From gocvs at genome.Stanford.EDU Mon Sep 3 21:30:39 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Mon, 3 Sep 2007 21:30:39 -0700 (PDT) Subject: [go-diff] GO update 09/03/2007 Message-ID: <200709040430.VAA22945@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.469 by 5.470 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Changed name of GO:0006349 from "imprinting" to "genetic imprinting" * Added synonym "calcium transport" to GO:0006816 * Changed synonym scope of GO:0006816 from "Related" to "Exact" * Added synonym "cobalt transport" to GO:0006824 * Changed synonym scope of GO:0006824 from "Related" to "Exact" * Added synonym "mitochondrial calcium transport" to GO:0006851 * Changed synonym scope of GO:0006851 from "Related" to "Exact" * Deleted general dbxref PMID:9680965 from synonym ADP-glucose pyrophosphorylase activity of GO:0008878 * Added synonym "potassium import" to GO:0010107 * Changed synonym scope of GO:0010107 from "Related" to "Exact" * Added synonym "lithium transport" to GO:0010351 * Changed synonym scope of GO:0010351 from "Related" to "Exact" * Added synonym "lithium export" to GO:0010352 * Changed synonym scope of GO:0010352 from "Related" to "Exact" * Added synonym "aluminium transport" to GO:0015690 * Changed synonym scope of GO:0015690 from "Related" to "Exact" * Added synonym "aluminum transport" to GO:0015690 * Changed synonym scope of GO:0015690 from "Related" to "Exact" * Added synonym "cadmium transport" to GO:0015691 * Changed synonym scope of GO:0015691 from "Related" to "Exact" * Added synonym "magnesium transport" to GO:0015693 * Added synonym "mercury transport" to GO:0015694 * Changed synonym scope of GO:0015694 from "Related" to "Exact" * Added synonym "regulation of calcium transport via store-operated calcium channel" to GO:0032234 * Changed synonym scope of GO:0032234 from "Related" to "Exact" * Added synonym "negative regulation of calcium transport via store-operated calcium channel" to GO:0032235 * Changed synonym scope of GO:0032235 from "Related" to "Exact" * Added synonym "positive regulation of calcium transport via store-operated calcium channel" to GO:0032236 * Changed synonym scope of GO:0032236 from "Related" to "Exact" * Added synonym "Golgi calcium transport" to GO:0032472 * Changed synonym scope of GO:0032472 from "Related" to "Exact" * Changed name of GO:0043138 from "3' to 5' DNA helicase activity" to "3'-5' DNA helicase activity" * Added synonym "3' to 5' DNA helicase activity" to GO:0043138 * Changed synonym scope of GO:0043138 from "Related" to "Exact" * Changed name of GO:0043139 from "5' to 3' DNA helicase activity" to "5'-3' DNA helicase activity" * Added synonym "5' to 3' DNA helicase activity" to GO:0043139 * Changed synonym scope of GO:0043139 from "Related" to "Exact" * Changed name of GO:0043140 from "ATP-dependent 3' to 5' DNA helicase activity" to "ATP-dependent 3'-5' DNA helicase activity" * Added synonym "ATP-dependent 3' to 5' DNA helicase activity" to GO:0043140 * Changed synonym scope of GO:0043140 from "Related" to "Exact" * Changed name of GO:0043141 from "ATP-dependent 5' to 3' DNA helicase activity" to "ATP-dependent 5'-3' DNA helicase activity" * Added synonym "ATP-dependent 5' to 3' DNA helicase activity" to GO:0043141 * Changed synonym scope of GO:0043141 from "Related" to "Exact" * Added synonym "mitochondrial iron transport" to GO:0048250 * Changed synonym scope of GO:0048250 from "Related" to "Exact" * Added synonym "regulation of calcium transport" to GO:0051924 * Changed synonym scope of GO:0051924 from "Related" to "Exact" * Added synonym "regulation of calcium transport via voltage-gated calcium channel" to GO:0051925 * Changed synonym scope of GO:0051925 from "Related" to "Exact" * Added synonym "negative regulation of calcium transport" to GO:0051926 * Changed synonym scope of GO:0051926 from "Related" to "Exact" * Added synonym "negative regulation of calcium transport via voltage gated calcium channel" to GO:0051927 * Added synonym "positive regulation of calcium transport" to GO:0051928 * Changed synonym scope of GO:0051928 from "Related" to "Exact" * Added synonym "positive regulation of calcium transport via voltage gated calcium channel" to GO:0051929 * Changed synonym scope of GO:0051929 from "Related" to "Exact" From gocvs at genome.Stanford.EDU Wed Sep 5 21:30:39 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Wed, 5 Sep 2007 21:30:39 -0700 (PDT) Subject: [go-diff] GO update 09/05/2007 Message-ID: <200709060430.VAA25854@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.470 by 5.471 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Deleted synonym "hydrolase activity, acting on acid anhydrides, acting on GTP, involved in cellular and subcellular movement" from GO:0006810 * Deleted general dbxref PMID:9680965 from synonym ADP-glucose pyrophosphorylase activity of GO:0008878 * Deleted GO:0021849 --OBO_REL:is_a--> GO:0055057 * Copied GO:0021849 to GO:0021873 with type OBO_REL:is_a * Changed definition of GO:0021863 from "The process whereby neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of basal progenitor cells, neuroblast that lose their contacts with the ventricular surface. Differentiation includes the processes involved in commitment of a cell to a specific fate." to "The process whereby neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of basal progenitor cells, neuroblasts that lose their contacts with the ventricular surface. Differentiation includes the processes involved in commitment of a cell to a specific fate." * Changed definition of GO:0021873 from "The division of a neuroblast, the neural precursor in the forebrain, giving rise to at least another neuroblast. As in, but not restricted to, the vertebrates (Vertebrata, ncbi_taxonomy_id:7742)." to "The division of a neuroblast located in the forebrain. Neuroblast division gives rise to at least another neuroblast. As in, but not restricted to, the vertebrates (Vertebrata, ncbi_taxonomy_id:7742)." From gocvs at genome.Stanford.EDU Thu Sep 6 21:30:39 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Thu, 6 Sep 2007 21:30:39 -0700 (PDT) Subject: [go-diff] GO update 09/06/2007 Message-ID: <200709070430.VAA09784@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.471 by 5.474 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Created object of type obo:TERM with id GO:0032576 * Created object of type obo:TERM with id GO:0032577 * Populated new object GO:0032576 (macro) * Changed name of GO:0032576 from "" to "O-linoleoyltransferase activity" * Set definition of GO:0032576 to "Catalysis of the transfer of a linoleoyl ((9Z,12Z)-octadeca-9,12-dienoyl) group to an oxygen atom on the acceptor molecule." * Added definition dbxref GOC:cb to GO:0032576 * Copied GO:0032576 to GO:0008374 with type OBO_REL:is_a * Assigned namespace "molecular_function" to GO:0032576 * Populated new object GO:0032577 (macro) * Changed name of GO:0032577 from "" to "phosphatidylcholine:cardiolipin O-linoleoyltransferase" * Set definition of GO:0032577 to "Catalysis of the transfer of a linoleoyl ((9Z,12Z)-octadeca-9,12-dienoyl) group from phosphatidylcholine to an oxygen atom on a cardiolipin molecule." * Added definition dbxref GOC:cb to GO:0032577 * Added definition dbxref GOC:mah to GO:0032577 * Added synonym "phosphatidylcholine:cardiolipin linoleoyltransferase" to GO:0032577 * Changed synonym scope of GO:0032577 from "Related" to "Exact" * Copied GO:0032577 to GO:0032576 with type OBO_REL:is_a * Assigned namespace "molecular_function" to GO:0032577 * Deleted synonym "activation of MAPK (mating sensu Fungi)" from GO:0000750 * Deleted synonym "activation of MAPK (mating sensu Saccharomyces)" from GO:0000750 * Deleted synonym "activation of MAPKK (mating sensu Fungi)" from GO:0000750 * Deleted synonym "activation of MAPKK (mating sensu Saccharomyces)" from GO:0000750 * Deleted synonym "activation of MAPKKK (mating sensu Fungi)" from GO:0000750 * Deleted synonym "activation of MAPKKK (mating sensu Saccharomyces)" from GO:0000750 * Deleted synonym "inactivation of MAPK (mating sensu Fungi)" from GO:0000750 * Deleted synonym "inactivation of MAPK (mating sensu Saccharomyces)" from GO:0000750 * Deleted synonym "nuclear translocation of MAPK (mating sensu Fungi)" from GO:0000750 * Deleted synonym "nuclear translocation of MAPK (mating sensu Saccharomyces)" from GO:0000750 * Deleted synonym "activation of MAPK (pseudohyphal growth)" from GO:0001402 * Deleted synonym "activation of MAPKK (pseudohyphal growth)" from GO:0001402 * Deleted synonym "activation of MAPKKK (pseudohyphal growth)" from GO:0001402 * Deleted synonym "inactivation of MAPK (pseudohyphal growth)" from GO:0001402 * Deleted synonym "nuclear translocation of MAPK (pseudohyphal growth)" from GO:0001402 * Deleted GO:0001560 --part_of--> GO:0009991 * Copied GO:0001560 to GO:0031668 with type part_of * Deleted synonym "NK T cell differentiation" from GO:0001865 * Changed name of GO:0002111 from "BRAC2-BRAF35 complex" to "BRCA2-BRAF35 complex" * Changed definition of GO:0002111 from "A heterodimeric complex of BRACA2 and BRAF35 (BRAC2-associated factor 35). The BRAF35-BRCA2 complex is often associated with condensed chromatin during mitosis." to "A heterodimeric complex of BRCA2 and BRAF35 (BRCA2-associated factor 35). The BRCA2-BRAF35 complex is often associated with condensed chromatin during mitosis." * Deleted synonym "inhibitory C-type lectin receptor signaling pathway" from GO:0002769 * Deleted synonym "farnesyl-diphosphate farnesyl transferase complex" from GO:0004310 * Deleted synonym "farnesyl-diphosphate farnesyltransferase activity" from GO:0004310 * Deleted synonym "phospholipase A2 activity" from GO:0004623 * Deleted synonym "cell adhesion molecule activity" from GO:0005102 * Deleted synonym "selectin" from GO:0005102 * Deleted synonym "colicin" from GO:0005198 * Deleted synonym "pore-forming toxin activity" from GO:0005198 * Deleted synonym "puparial glue (sensu Diptera)" from GO:0005198 * Deleted synonym "yolk protein" from GO:0005198 * Deleted synonym "calcium-dependent cell adhesion molecule activity" from GO:0005515 * Deleted synonym "calcium-independent cell adhesion molecule activity" from GO:0005515 * Deleted synonym "cell adhesion molecule activity" from GO:0005515 * Deleted synonym "receptor-associated protein activity" from GO:0005515 * Deleted synonym "lectin" from GO:0005529 * Deleted synonym "metaxin" from GO:0005741 * Deleted synonym "negative regulation of transcription of homeotic gene (Polycomb group)" from GO:0006342 * Deleted synonym "negative regulation of transcription of homeotic gene (trithorax