[go-diff] GO update 10/18/2007

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_edit.obo version 5.515 by 5.518

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0033675
* Created object of type obo:TERM with id GO:0033676
* Created object of type obo:TERM with id GO:0033677
* Created object of type obo:TERM with id GO:0033678
* Created object of type obo:TERM with id GO:0033679
* Created object of type obo:TERM with id GO:0033680
* Created object of type obo:TERM with id GO:0033681
* Created object of type obo:TERM with id GO:0033682
* Populated new object GO:0033675 (macro)
  * Changed name of GO:0033675 from "<new term>" to "pericanalicular vesicle"
  * Set definition of GO:0033675 to "A membrane-bound vesicle found near the apical, or pericanalicular, membrane of a hepatocyte; contains proteins involved in bile salt transport and other fluid and solute transport processes."
  * Added definition dbxref PMID:15763347 to GO:0033675
  * Added definition dbxref PMID:9790571 to GO:0033675
  * Copied GO:0033675 to GO:0016023 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0033675
* Populated new object GO:0033676 (macro)
  * Changed name of GO:0033676 from "<new term>" to "double-stranded DNA-dependent ATPase activity"
  * Added comment "Consider also annotating to the molecular function term 'ATP binding ; GO:0005524'."
  * Set definition of GO:0033676 to "Catalysis of the reaction: ATP + H2O = ADP + phosphate in the presence of double-stranded DNA; drives another reaction."
  * Added definition dbxref GOC:mah to GO:0033676
  * Added synonym "dsDNA-dependent ATPase activity" to GO:0033676
  * Changed synonym scope of GO:0033676 from "Related" to "Exact"
  * Copied GO:0033676 to GO:0008094 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033676
* Populated new object GO:0033677 (macro)
  * Changed name of GO:0033677 from "<new term>" to "DNA/RNA helicase activity"
  * Added comment "Consider also annotating to the molecular function term 'RNA binding ; GO:0003723'."
  * Set definition of GO:0033677 to "Catalysis of the unwinding of a DNA/RNA duplex, i.e. a double helix in which a strand of DNA pairs with a complementary strand of RNA."
  * Added definition dbxref GOC:mah to GO:0033677
  * Added general dbxref EC:2.7.7.- to GO:0033677
  * Added general dbxref Reactome:7008 to GO:0033677
  * Added GO:0033677 to category gosubset_prok
  * Copied GO:0033677 to GO:0004386 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033677
* Populated new object GO:0033678 (macro)
  * Changed name of GO:0033678 from "<new term>" to "5'-3' DNA/RNA helicase activity"
  * Set definition of GO:0033678 to "Catalysis of the unwinding of a DNA/RNA duplex in the direction 5' to 3'."
  * Added definition dbxref GOC:mah to GO:0033678
  * Added synonym "5' to 3' DNA/RNA helicase activity" to GO:0033678
  * Changed synonym scope of GO:0033678 from "Related" to "Exact"
  * Copied GO:0033678 to GO:0033677 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033678
* Populated new object GO:0033679 (macro)
  * Changed name of GO:0033679 from "<new term>" to "3'-5' DNA/RNA helicase activity"
  * Set definition of GO:0033679 to "Catalysis of the unwinding of a DNA/RNA duplex in the direction 3' to 5'."
  * Added definition dbxref GOC:mah to GO:0033679
  * Added synonym "3' to 5' DNA/RNA helicase activity" to GO:0033679
  * Changed synonym scope of GO:0033679 from "Related" to "Exact"
  * Copied GO:0033679 to GO:0033677 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033679
* Populated new object GO:0033680 (macro)
  * Changed name of GO:0033680 from "<new term>" to "ATP-dependent DNA/RNA helicase activity"
  * Added comment "Consider also annotating to the molecular function term 'ATP binding ; GO:0005524'."
  * Set definition of GO:0033680 to "Catalysis of the reaction: ATP + H2O = ADP + phosphate, driving the unwinding of a DNA/RNA duplex."
  * Added definition dbxref GOC:mah to GO:0033680
  * Added GO:0033680 to category gosubset_prok
  * Copied GO:0033680 to GO:0033677 with type OBO_REL:is_a
  * Copied GO:0033680 to GO:0008094 with type OBO_REL:is_a
  * Copied GO:0033680 to GO:0008026 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033680
* Populated new object GO:0033681 (macro)
  * Changed name of GO:0033681 from "<new term>" to "ATP-dependent 3'-5' DNA/RNA helicase activity"
  * Set definition of GO:0033681 to "Catalysis of the reaction: ATP + H2O = ADP + phosphate, driving the unwinding of a DNA/RNA duplex in the direction 3' to 5'."
