positive regulation of salivary gland determination" to GO:0045706
* Added general dbxref GOC:tb to synonym positive regulation of salivary gland determination of GO:0045706
* Changed synonym scope of GO:0045706 from "Related" to "Exact"
* Changed name of GO:0045707 from "regulation of adult salivary gland determination" to "regulation of adult salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045707
* Added synonym "regulation of adult salivary gland determination" to GO:0045707
* Added general dbxref GOC:tb to synonym regulation of adult salivary gland determination of GO:0045707
* Changed synonym scope of GO:0045707 from "Related" to "Exact"
* Changed name of GO:0045708 from "regulation of larval salivary gland determination" to "regulation of larval salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045708
* Added synonym "regulation of larval salivary gland determination" to GO:0045708
* Added general dbxref GOC:tb to synonym regulation of larval salivary gland determination of GO:0045708
* Changed synonym scope of GO:0045708 from "Related" to "Exact"
* Changed name of GO:0045709 from "negative regulation of adult salivary gland determination" to "negative regulation of adult salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045709
* Added synonym "negative regulation of adult salivary gland determination" to GO:0045709
* Added general dbxref GOC:tb to synonym negative regulation of adult salivary gland determination of GO:0045709
* Changed synonym scope of GO:0045709 from "Related" to "Exact"
* Changed name of GO:0045710 from "negative regulation of larval salivary gland determination" to "negative regulation of larval salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045710
* Added synonym "negative regulation of larval salivary gland determination" to GO:0045710
* Added general dbxref GOC:tb to synonym negative regulation of larval salivary gland determination of GO:0045710
* Changed synonym scope of GO:0045710 from "Related" to "Exact"
* Changed name of GO:0045711 from "positive regulation of adult salivary gland determination" to "positive regulation of adult salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045711
* Added synonym "positive regulation of adult salivary gland determination" to GO:0045711
* Added general dbxref GOC:tb to synonym positive regulation of adult salivary gland determination of GO:0045711
* Changed synonym scope of GO:0045711 from "Related" to "Exact"
* Changed name of GO:0045712 from "positive regulation of larval salivary gland determination" to "positive regulation of larval salivary gland boundary specification"
* Added definition dbxref GOC:tb to GO:0045712
* Added synonym "positive regulation of larval salivary gland determination" to GO:0045712
* Added general dbxref GOC:tb to synonym positive regulation of larval salivary gland determination of GO:0045712
* Changed synonym scope of GO:0045712 from "Related" to "Exact"
* Deleted synonym "cyanidin-3-rhamnosylglucoside 5-O-glucosyltransferase activity" from GO:0047214
* Deleted synonym "thiohydroximate beta-D-glucosyltransferase activity" from GO:0047251
* Deleted synonym "(1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity" from GO:0047470
* Deleted synonym "fructose 5-dehydrogenase (NADP+) activity" from GO:0047903
* Deleted synonym "glycine N-choloyltransferase activity" from GO:0047963
* Changed name of GO:0048239 from "negative regulation of telomeric recombination at telomere" to "negative regulation of DNA recombination at telomere"
* Added synonym "negative regulation of telomeric recombination at telomere" to GO:0048239
* Added general dbxref GOC:tb to synonym negative regulation of telomeric recombination at telomere of GO:0048239
* Changed synonym scope of GO:0048239 from "Related" to "Exact"
* Changed name of GO:0048835 from "negative regulation of petal number" to "specification of decreased petal number"
* Deleted synonym "down regulation of petal number" from GO:0048835
* Deleted synonym "down-regulation of petal number" from GO:0048835
* Deleted synonym "downregulation of petal number" from GO:0048835
* Deleted synonym "inhibition of petal number" from GO:0048835
* Changed name of GO:0048836 from "positive regulation of petal number" to "specification of increased petal number"
* Deleted synonym "activation of petal number" from GO:0048836
* Deleted synonym "stimulation of petal number" from GO:0048836
* Deleted synonym "up regulation of petal number" from GO:0048836
* Deleted synonym "up-regulation of petal number" from GO:0048836
* Deleted synonym "upregulation of petal number" from GO:0048836
* Changed name of GO:0050687 from "negative regulation of antiviral response" to "negative regulation of defense response to virus"
* Added synonym "negative regulation of antiviral response" to GO:0050687
* Added general dbxref GOC:dph to synonym negative regulation of antiviral response of GO:0050687
* Changed synonym scope of GO:0050687 from "Related" to "Exact"
* Changed name of GO:0050690 from "regulation of antiviral response by virus" to "regulation of defense response to virus by virus"
* Added definition dbxref GOC:dph to GO:0050690
* Added synonym "regulation of antiviral response by virus" to GO:0050690
* Added general dbxref GOC:dph to synonym regulation of antiviral response by virus of GO:0050690
* Changed synonym scope of GO:0050690 from "Related" to "Exact"
* Changed name of GO:0050691 from "regulation of antiviral response by host" to "regulation of defense response to virus by host"
* Added definition dbxref GOC:dph to GO:0050691
* Added synonym "regulation of antiviral response by host" to GO:0050691
* Added general dbxref GOC:dph to synonym regulation of antiviral response by host of GO:0050691
* Changed name of GO:0050885 from "regulation of balance" to "neuromuscular process controlling balance"
* Added definition dbxref GOC:dph to GO:0050885
* Added synonym "regulation of balance" to GO:0050885
* Deleted GO:0050885 --OBO_REL:is_a--> GO:0050881
* Copied GO:0050885 to GO:0050905 with type OBO_REL:is_a
* Deleted synonym "regulation of NK T cell activation" from GO:0051133
* Changed name of GO:0051459 from "regulation of adrenocorticotropic hormone secretion" to "regulation of adrenocorticotropin hormone secretion"
* Added definition dbxref GOC:dph to GO:0051459
* Added general dbxref XX:<new dbxref> to GO:0051459
* Added synonym "regulation of adrenocorticotropic hormone secreteion" to GO:0051459
* Added general dbxref GOC:dph to synonym regulation of adrenocorticotropic hormone secreteion of GO:0051459
* Changed synonym scope of GO:0051459 from "Related" to "Exact"
* Changed name of GO:0060057 from "apotosis involved in mammary gland involution" to "apoptosis involved in mammary gland involution"
* Changed name of GO:0060128 from "adrenocorticotropic hormone secreting cell differentiation" to "adrenocorticotropin hormone secreting cell differentiation"
* Added synonym "adrenocorticotropic hormone secreting cell differentiation" to GO:0060128
* Added general dbxref GOC:dph to synonym adrenocorticotropic hormone secreting cell differentiation of GO:0060128
* Changed synonym scope of GO:0060128 from "Related" to "Exact"
* Changed name of GO:0060131 from "adrenocorticotropic hormone secreting cell development" to "adrenocorticotropin hormone secreting cell development"
* Added synonym "adrenocorticotropic hormone secreting cell development" to GO:0060131
* Added general dbxref GOC:dph to synonym adrenocorticotropic hormone secreting cell development of GO:0060131
* Changed synonym scope of GO:0060131 from "Related" to "Exact"