group)" from GO:0006342 * Deleted synonym "positive regulation of transcription of homeotic gene (Polycomb group)" from GO:0006342 * Deleted synonym "positive regulation of transcription of homeotic gene (trithorax group)" from GO:0006342 * Deleted synonym "regulation of transcription of homeotic gene (Polycomb group)" from GO:0006342 * Deleted synonym "regulation of transcription of homeotic gene (trithorax group)" from GO:0006342 * Changed synonym scope of GO:0006378 from "Related" to "Narrow" * Deleted synonym "selectin" from GO:0007155 * Deleted synonym "galactose binding lectin" from GO:0007157 * Deleted synonym "galectin" from GO:0007157 * Deleted synonym "lectin" from GO:0007157 * Deleted synonym "mannose binding lectin" from GO:0007157 * Deleted synonym "N-acetylgalactosamine lectin" from GO:0007157 * Deleted synonym "blue-sensitive opsin" from GO:0007603 * Deleted synonym "green-sensitive opsin" from GO:0007603 * Deleted synonym "long-wave-sensitive opsin" from GO:0007603 * Deleted synonym "red-sensitive opsin" from GO:0007603 * Deleted synonym "short-wave-sensitive opsin" from GO:0007603 * Deleted synonym "violet-sensitive opsin" from GO:0007603 * Deleted GO:0008137 --OBO_REL:is_a--> GO:0016655 * Deleted synonym "metabolic process" from GO:0008152 * Deleted synonym "vitamin B6 metabolic process" from GO:0008614 * Deleted synonym "vitamin B6 metabolism" from GO:0008614 * Deleted general dbxref PMID:9680965 from synonym ADP-glucose pyrophosphorylase activity of GO:0008878 * Deleted synonym "ice nucleation activity" from GO:0009405 * Deleted GO:0009991 --OBO_REL:is_a--> GO:0007154 * Deleted synonym "L-glutamine transmembrane transporter activity" from GO:0015186 * Deleted synonym "glycine-, glutamate-, thienylcyclohexylpiperidine binding" from GO:0016594 * Deleted synonym "glycine-, glutamate-, thienylcyclohexylpiperidine binding" from GO:0016595 * Deleted synonym "glycine-, glutamate-, thienylcyclohexylpiperidine binding" from GO:0016596 * Deleted synonym "SUMO-dependent protein catabolic process" from GO:0016925 * Deleted synonym "SUMO-dependent protein catabolism" from GO:0016925 * Deleted synonym "SUMO-dependent protein catabolic process" from GO:0016926 * Deleted synonym "SUMO-dependent protein catabolism" from GO:0016926 * Deleted synonym "galectin" from GO:0016936 * Deleted synonym "Rho GTPase binding" from GO:0017048 * Deleted synonym "iron incorporation into iron-sulfur cluster via hexakis-L-cysteinyl hexairon hexasulfide" from GO:0018198 * Deleted synonym "iron incorporation into iron-sulfur cluster via hexakis-L-cysteinyl triiron trisulfide" from GO:0018198 * Deleted synonym "iron incorporation into iron-sulfur cluster via hexakis-L-cysteinyl hexairon hexasulfide" from GO:0018283 * Deleted synonym "iron incorporation into iron-sulfur cluster via hexakis-L-cysteinyl triiron trisulfide" from GO:0018283 * Deleted synonym "carbon phosphorus lyase activity" from GO:0018835 * Deleted synonym "conotoxin activity" from GO:0019855 * Deleted synonym "cell adhesion molecule activity" from GO:0030246 * Deleted synonym "cell adhesion receptor activity" from GO:0030246 * Deleted synonym "3-methylquercitin 7-O-methyltransferase activity" from GO:0030757 * Added synonym "positive regulation of actin polymerization and/or depolymerization" to GO:0030838 * Changed synonym scope of GO:0030838 from "Related" to "Broad" * Deleted synonym "small nuclear RNA" from GO:0031202 * Copied GO:0031668 to GO:0007154 with type OBO_REL:is_a * Deleted GO:0031679 --OBO_REL:is_a--> GO:0016655 * Copied GO:0042262 to GO:0031668 with type OBO_REL:is_a * Deleted synonym "vitamin A biosynthesis" from GO:0042904 * Deleted synonym "vitamin A biosynthetic process" from GO:0042904 * Changed synonym scope of GO:0043190 from "Narrow" to "Related" * Deleted synonym "avoidance of host defenses" from GO:0044413 * Added synonym "avoidance of host defences" to GO:0044413 * Changed synonym scope of GO:0044413 from "Related" to "Exact" * Changed synonym scope of GO:0045098 from "Related" to "Narrow" * Changed synonym scope of GO:0045098 from "Related" to "Narrow" * Changed synonym scope of GO:0045098 from "Related" to "Narrow" * Changed synonym scope of GO:0045098 from "Related" to "Narrow" * Changed synonym scope of GO:0045098 from "Related" to "Narrow" * Deleted synonym "positive regulation of Notch signaling pathway" from GO:0045747 * Added synonym "positive regulation of Notch signalling pathway" to GO:0045747 * Changed synonym scope of GO:0045747 from "Related" to "Exact" * Deleted synonym "1-acylglycerophosphocholine O-acyltransferase activity" from GO:0047184 * Deleted synonym "[citrate-(pro-3S)-lyase] thiolesterase activity" from GO:0047778 * Deleted synonym "negative regulation of transcription of homeotic gene (Polycomb group)" from GO:0048096 * Deleted synonym "negative regulation of transcription of homeotic gene (trithorax group)" from GO:0048096 * Deleted synonym "positive regulation of transcription of homeotic gene (Polycomb group)" from GO:0048096 * Deleted synonym "positive regulation of transcription of homeotic gene (trithorax group)" from GO:0048096 * Deleted synonym "regulation of transcription of homeotic gene (Polycomb group)" from GO:0048096 * Deleted synonym "regulation of transcription of homeotic gene (trithorax group)" from GO:0048096 * Copied GO:0050136 to GO:0016655 with type OBO_REL:is_a * Changed synonym scope of GO:0050488 from "Narrow" to "Related" * Changed synonym scope of GO:0050489 from "Narrow" to "Related" * Deleted synonym "selectin" from GO:0050839 * Deleted definition dbxref GOC:ecd from GO:0051074 * Added definition dbxref GOC:ecd< to GO:0051074 * Deleted synonym "regulation of NK T cell differentiation" from GO:0051136 * Deleted synonym "negative regulation of NK T cell differentiation" from GO:0051137 * Deleted synonym "positive regulation of NK T cell differentiation" from GO:0051138 * Deleted synonym "anaphase promoting complex activation" from GO:0051443 * Deleted synonym "anaphase-promoting complex activation" from GO:0051443 * Deleted synonym "anaphase-promoting complex activation" from GO:0051488 * Added synonym "anaphase promoting complex activation" to GO:0051488 * Changed synonym scope of GO:0051488 from "Related" to "Exact" * Deleted synonym "activation of bipolar cell growth" from GO:0051518 * Deleted synonym "oocyte nucleus localization during oocyte axis determination" from GO:0051663 * Added synonym "oocyte nucleus localisation during oocyte axis determination" to GO:0051663 * Changed synonym scope of GO:0051663 from "Related" to "Exact" * Changed synonym scope of GO:0051693 from "Exact" to "Related" * Changed synonym scope of GO:0051693 from "Exact" to "Related" * Changed name of GO:0052548 from "regulation of protease activity" to "regulation of endopeptidase activity" * Changed definition of GO:0052548 from "Any process that modulates the frequency, rate or extent of nuclease activity, the endohydrolysis of peptide linkages within proteins." to "Any process that modulates the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide linkages within proteins." * Added definition dbxref GOC:hjd to GO:0052548 From gocvs at genome.Stanford.EDU Fri Sep 7 21:30:40 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Fri, 7 Sep 2007 21:30:40 -0700 (PDT) Subject: [go-diff] GO update 09/07/2007 Message-ID: <200709080430.VAA15834@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.474 by 5.475 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Deleted synonym "shmoo" from GO:0001400 * Deleted synonym "endonuclease VIII activity" from GO:0004519 * Deleted synonym "SAP kinase 3 activity" from GO:0004674 * Deleted synonym "SAP kinase 4 activity" from GO:0004674 * Deleted synonym "SAP kinase 5 activity" from GO:0004674 * Deleted synonym "focal adhesion kinase activity" from GO:0004713 * Deleted synonym "SAP kinase 3 activity" from GO:0004871 * Deleted synonym "SAP kinase 4 activity" from GO:0004871 * Deleted synonym "SAP kinase 5 activity" from GO:0004871 * Deleted synonym "colicin" from GO:0005102 * Deleted synonym "tachykinin" from GO:0005102 * Deleted general dbxref PMID:9680965 from synonym ADP-glucose pyrophosphorylase activity of GO:0008878 * Deleted synonym "colicin" from GO:0009405 * Deleted synonym "cytochrome b6f complex" from GO:0009496 * Deleted synonym "antiporter activity" from GO:0015297 * Deleted synonym "colicin" from GO:0019835 * Changed synonym scope of GO:0030613 from "Related" to "Narrow" * Changed synonym scope of GO:0030618 from "Related" to "Narrow" * Changed definition of GO:0042813 from "Combining with a member of the Wnt-family of signaling molecules to initiate a change in cell activity." to "Combining with a member of the Wnt family of signaling molecules to initiate a change in cell activity." * Changed synonym scope of GO:0042813 from "Exact" to "Related" * Changed synonym scope of GO:0042813 from "Exact" to "Related" * Deleted synonym "activation of JAK protein" from GO:0042976 * Deleted synonym "2-aminobenzoate metabolic process" from GO:0043420 * Deleted synonym "2-aminobenzoate metabolism" from GO:0043420 * Deleted synonym "tachykinin" from GO:0045909 * Deleted synonym "tachykinin" from GO:0045987 * Deleted synonym "inositol-1,4,5-trisphosphate 1-phosphatase" from GO:0046030 * Deleted synonym "tachykinin" from GO:0046878 * Deleted synonym "colicin" from GO:0046930 * Deleted synonym "colicin" from GO:0046931 * Changed synonym scope of GO:0046992 from "Related" to "Narrow" * Deleted synonym "CDP-abequose epimerase activity" from GO:0047732 * Deleted synonym "prostaglandin-E2 9-reductase activity" from GO:0050221 * Deleted synonym "colicin" from GO:0050827 From gocvs at genome.Stanford.EDU Mon Sep 10 21:30:39 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Mon, 10 Sep 2007 21:30:39 -0700 (PDT) Subject: [go-diff] GO update 09/10/2007 Message-ID: <200709110430.VAA21473@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.475 by 5.476 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Changed definition of GO:0001932 from "Any process that modulates the frequency, rate or extent of addition of phosphoric groups into an amino acid in a protein." to "Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein." * Changed definition of GO:0001933 from "Any process that stops, prevents or decreases the rate of addition of phosphoric groups to amino acids within a protein." to "Any process that stops, prevents or decreases the rate of addition of phosphate groups to amino acids within a protein." * Changed definition of GO:0001934 from "Any process that activates or increases the frequency, rate or extent