  * Added definition dbxref GOC:mah to GO:0033681
  * Added synonym "ATP-dependent 3' to 5' DNA/RNA helicase activity" to GO:0033681
  * Changed synonym scope of GO:0033681 from "Related" to "Exact"
  * Copied GO:0033681 to GO:0033680 with type OBO_REL:is_a
  * Copied GO:0033681 to GO:0033679 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033681
* Populated new object GO:0033682 (macro)
  * Changed name of GO:0033682 from "<new term>" to "ATP-dependent 5'-3' DNA/RNA helicase activity"
  * Set definition of GO:0033682 to "Catalysis of the reaction: ATP + H2O = ADP + phosphate, driving the unwinding of a DNA/RNA duplex in the direction 5' to 3'."
  * Added definition dbxref GOC:mah to GO:0033682
  * Added synonym "ATP-dependent 5' to 3' DNA/RNA helicase activity" to GO:0033682
  * Changed synonym scope of GO:0033682 from "Related" to "Exact"
  * Copied GO:0033682 to GO:0033680 with type OBO_REL:is_a
  * Copied GO:0033682 to GO:0033678 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0033682
* Changed definition of GO:0008094 from "Catalysis of the reaction: ATP + H2O = ADP + phosphate in the presence of double-stranded DNA; drives another reaction." to "Catalysis of the reaction: ATP + H2O = ADP + phosphate in the presence of single- or double-stranded DNA; drives another reaction."
* Copied GO:0032410 to GO:0051051 with type OBO_REL:is_a
* Deleted GO:0033669 --OBO_REL:is_a--> GO:0052150
* Destroyed object GO:0033669
* Added synonym "ssDNA-dependent ATPase activity" to GO:0043142
* Changed synonym scope of GO:0043142 from "Related" to "Exact"
* Changed name of GO:0051342 from "regulation of cyclic nucleotide phosphodiesterase activity" to "regulation of cyclic-nucleotide phosphodiesterase activity"
* Added definition dbxref GOC:tb to GO:0051342
* Added synonym "regulation of cyclic nucleotide phosphodiesterase activity" to GO:0051342
* Added general dbxref GOC:tb to synonym regulation of cyclic nucleotide phosphodiesterase activity of GO:0051342
* Changed synonym scope of GO:0051342 from "Related" to "Exact"
* Changed name of GO:0051343 from "positive regulation of cyclic nucleotide phosphodiesterase activity" to "positive regulation of cyclic-nucleotide phosphodiesterase activity"
* Added definition dbxref GOC:tb to GO:0051343
* Added synonym "positive regulation of cyclic nucleotide phosphodiesterase activity" to GO:0051343
* Added general dbxref GOC:tb to synonym positive regulation of cyclic nucleotide phosphodiesterase activity of GO:0051343
* Changed synonym scope of GO:0051343 from "Related" to "Exact"
* Changed name of GO:0051344 from "negative regulation of cyclic nucleotide phosphodiesterase activity" to "negative regulation of cyclic-nucleotide phosphodiesterase activity"
* Added definition dbxref GOC:tb to GO:0051344
* Added synonym "negative regulation of cyclic nucleotide phosphodiesterase activity" to GO:0051344
* Added general dbxref GOC:tb to synonym negative regulation of cyclic nucleotide phosphodiesterase activity of GO:0051344
* Changed synonym scope of GO:0051344 from "Related" to "Exact"
* added secondary id GO:0033669 to GO:0052151
* Added synonym "positive regulation by symbiont of host apoptosis" to GO:0052151
* Changed synonym scope of GO:0052151 from "Related" to "Exact"
* Added synonym "up regulation by organism of host apoptotic programmed cell death" to GO:0052151
* Changed synonym scope of GO:0052151 from "Related" to "Exact"
* Added synonym "up-regulation by organism of host apoptotic programmed cell death" to GO:0052151
* Changed synonym scope of GO:0052151 from "Related" to "Exact"
* Added synonym "upregulation by organism of host apoptotic programmed cell death" to GO:0052151
* Changed synonym scope of GO:0052151 from "Related" to "Exact"