of addition of phosphoric groups to amino acids within a protein." to "Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein." * Changed definition of GO:0002030 from "The process that inhibits the signaling function of a G-protein coupled receptor by addition of a phosphoric group to its third intracellular loop consensu thes site." to "The process that inhibits the signaling function of a G-protein coupled receptor by addition of a phosphate group to its third intracellular loop consensu thes site." * Changed name of GO:0004198 from "calpain activity" to "calcium-dependent cysteine-type endopeptidase activity" * Changed definition of GO:0004198 from "Catalysis of the preferential cleavage of Tyr-Xaa, Met-Xaa or Arg-Xaa with Leu or Val as the P2 residue." to "Catalysis of the hydrolysis of nonterminal peptide linkages in oligopeptides or polypeptides by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium." * Deleted definition dbxref EC:3.4.22.17 from GO:0004198 * Added definition dbxref GOC:mah to GO:0004198 * Deleted general dbxref EC:3.4.22.17 from GO:0004198 * Deleted general dbxref MetaCyc:3.4.22.17-RXN from GO:0004198 * Added synonym "calpain activity" to GO:0004198 * Changed synonym scope of GO:0004198 from "Related" to "Narrow" * Deleted definition dbxref EC:2.7.1.117 from GO:0004687 * Added definition dbxref EC:2.7.11.18 to GO:0004687 * Deleted general dbxref EC:2.7.1.117 from GO:0004687 * Added general dbxref EC:2.7.11.18 to GO:0004687 * Deleted definition dbxref EC:2.7.1.112 from GO:0004713 * Added definition dbxref EC:2.7.10 to GO:0004713 * Deleted general dbxref EC:2.7.1.112 from GO:0004713 * Added general dbxref EC:2.7.10 to GO:0004713 * Deleted general dbxref EC:2.7.1.- from GO:0004714 * Added general dbxref EC:2.7.10.1 to GO:0004714 * Deleted general dbxref EC:2.7.1.- from GO:0004715 * Added general dbxref EC:2.7.10.2 to GO:0004715 * Changed definition of GO:0006009 from "The process of introducing a phosphoric group into glucose 1-phosphate to produce glucose bisphosphate." to "The process of introducing a phosphate group into glucose 1-phosphate to produce glucose bisphosphate." * Changed definition of GO:0006019 from "The process of introducing a phosphoric group into deoxyribose 5-phosphate to produce deoxyribose bisphosphate." to "The process of introducing a phosphate group into deoxyribose 5-phosphate to produce deoxyribose bisphosphate." * Changed definition of GO:0006165 from "The process of introducing a phosphoric group into a nucleoside diphosphate to produce a nucleoside triphosphate." to "The process of introducing a phosphate group into a nucleoside diphosphate to produce a nucleoside triphosphate." * Changed definition of GO:0006174 from "The process of introducing a phosphoric group into dADP, deoxyadenosine diphosphate, to produce dATP." to "The process of introducing a phosphate group into dADP, deoxyadenosine diphosphate, to produce dATP." * Changed definition of GO:0006186 from "The process of introducing a phosphoric group into dGDP, deoxyguanosine diphosphate, to produce dGTP." to "The process of introducing a phosphate group into dGDP, deoxyguanosine diphosphate, to produce dGTP." * Changed definition of GO:0006192 from "The process of introducing a phosphoric group into IDP, inosine (5'-)diphosphate, to produce ITP." to "The process of introducing a phosphate group into IDP, inosine (5'-)diphosphate, to produce ITP." * Changed definition of GO:0006194 from "The process of introducing a phosphoric group into dIDP, deoxyinosine diphosphate, to produce dITP." to "The process of introducing a phosphate group into dIDP, deoxyinosine diphosphate, to produce dITP." * Changed definition of GO:0006468 from "The process of introducing a phosphoric group on to a protein." to "The process of introducing a phosphate group on to a protein." * Changed definition of GO:0006756 from "The process of introducing a phosphoric group into AMP, adenosine monophosphate, to produce ADP. Addition of two phosphoric groups produces ATP." to "The process of introducing a phosphate group into AMP, adenosine monophosphate, to produce ADP. Addition of two phosphate groups produces ATP." * Changed definition of GO:0006757 from "The process of introducing a phosphoric group into ADP, adenosine diphosphate, to produce ATP." to "The process of introducing a phosphate group into ADP, adenosine diphosphate, to produce ATP." * Changed definition of GO:0007252 from "The process of introducing a phosphoric group into an I-kappaB protein." to "The process of introducing a phosphate group into an I-kappaB protein." * Changed definition of GO:0007258 from "The process of introducing a phosphoric group into a JUN protein." to "The process of introducing a phosphate group into a JUN protein." * Changed definition of GO:0007260 from "The process of introducing a phosphoric group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein." to "The process of introducing a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein." * Deleted definition dbxref EC:2.7.1.141 from GO:0008353 * Added definition dbxref EC:2.7.11.23 to GO:0008353 * Deleted general dbxref EC:2.7.1.141 from GO:0008353 * Added general dbxref EC:2.7.11.23 to GO:0008353 * Deleted general dbxref PMID:9680965 from synonym ADP-glucose pyrophosphorylase activity of GO:0008878 * Changed definition of GO:0016310 from "The process of introducing a phosphoric group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide." to "The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide." * Changed definition of GO:0016462 from "Catalysis of the hydrolysis of a pyrophosphate bond between two phosphoric groups, leaving one phosphate on each of the two fragments." to "Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments." * Changed definition of GO:0016572 from "The modification of histones by addition of phosphoric groups." to "The modification of histones by addition of phosphate groups." * Changed definition of GO:0016576 from "The modification of histones by removal of phosphoric groups." to "The modification of histones by removal of phosphate groups." * Changed definition of GO:0031388 from "The process of introducing one or more phosphoric groups into an organic acid." to "The process of introducing one or more phosphate groups into an organic acid." * Changed definition of GO:0033136 from "The process of introducing a phosphoric group to a serine residue of the STAT3 protein." to "The process of introducing a phosphate group to a serine residue of the STAT3 protein." * Changed definition of GO:0035303 from "Any process that modulates the frequency, rate or extent of removal of phosphoric groups from a molecule." to "Any process that modulates the frequency, rate or extent of removal of phosphate groups from a molecule." * Changed definition of GO:0035304 from "Any process that modulates the frequency, rate or extent of removal of phosphoric groups from a protein." to "Any process that modulates the frequency, rate or extent of removal of phosphate groups from a protein." * Changed definition of GO:0035305 from "Any process the stops, prevents or reduces the frequency, rate or extent of removal of phosphoric groups from a molecule." to "Any process the stops, prevents or reduces the frequency, rate or extent of removal of phosphate groups from a molecule." * Changed definition of GO:0035306 from "Any process that activates or increases the frequency, rate or extent of removal of phosphoric groups from a molecule." to "Any process that activates or increases the frequency, rate or extent of removal of phosphate groups from a molecule." * Changed definition of GO:0035307 from "Any process that activates or increases the frequency, rate or extent of removal of phosphoric groups from a protein." to "Any process that activates or increases the frequency, rate or extent of removal of phosphate groups from a protein." * Changed definition of GO:0035308 from "Any process the stops, prevents or reduces the frequency, rate or extent of removal of phosphoric groups from a protein." to "Any process the stops, prevents or reduces the frequency, rate or extent of removal of phosphate groups from a protein." * Changed definition of GO:0042325 from "Any process that modulates the frequency, rate or extent of addition of phosphoric groups into a molecule." to "Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule." * Changed definition of GO:0042326 from "Any process that stops, prevents or decreases the rate of addition of phosphoric groups to a molecule." to "Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule." * Changed definition of GO:0042327 from "Any process that activates or increases the frequency, rate or extent of addition of phosphoric groups to a molecule." to "Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule." * Changed definition of GO:0042370 from "The removal of one or more phosphoric groups from thiamin diphosphate, a derivative of thiamin (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle." to "The removal of one or more phosphate groups from thiamin diphosphate, a derivative of thiamin (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle." * Changed definition of GO:0042501 from "The process of introducing a phosphoric group to a serine residue of a STAT (Signal Transducer and Activator of Transcription) protein." to "The process of introducing a phosphate group to a serine residue of a STAT (Signal Transducer and Activator of Transcription) protein." * Changed definition of GO:0042502 from "The process of introducing a phosphoric group to a tyrosine residue of a Stat2 protein." to "The process of introducing a phosphate group to a tyrosine residue of a Stat2 protein." * Changed definition of GO:0042503 from "The process of introducing a phosphoric group to a tyrosine residue of a Stat3 protein." to "The process of introducing a phosphate group to a tyrosine residue of a Stat3 protein." * Changed definition of GO:0042504 from "The process of introducing a phosphoric group to a tyrosine residue of a Stat4 protein." to "The process of introducing a phosphate group to a tyrosine residue of a Stat4 protein." * Changed definition of GO:0042505 from "The process of introducing a phosphoric group to a tyrosine residue of a Stat6 protein." to "The process of introducing a phosphate group to a tyrosine residue of a Stat6 protein." * Changed definition of GO:0042506 from "The process of introducing a phosphoric group to a tyrosine residue of a Stat5 protein." to "The process of introducing a phosphate group to a tyrosine residue of a Stat5 protein." * Changed definition of GO:0042507 from "The process of introducing a phosphoric group to a tyrosine residue of a Stat7 protein." to "The process of introducing a phosphate group to a tyrosine residue of a Stat7 protein." * Changed definition of GO:0042508 from "The process of introducing a phosphoric group to a tyrosine residue of a Stat1 protein." to "The process of introducing a phosphate group to a tyrosine residue of a Stat1 protein." * Changed definition of GO:0042509 from "Any process that modulates the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein." to "Any process that modulates the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein." * Changed definition of GO:0042510 from "Any process that modulates the frequency, rate or extent of introducing a phosphoric group to a tyrosine residue of a Stat1 protein." to "Any process that modulates the frequency, rate or extent of introducing a phosphate group to a tyrosine residue of a Stat1 protein." * Changed definition of GO:0042511 from "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat1 protein." to "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat1 protein." * Changed definition of GO:0042512 from "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat1 protein." to "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat1 protein." * Changed definition of GO:0042513 from "Any process that modulates the frequency, rate or extent of introducing a phosphoric group to a tyrosine residue of a Stat2 protein." to "Any process that modulates the frequency, rate or extent of introducing a phosphate group to a tyrosine residue of a Stat2 protein." * Changed definition of GO:0042514 from "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat2 protein." to "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat2 protein." * Changed definition of GO:0042515 from "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat2 protein." to "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat2 protein." * Changed definition of GO:0042516 from "Any process that modulates the frequency, rate or extent of introducing a phosphoric group to a tyrosine residue of a Stat3 protein." to "Any process that modulates the frequency, rate or extent of introducing a phosphate group to a tyrosine residue of a Stat3 protein." * Changed definition of GO:0042517 from "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat3 protein." to "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat3 protein." * Changed definition of GO:0042518 from "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat3 protein." to "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat3 protein." * Changed definition of GO:0042519 from "Any process that modulates the frequency, rate or extent of introducing a phosphoric group to a tyrosine residue of a Stat4 protein." to "Any process that modulates the frequency, rate or extent of introducing a phosphate group to a tyrosine residue of a Stat4 protein." * Changed definition of GO:0042520 from "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat4 protein." to "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat4 protein." * Changed definition of GO:0042521 from "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat4 protein." to "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat4 protein." * Changed definition of GO:0042522 from "Any process that modulates the frequency, rate or extent of introducing a phosphoric group to a tyrosine residue of a Stat5 protein." to "Any process that modulates the frequency, rate or extent of introducing a phosphate group to a tyrosine residue of a Stat5 protein." * Changed definition of GO:0042523 from "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat5 protein." to "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat5 protein." * Changed definition of GO:0042524 from "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat5 protein." to "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat5 protein." * Changed definition of GO:0042525 from "Any process that modulates the frequency, rate or extent of introducing a phosphoric group to a tyrosine residue of a Stat6 protein." to "Any process that modulates the frequency, rate or extent of introducing a phosphate group to a tyrosine residue of a Stat6 protein." * Changed definition of GO:0042526 from "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat6 protein." to "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat6 protein." * Changed definition of GO:0042527 from "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat6 protein." to "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat6 protein." * Changed definition of GO:0042528 from "Any process that modulates the frequency, rate or extent of introducing a phosphoric group to a tyrosine residue of a Stat7 protein." to "Any process that modulates the frequency, rate or extent of introducing a phosphate group to a tyrosine residue of a Stat7 protein." * Changed definition of GO:0042529 from "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat7 protein." to "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat7 protein." * Changed definition of GO:0042530 from "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat7 protein." to "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat7 protein." * Changed definition of GO:0042531 from "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein." to "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein." * Changed definition of GO:0042532 from "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein." to "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein." * Changed definition of GO:0042801 from "Catalysis of the addition of a phosphoric group onto a serine or threonine residue in any member of the polo kinase class of proteins." to "Catalysis of the addition of a phosphate group onto a serine or threonine residue in any member of the polo kinase class of proteins." * Deleted GO:0042936 --OBO_REL:is_a--> GO:0015197 * Copied GO:0042936 to GO:0015198 with type OBO_REL:is_a * Deleted GO:0042937 --OBO_REL:is_a--> GO:0015197 * Copied GO:0042937 to GO:0015198 with type OBO_REL:is_a * Deleted GO:0042938 --OBO_REL:is_a--> GO:0015833 * Copied GO:0042938 to GO:0006857 with type OBO_REL:is_a * Deleted GO:0042939 --OBO_REL:is_a--> GO:0015833 * Copied GO:0042939 to GO:0006857 with type OBO_REL:is_a * Changed definition of GO:0042976 from "The process of introducing a phosphoric group to a tyrosine residue of a JAK (Janus Activated Kinase) protein, thereby activating it." to "The process of introducing a phosphate group to a tyrosine residue of a JAK (Janus Activated Kinase) protein, thereby activating it." * Changed definition of GO:0042977 from "The process of introducing a phosphoric group to a tyrosine residue of a JAK2 (Janus Activated Kinase 2) protein, thereby activating it." to "The process of introducing a phosphate group to a tyrosine residue of a JAK2 (Janus Activated Kinase 2) protein, thereby activating it." * Changed definition of GO:0046834 from "The process of introducing one or more phosphoric groups into a lipid, any member of a group of substances soluble in lipid solvents but only sparingly soluble in aqueous solvents." to "The process of introducing one or more phosphate groups into a lipid, any member of a group of substances soluble in lipid solvents but only sparingly soluble in aqueous solvents." * Changed definition of GO:0046835 from "The process of introducing a phosphoric group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y." to "The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y." * Changed definition of GO:0046838 from "The process of removing a phosphoric group from a phosphorylated carbohydrate, any organic compound based on the general formula Cx(H2O)y with a phosphate moiety attached to it." to "The process of removing a phosphate group from a phosphorylated carbohydrate, any organic compound based on the general formula Cx(H2O)y with a phosphate moiety attached to it." * Changed definition of GO:0046839 from "The process of removing one or more phosphoric groups from a phosphorylated lipid, any member of a group of substances soluble in lipid solvents but only sparingly soluble in aqueous solvents." to "The process of removing one or more phosphate groups from a phosphorylated lipid, any member of a group of substances soluble in lipid solvents but only sparingly soluble in aqueous solvents." * Changed definition of GO:0046853 from "The process of introducing a phosphoric group into inositol or an inositol derivative. Inositol is the cyclic alcohol 1,2,3,4,5,6-cyclohexanehexol, which is widely distributed in nature and acts as a growth factor in animals and microorganisms." to "The process of introducing a phosphate group into inositol or an inositol derivative. Inositol is the cyclic alcohol 1,2,3,4,5,6-cyclohexanehexol, which is widely distributed in nature and acts as a growth factor in animals and microorganisms." * Changed definition of GO:0046854 from "The process of introducing one or more phosphoric groups into a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives." to "The process of introducing one or more phosphate groups into a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives." * Changed definition of GO:0046855 from "The process of removing a phosphoric group from any mono- or polyphosphorylated inositol." to "The process of removing a phosphate group from any mono- or polyphosphorylated inositol." * Changed definition of GO:0046856 from "The process of removing one or more phosphoric groups from a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives." to "The process of removing one or more phosphate groups from a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives." * Changed definition of GO:0046939 from "The process of introducing one or more phosphoric groups into a nucleotide to produce a phosphorylated nucleoside." to "The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside." * Changed definition of GO:0046940 from "The process of introducing one or more phosphoric groups into a nucleoside monophosphate to produce a polyphosphorylated nucleoside." to "The process of introducing one or more phosphate groups into a nucleoside monophosphate to produce a polyphosphorylated nucleoside." From gocvs at genome.Stanford.EDU Tue Sep 11 21:30:40 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Tue, 11 Sep 2007 21:30:40 -0700 (PDT) Subject: [go-diff] GO update 09/11/2007 Message-ID: <200709120430.VAA03010@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.476 by 5.477 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Added comment "Note that triphosphate is used as a phosphate donor by at least one kinase." * Changed definition of GO:0004672 from "Catalysis of the transfer of a phosphate group, usually from ATP, to a protein substrate." to "Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP." * Deleted definition dbxref GOC:jl from GO:0004672 * Added definition dbxref MetaCyc:PROTEIN-KINASE-RXN to GO:0004672 * Deleted general dbxref EC:2.7.1.37 from GO:0004672 * Deleted definition dbxref EC:2.7.3.11 from GO:0004673 * Deleted definition dbxref EC:2.7.3.12 from GO:0004673 * Added definition dbxref EC:2.7.13.3 to GO:0004673 * Deleted general dbxref EC:2.7.3.- from GO:0004673 * Added general dbxref EC:2.7.13.3 to GO:0004673 * Added synonym "EnvZ" to GO:0004673 * Added general dbxref EC:2.7.13.3 to synonym EnvZ of GO:0004673 * Changed synonym scope of GO:0004673 from "Related" to "Narrow" * Added synonym "histidine kinase (ambiguous)" to GO:0004673 * Added general dbxref EC:2.7.13.3 to synonym histidine kinase (ambiguous) of GO:0004673 * Changed synonym scope of GO:0004673 from "Related" to "Exact" * Added synonym "histidine protein kinase (ambiguous)" to GO:0004673 * Added general dbxref EC:2.7.13.3 to synonym histidine protein kinase (ambiguous) of GO:0004673 * Changed synonym scope of GO:0004673 from "Related" to "Exact" * Added synonym "HK1" to GO:0004673 * Added general dbxref EC:2.7.13.3 to synonym HK1 of GO:0004673 * Added synonym "HP165" to GO:0004673 * Added general dbxref EC:2.7.13.3 to synonym HP165 of GO:0004673 * Added synonym "protein histidine kinase (ambiguous)" to GO:0004673 * Added general dbxref EC:2.7.13.3 to synonym protein histidine kinase (ambiguous) of GO:0004673 * Changed synonym scope of GO:0004673 from "Related" to "Exact" * Added synonym "protein kinase (histidine) (ambiguous)" to GO:0004673 * Added general dbxref EC:2.7.13.3 to synonym protein kinase (histidine) (ambiguous) of GO:0004673 * Changed synonym scope of GO:0004673 from "Related" to "Exact" * Added synonym "Sln1p" to GO:0004673 * Added general dbxref EC:2.7.13.3 to synonym Sln1p of GO:0004673 * Changed synonym scope of GO:0004673 from "Related" to "Narrow" * Added general dbxref EC:2.7.11 to GO:0004674 * Added synonym "A-kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym A-kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "AP50 kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym AP50 kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "ATP-protein transphosphorylase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym ATP-protein transphosphorylase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "ATP:protein phosphotransferase (non-specific) activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym ATP:protein phosphotransferase (non-specific) activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "betaIIPKC" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym betaIIPKC of GO:0004674 * Added synonym "calcium-dependent protein kinase C activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym calcium-dependent protein kinase C activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Broad" * Added synonym "calcium/phospholipid-dependent protein kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym calcium/phospholipid-dependent protein kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "cAMP-dependent protein kinase A activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym cAMP-dependent protein kinase A activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "casein kinase (phosphorylating) activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym casein kinase (phosphorylating) activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "cGMP-dependent protein kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym cGMP-dependent protein kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Broad" * Added synonym "CK-2" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym CK-2 of GO:0004674 * Added synonym "CKI" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym CKI of GO:0004674 * Added synonym "CKII" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym CKII of GO:0004674 * Added synonym "cytidine 3',5'-cyclic monophosphate-responsive protein kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym cytidine 3',5'-cyclic monophosphate-responsive protein kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "dsk1" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym dsk1 of GO:0004674 * Added synonym "epsilon PKC" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym epsilon PKC of GO:0004674 * Added synonym "glycogen synthase a kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym glycogen synthase a kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "glycogen synthase A kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym glycogen synthase A kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "glycogen synthase kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym glycogen synthase kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "HIPK2" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym HIPK2 of GO:0004674 * Added synonym "Hpr kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym Hpr kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "hydroxyalkyl-protein kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym hydroxyalkyl-protein kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "M phase-specific cdc2 kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym M phase-specific cdc2 kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "MAPK" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym MAPK of GO:0004674 * Added synonym "mitogen-activated protein kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym mitogen-activated protein kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Broad" * Added synonym "mitogen-activated S6 kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym mitogen-activated S6 kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "non-specific serine/threonine protein kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym non-specific serine/threonine protein kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "p82 kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym p82 kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "phosphorylase b kinase kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym phosphorylase b kinase kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Broad" * Added synonym "phosphorylase B kinase kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym phosphorylase B kinase kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "PKA" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym PKA of GO:0004674 * Added synonym "PKC" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym PKC of GO:0004674 * Added synonym "protein glutamyl kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym protein glutamyl kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "protein kinase (phosphorylating) activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym protein kinase (phosphorylating) activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "protein kinase A activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym protein kinase A activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Broad" * Added synonym "protein kinase p58 activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym protein kinase p58 activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "protein phosphokinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym protein phosphokinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "protein serine kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym protein serine kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "protein serine-threonine kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym protein serine-threonine kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Exact" * Added synonym "protein-aspartyl kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym protein-aspartyl kinase activity of GO:0004674 * Added synonym "protein-cysteine kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym protein-cysteine kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "protein-serine kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym protein-serine kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "Prp4 protein kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym Prp4 protein kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "Raf kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym Raf kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "Raf-1" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym Raf-1 of GO:0004674 * Added synonym "ribosomal protein S6 kinase II activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym ribosomal protein S6 kinase II activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "ribosomal S6 protein kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym ribosomal S6 protein kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "serine kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym serine kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "serine protein kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym serine protein kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "serine(threonine) protein kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym serine(threonine) protein kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Exact" * Added synonym "serine-specific protein kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym serine-specific protein kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "serine/threonine protein kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym serine/threonine protein kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Exact" * Added synonym "STK32" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym STK32 of GO:0004674 * Added synonym "T-antigen kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym T-antigen kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "threonine-specific protein kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym threonine-specific protein kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "twitchin kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym twitchin kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "Wee 1-like kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym Wee 1-like kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "Wee-kinase activity" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym Wee-kinase activity of GO:0004674 * Changed synonym scope of GO:0004674 from "Related" to "Narrow" * Added synonym "WEE1Hu" to GO:0004674 * Added general dbxref EC:2.7.11.1 to synonym WEE1Hu of GO:0004674 * Added synonym "ATP:protein phosphotransferase (MAPKKK-activated) activity" to GO:0004708 * Added general dbxref EC:2.7.12.2 to synonym ATP:protein phosphotransferase (MAPKKK-activated) activity of GO:0004708 * Changed synonym scope of GO:0004708 from "Related" to "Exact" * Added synonym "MAP kinase kinase 4 activity" to GO:0004708 * Added general dbxref EC:2.7.12.2 to synonym MAP kinase kinase 4 activity of GO:0004708 * Changed synonym scope of GO:0004708 from "Related" to "Narrow" * Added synonym "MAP kinase kinase 7 activity" to GO:0004708 * Added general dbxref EC:2.7.12.2 to synonym MAP kinase kinase 7 activity of GO:0004708 * Changed synonym scope of GO:0004708 from "Related" to "Narrow" * Added synonym "MAP kinase or ERK kinase activity" to GO:0004708 * Added general dbxref EC:2.7.12.2 to synonym MAP kinase or ERK kinase activity of GO:0004708 * Added synonym "MAP2K" to GO:0004708 * Added general dbxref EC:2.7.12.2 to synonym MAP2K of GO:0004708 * Added synonym "MAPKK" to GO:0004708 * Added general dbxref EC:2.7.12.2 to synonym MAPKK of GO:0004708 * Added synonym "MAPKK1" to GO:0004708 * Added general dbxref EC:2.7.12.2 to synonym MAPKK1 of GO:0004708 * Added synonym "MEK1" to GO:0004708 * Added general dbxref EC:2.7.12.2 to synonym MEK1 of GO:0004708 * Added synonym "MEK2" to GO:0004708 * Added general dbxref EC:2.7.12.2 to synonym MEK2 of GO:0004708 * Added synonym "mitogen-activated protein kinase kinase activity" to GO:0004708 * Added general dbxref EC:2.7.12.2 to synonym mitogen-activated protein kinase kinase activity of GO:0004708 * Changed synonym scope of GO:0004708 from "Related" to "Exact" * Added synonym "MKK" to GO:0004708 * Added general dbxref EC:2.7.12.2 to synonym MKK of GO:0004708 * Added synonym "MKK2" to GO:0004708 * Added general dbxref EC:2.7.12.2 to synonym MKK2 of GO:0004708 * Added synonym "MKK4" to GO:0004708 * Added general dbxref EC:2.7.12.2 to synonym MKK4 of GO:0004708 * Added synonym "MKK6" to GO:0004708 * Added general dbxref EC:2.7.12.2 to synonym MKK6 of GO:0004708 * Added synonym "MKK7" to GO:0004708 * Added general dbxref EC:2.7.12.2 to synonym MKK7 of GO:0004708 * Added synonym "STK27" to GO:0004708 * Added general dbxref EC:2.7.12.2 to synonym STK27 of GO:0004708 * Changed name of GO:0004712 from "protein threonine/tyrosine kinase activity" to "protein serine/threonine/tyrosine kinase activity" * Changed definition of GO:0004712 from "Catalysis of the reaction: ATP + a protein threonine/tyrosine = ADP + protein threonine/tyrosine phosphate." to "Catalysis of the reaction: ATP + a protein serine/threonine/tyrosine = ADP + protein serine/threonine/tyrosine phosphate." * Deleted general dbxref EC:2.7.1.- from GO:0004712 * Added general dbxref EC:2.7.112.1 to GO:0004712 * Added synonym "ADK1" to GO:0004712 * Added general dbxref EC:2.7.12.1 to synonym ADK1 of GO:0004712 * Added synonym "Arabidopsis dual specificity kinase 1 activity" to GO:0004712 * Added general dbxref EC:2.7.12.1 to synonym Arabidopsis dual specificity kinase 1 activity of GO:0004712 * Changed synonym scope of GO:0004712 from "Related" to "Narrow" * Added synonym "CLK1" to GO:0004712 * Added general dbxref EC:2.7.12.1 to synonym CLK1 of GO:0004712 * Added synonym "dDYRK2" to GO:0004712 * Added general dbxref EC:2.7.12.1 to synonym dDYRK2 of GO:0004712 * Added synonym "dual-specificity kinase activity" to GO:0004712 * Added general dbxref EC:2.7.12.1 to synonym dual-specificity kinase activity of GO:0004712 * Changed synonym scope of GO:0004712 from "Related" to "Broad" * Added synonym "Mps1p" to GO:0004712 * Added general dbxref EC:2.7.12.1 to synonym Mps1p of GO:0004712 * Added synonym "protein threonine/tyrosine kinase activity" to GO:0004712 * Changed synonym scope of GO:0004712 from "Related" to "Narrow" * Set definition of GO:0004714 to "Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate, to initiate a change in cell activity." * Added definition dbxref EC:2.7.10.1 to GO:0004714 * Added definition dbxref GOC:mah to GO:0004714 * Added synonym "AATK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym AATK of GO:0004714 * Added synonym "AATYK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym AATYK of GO:0004714 * Added synonym "AATYK2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym AATYK2 of GO:0004714 * Added synonym "AATYK3" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym AATYK3 of GO:0004714 * Added synonym "ACH" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym ACH of GO:0004714 * Added synonym "ALK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym ALK of GO:0004714 * Added synonym "anaplastic lymphoma kinase activity" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym anaplastic lymphoma kinase activity of GO:0004714 * Changed synonym scope of GO:0004714 from "Related" to "Narrow" * Added synonym "ARK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym ARK of GO:0004714 * Added synonym "ATP:protein-L-tyrosine O-phosphotransferase (receptor-type) activity" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym ATP:protein-L-tyrosine O-phosphotransferase (receptor-type) activity of GO:0004714 * Changed synonym scope of GO:0004714 from "Related" to "Exact" * Added synonym "ATP:protein-tyrosine O-phosphotransferase activity" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym ATP:protein-tyrosine O-phosphotransferase activity of GO:0004714 * Changed synonym scope of GO:0004714 from "Related" to "Broad" * Added synonym "AXL" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym AXL of GO:0004714 * Added synonym "Bek" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Bek of GO:0004714 * Added synonym "bfgfr" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym bfgfr of GO:0004714 * Added synonym "BRT" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym BRT of GO:0004714 * Added synonym "Bsk" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Bsk of GO:0004714 * Added synonym "C-FMS" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym C-FMS of GO:0004714 * Added synonym "CAK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym CAK of GO:0004714 * Added synonym "CCK4" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym CCK4 of GO:0004714 * Added synonym "CD115" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym CD115 of GO:0004714 * Added synonym "CD135" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym CD135 of GO:0004714 * Added synonym "CDw135" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym CDw135 of GO:0004714 * Added synonym "Cek1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Cek1 of GO:0004714 * Added synonym "Cek10" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Cek10 of GO:0004714 * Added synonym "Cek11" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Cek11 of GO:0004714 * Added synonym "Cek2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Cek2 of GO:0004714 * Added synonym "Cek3" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Cek3 of GO:0004714 * Added synonym "Cek5" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Cek5 of GO:0004714 * Added synonym "Cek6" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Cek6 of GO:0004714 * Added synonym "Cek7" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Cek7 of GO:0004714 * Added synonym "CFD1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym CFD1 of GO:0004714 * Added synonym "CKIT" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym CKIT of GO:0004714 * Added synonym "CSF1R" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym CSF1R of GO:0004714 * Added synonym "DAlk" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym DAlk of GO:0004714 * Added synonym "DDR1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym DDR1 of GO:0004714 * Added synonym "DDR2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym DDR2 of GO:0004714 * Added synonym "Dek" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Dek of GO:0004714 * Added synonym "DKFZp434C1418" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym DKFZp434C1418 of GO:0004714 * Added synonym "Drosophila Eph kinase activity" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Drosophila Eph kinase activity of GO:0004714 * Changed synonym scope of GO:0004714 from "Related" to "Narrow" * Added synonym "DRT" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym DRT of GO:0004714 * Added synonym "DTK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym DTK of GO:0004714 * Added synonym "Ebk" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Ebk of GO:0004714 * Added synonym "ECK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym ECK of GO:0004714 * Added synonym "EDDR1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym EDDR1 of GO:0004714 * Added synonym "Eek" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Eek of GO:0004714 * Added synonym "EGFR" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym EGFR of GO:0004714 * Added synonym "Ehk2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Ehk2 of GO:0004714 * Added synonym "Ehk3" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Ehk3 of GO:0004714 * Added synonym "Elk" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Elk of GO:0004714 * Added synonym "EPH" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym EPH of GO:0004714 * Added synonym "EPHA1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym EPHA1 of GO:0004714 * Added synonym "EPHA2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym EPHA2 of GO:0004714 * Added synonym "EPHA6" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym EPHA6 of GO:0004714 * Added synonym "EPHA7" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym EPHA7 of GO:0004714 * Added synonym "EPHA8" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym EPHA8 of GO:0004714 * Added synonym "EPHB1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym EPHB1 of GO:0004714 * Added synonym "EPHB2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym EPHB2 of GO:0004714 * Added synonym "EPHB3" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym EPHB3 of GO:0004714 * Added synonym "EPHB4" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym EPHB4 of GO:0004714 * Added synonym "EphB5" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym EphB5 of GO:0004714 * Added synonym "ephrin-B3 receptor tyrosine kinase activity" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym ephrin-B3 receptor tyrosine kinase activity of GO:0004714 * Changed synonym scope of GO:0004714 from "Related" to "Narrow" * Added synonym "EPHT" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym EPHT of GO:0004714 * Added synonym "EPHT2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym EPHT2 of GO:0004714 * Added synonym "EPHT3" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym EPHT3 of GO:0004714 * Added synonym "EPHX" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym EPHX of GO:0004714 * Added synonym "ERBB" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym ERBB of GO:0004714 * Added synonym "ERBB1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym ERBB1 of GO:0004714 * Added synonym "ERBB2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym ERBB2 of GO:0004714 * Added synonym "ERBB3" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym ERBB3 of GO:0004714 * Added synonym "ERBB4" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym ERBB4 of GO:0004714 * Added synonym "ERK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym ERK of GO:0004714 * Added synonym "Eyk" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Eyk of GO:0004714 * Added synonym "FGFR1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym FGFR1 of GO:0004714 * Added synonym "FGFR2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym FGFR2 of GO:0004714 * Added synonym "FGFR3" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym FGFR3 of GO:0004714 * Added synonym "FGFR4" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym FGFR4 of GO:0004714 * Added synonym "FLG" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym FLG of GO:0004714 * Added synonym "FLK1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym FLK1 of GO:0004714 * Added synonym "FLK2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym FLK2 of GO:0004714 * Added synonym "FLT1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym FLT1 of GO:0004714 * Added synonym "FLT2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym FLT2 of GO:0004714 * Added synonym "FLT3" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym FLT3 of GO:0004714 * Added synonym "FLT4" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym FLT4 of GO:0004714 * Added synonym "FMS" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym FMS of GO:0004714 * Added synonym "Fv2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Fv2 of GO:0004714 * Added synonym "HBGFR" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym HBGFR of GO:0004714 * Added synonym "HEK11" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym HEK11 of GO:0004714 * Added synonym "HEK2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym HEK2 of GO:0004714 * Added synonym "HEK3" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym HEK3 of GO:0004714 * Added synonym "HEK5" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym HEK5 of GO:0004714 * Added synonym "HEK6" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym HEK6 of GO:0004714 * Added synonym "HEP" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym HEP of GO:0004714 * Added synonym "HER2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym HER2 of GO:0004714 * Added synonym "HER3" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym HER3 of GO:0004714 * Added synonym "HER4" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym HER4 of GO:0004714 * Added synonym "HGFR" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym HGFR of GO:0004714 * Added synonym "HSCR1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym HSCR1 of GO:0004714 * Added synonym "HTK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym HTK of GO:0004714 * Added synonym "IGF1R" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym IGF1R of GO:0004714 * Added synonym "INSR" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym INSR of GO:0004714 * Added synonym "INSRR" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym INSRR of GO:0004714 * Added synonym "insulin receptor protein-tyrosine kinase activity" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym insulin receptor protein-tyrosine kinase activity of GO:0004714 * Changed synonym scope of GO:0004714 from "Related" to "Narrow" * Added synonym "IR" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym IR of GO:0004714 * Added synonym "IRR" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym IRR of GO:0004714 * Added synonym "JTK12" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym JTK12 of GO:0004714 * Added synonym "JTK13" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym JTK13 of GO:0004714 * Added synonym "JTK14" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym JTK14 of GO:0004714 * Added synonym "JWS" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym JWS of GO:0004714 * Added synonym "K-SAM" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym K-SAM of GO:0004714 * Added synonym "KDR" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym KDR of GO:0004714 * Added synonym "KGFR" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym KGFR of GO:0004714 * Added synonym "KIA0641" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym KIA0641 of GO:0004714 * Added synonym "KIAA1079" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym KIAA1079 of GO:0004714 * Added synonym "KIAA1459" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym KIAA1459 of GO:0004714 * Added synonym "Kil" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Kil of GO:0004714 * Added synonym "Kin15" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Kin15 of GO:0004714 * Added synonym "Kin16" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Kin16 of GO:0004714 * Added synonym "KIT" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym KIT of GO:0004714 * Added synonym "KLG" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym KLG of GO:0004714 * Added synonym "LTK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym LTK of GO:0004714 * Added synonym "MCF3" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym MCF3 of GO:0004714 * Added synonym "Mdk1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Mdk1 of GO:0004714 * Added synonym "Mdk2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Mdk2 of GO:0004714 * Added synonym "Mdk5" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Mdk5 of GO:0004714 * Added synonym "MEhk1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym MEhk1 of GO:0004714 * Added synonym "MEN2A/B" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym MEN2A/B of GO:0004714 * Added synonym "Mep" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Mep of GO:0004714 * Added synonym "MER" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym MER of GO:0004714 * Added synonym "MERTK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym MERTK of GO:0004714 * Added synonym "MET" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym MET of GO:0004714 * Added synonym "Mlk1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Mlk1 of GO:0004714 * Added synonym "Mlk2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Mlk2 of GO:0004714 * Added synonym "Mrk" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Mrk of GO:0004714 * Added synonym "MST1R" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym MST1R of GO:0004714 * Added synonym "MTC1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym MTC1 of GO:0004714 * Added synonym "MUSK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym MUSK of GO:0004714 * Added synonym "Myk1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Myk1 of GO:0004714 * Added synonym "N-SAM" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym N-SAM of GO:0004714 * Added synonym "NEP" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym NEP of GO:0004714 * Added synonym "NET" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym NET of GO:0004714 * Added synonym "Neu" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Neu of GO:0004714 * Added synonym "neurite outgrowth regulating kinase activity" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym neurite outgrowth regulating kinase activity of GO:0004714 * Changed synonym scope of GO:0004714 from "Related" to "Narrow" * Added synonym "NGL" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym NGL of GO:0004714 * Added synonym "NOK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym NOK of GO:0004714 * Added synonym "nork" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym nork of GO:0004714 * Added synonym "novel oncogene with kinase-domain activity" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym novel oncogene with kinase-domain activity of GO:0004714 * Changed synonym scope of GO:0004714 from "Related" to "Narrow" * Added synonym "Nsk2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Nsk2 of GO:0004714 * Added synonym "NTRK1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym NTRK1 of GO:0004714 * Added synonym "NTRK2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym NTRK2 of GO:0004714 * Added synonym "NTRK3" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym NTRK3 of GO:0004714 * Added synonym "NTRK4" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym NTRK4 of GO:0004714 * Added synonym "NTRKR1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym NTRKR1 of GO:0004714 * Added synonym "NTRKR2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym NTRKR2 of GO:0004714 * Added synonym "NTRKR3" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym NTRKR3 of GO:0004714 * Added synonym "Nuk" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Nuk of GO:0004714 * Added synonym "NYK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym NYK of GO:0004714 * Added synonym "PCL" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym PCL of GO:0004714 * Added synonym "PDGFR" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym PDGFR of GO:0004714 * Added synonym "PDGFRA" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym PDGFRA of GO:0004714 * Added synonym "PDGFRB" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym PDGFRB of GO:0004714 * Added synonym "PHB6" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym PHB6 of GO:0004714 * Added synonym "PTK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym PTK of GO:0004714 * Added synonym "PTK3" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym PTK3 of GO:0004714 * Added synonym "PTK7" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym PTK7 of GO:0004714 * Added synonym "receptor protein tyrosine kinase activity" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym receptor protein tyrosine kinase activity of GO:0004714 * Changed synonym scope of GO:0004714 from "Related" to "Exact" * Added synonym "receptor protein-tyrosine kinase activity" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym receptor protein-tyrosine kinase activity of GO:0004714 * Changed synonym scope of GO:0004714 from "Related" to "Exact" * Added synonym "RET" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym RET of GO:0004714 * Added synonym "RON" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym RON of GO:0004714 * Added synonym "ROR1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym ROR1 of GO:0004714 * Added synonym "ROR2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym ROR2 of GO:0004714 * Added synonym "ROS1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym ROS1 of GO:0004714 * Added synonym "RSE" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym RSE of GO:0004714 * Added synonym "RTK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym RTK of GO:0004714 * Added synonym "RYK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym RYK of GO:0004714 * Added synonym "SEA" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym SEA of GO:0004714 * Added synonym "Sek2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Sek2 of GO:0004714 * Added synonym "Sek3" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Sek3 of GO:0004714 * Added synonym "Sek4" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Sek4 of GO:0004714 * Added synonym "Sfr" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Sfr of GO:0004714 * Added synonym "SKY" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym SKY of GO:0004714 * Added synonym "STK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym STK of GO:0004714 * Added synonym "STK1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym STK1 of GO:0004714 * Added synonym "TEK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym TEK of GO:0004714 * Added synonym "TIE" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym TIE of GO:0004714 * Added synonym "TIE1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym TIE1 of GO:0004714 * Added synonym "TIE2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym TIE2 of GO:0004714 * Added synonym "TIF" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym TIF of GO:0004714 * Added synonym "TKT" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym TKT of GO:0004714 * Added synonym "TRK" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym TRK of GO:0004714 * Added synonym "TRKA" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym TRKA of GO:0004714 * Added synonym "TRKB" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym TRKB of GO:0004714 * Added synonym "TRKC" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym TRKC of GO:0004714 * Added synonym "TRKE" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym TRKE of GO:0004714 * Added synonym "TYK1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym TYK1 of GO:0004714 * Added synonym "TYRO10" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym TYRO10 of GO:0004714 * Added synonym "tyro11" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym tyro11 of GO:0004714 * Added synonym "TYRO3" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym TYRO3 of GO:0004714 * Added synonym "tyro5" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym tyro5 of GO:0004714 * Added synonym "tyro6" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym tyro6 of GO:0004714 * Added synonym "TYRO7" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym TYRO7 of GO:0004714 * Added synonym "UFO" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym UFO of GO:0004714 * Added synonym "VEGFR1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym VEGFR1 of GO:0004714 * Added synonym "VEGFR2" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym VEGFR2 of GO:0004714 * Added synonym "VEGFR3" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym VEGFR3 of GO:0004714 * Added synonym "Vik" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Vik of GO:0004714 * Added synonym "YK1" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym YK1 of GO:0004714 * Added synonym "Yrk" to GO:0004714 * Added general dbxref EC:2.7.10.1 to synonym Yrk of GO:0004714 * Deleted general dbxref EC:2.7.1.- from GO:0004716 * Added general dbxref EC:2.7.10.- to GO:0004716 * Deleted definition dbxref EC:2.7.3.11 from GO:0008256 * Added definition dbxref EC:2.7.13.1 to GO:0008256 * Deleted general dbxref EC:2.7.3.11 from GO:0008256 * Added general dbxref EC:2.7.13.1 to GO:0008256 * Added synonym "ATP:protein-L-histidine N-pros-phosphotransferase activity" to GO:0008256 * Added general dbxref EC:2.7.13.1 to synonym ATP:protein-L-histidine N-pros-phosphotransferase activity of GO:0008256 * Changed synonym scope of GO:0008256 from "Related" to "Exact" * Added synonym "ATP:protein-L-histidine Npi-phosphotransferase activity" to GO:0008256 * Added general dbxref EC:2.7.13.1 to synonym ATP:protein-L-histidine Npi-phosphotransferase activity of GO:0008256 * Changed synonym scope of GO:0008256 from "Related" to "Exact" * Added synonym "HK2" to GO:0008256 * Added general dbxref EC:2.7.13.1 to synonym HK2 of GO:0008256 * Deleted definition dbxref EC:2.7.3.12 from GO:0008257 * Added definition dbxref EC:2.7.13.2 to GO:0008257 * Deleted general dbxref EC:2.7.3.12 from GO:0008257 * Added general dbxref EC:2.7.13.2 to GO:0008257 * Added synonym "ATP:protein-L-histidine N-tele-phosphotransferase activity" to GO:0008257 * Added general dbxref EC:2.7.13.2 to synonym ATP:protein-L-histidine N-tele-phosphotransferase activity of GO:0008257 * Changed synonym scope of GO:0008257 from "Related" to "Exact" * Added synonym "ATP:protein-L-histidine Ntau-phosphotransferase activity" to GO:0008257 * Added general dbxref EC:2.7.13.2 to synonym ATP:protein-L-histidine Ntau-phosphotransferase activity of GO:0008257 * Changed synonym scope of GO:0008257 from "Related" to "Exact" * Added synonym "HK3" to GO:0008257 * Added general dbxref EC:2.7.13.2 to synonym HK3 of GO:0008257 * Deleted general dbxref PMID:9680965 from synonym ADP-glucose pyrophosphorylase activity of GO:0008878 * Deleted GO:0009432 --OBO_REL:is_a--> GO:0009991 * Copied GO:0009432 to GO:0031668 with type OBO_REL:is_a * Deleted GO:0031131 --OBO_REL:is_a--> GO:0009991 * Copied GO:0031131 to GO:0031668 with type OBO_REL:is_a * Deleted GO:0042262 --OBO_REL:is_a--> GO:0009991 From gocvs at genome.Stanford.EDU Thu Sep 13 21:30:41 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Thu, 13 Sep 2007 21:30:41 -0700 (PDT) Subject: [go-diff] GO update 09/13/2007 Message-ID: <200709140430.VAA19697@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.477 by 5.478 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Deleted synonym "cAMP-dependent protein kinase A activity" from GO:0004674 * Deleted synonym "cGMP-dependent protein kinase activity" from GO:0004674 * Deleted synonym "CK-2" from GO:0004674 * Deleted synonym "CKI" from GO:0004674 * Deleted synonym "CKII" from GO:0004674 * Deleted general dbxref EC:2.7.1.- from GO:0004675 * Added general dbxref EC:2.7.11.- to GO:0004675 * Deleted general dbxref EC:2.7.1.- from GO:0004676 * Added general dbxref EC:2.7.11.- to GO:0004676 * Set definition of GO:0004677 to "Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, requiring the presence of DNA." * Added definition dbxref GOC:mah to GO:0004677 * Deleted general dbxref EC:2.7.1.- from GO:0004677 * Added general dbxref EC:2.7.11.- to GO:0004677 * Deleted general dbxref EC:2.7.1.- from GO:0004679 * Added general dbxref EC:2.7.11.- to GO:0004679 * Deleted general dbxref EC:2.7.1.- from GO:0004680 * Added general dbxref EC:2.7.11.- to GO:0004680 * Deleted general dbxref EC:2.7.1.- from GO:0004681 * Added general dbxref EC:2.7.11.- to GO:0004681 * Deleted definition dbxref EC:2.7.1.37 from GO:0004682 * Added definition dbxref EC:2.7.11.1 to GO:0004682 * Deleted general dbxref EC:2.7.1.- from GO:0004683 * Deleted general dbxref EC:2.7.1.123 from GO:0004683 * Deleted general dbxref MetaCyc:2.7.1.123-RXN from GO:0004683 * Added general dbxref EC:2.7.11.17 to GO:0004683 * Added general dbxref MetaCyc:2.7.11.17-RXN to GO:0004683 * Deleted general dbxref EC:2.7.1.- from GO:0004686 * Added general dbxref EC:2.7.11.20 to GO:0004686 * Deleted definition dbxref EC:2.7.1.38 from GO:0004689 * Added definition dbxref EC:2.7.11.19 to GO:0004689 * Deleted general dbxref EC:2.7.1.38 from GO:0004689 * Added general dbxref EC:2.7.11.19 to GO:0004689 * Deleted general dbxref EC:2.7.1.- from GO:0004690 * Added general dbxref EC:2.7.11.- to GO:0004690 * Deleted definition dbxref EC:2.7.1.37 from GO:0004691 * Added definition dbxref EC:2.7.11.11 to GO:0004691 * Added general dbxref EC:2.7.11.11 to GO:0004691 * Deleted general dbxref EC:2.7.1.- from GO:0004692 * Added general dbxref EC:2.7.11.12 to GO:0004692 * Deleted general dbxref EC:2.7.1.- from GO:0004693 * Added general dbxref EC:2.7.11.22 to GO:0004693 * Deleted general dbxref EC:2.7.1.- from GO:0004694 * Added general dbxref EC:2.7.11.- to GO:0004694 * Deleted general dbxref EC:2.7.1.- from GO:0004695 * Added general dbxref EC:2.7.11.- to GO:0004695 * Deleted general dbxref EC:2.7.1.- from GO:0004696 * Added general dbxref EC:2.7.11.- to GO:0004696 * added secondary id GO:0004701 to GO:0004697 * Set definition of GO:0004697 to "Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol." * Added definition dbxref EC:2.7.11.13 to GO:0004697 * Deleted general dbxref EC:2.7.1.- from GO:0004697 * Added general dbxref EC:2.7.11.13 to GO:0004697 * Added synonym "diacylglycerol-activated phospholipid-dependent PKC activity" to GO:0004697 * Changed synonym scope of GO:0004697 from "Related" to "Exact" * Added synonym "diacylglycerol-activated phospholipid-dependent protein kinase C activity" to GO:0004697 * Changed synonym scope of GO:0004697 from "Related" to "Exact" * Set definition of GO:0004698 to "Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol and calcium." * Added definition dbxref EC:2.7.11.13 to GO:0004698 * Added definition dbxref GOC:mah to GO:0004698 * Deleted general dbxref EC:2.7.1.- from GO:0004698 * Added general dbxref EC:2.7.11.- to GO:0004698 * Set definition of GO:0004699 to "Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein, with a requirement for diacylglycerol but not calcium." * Added definition dbxref EC:2.7.11.13 to GO:0004699 * Added definition dbxref GOC:mah to GO:0004699 * Deleted general dbxref EC:2.7.1.- from GO:0004700 * Added general dbxref EC:2.7.11.- to GO:0004700 * Deleted GO:0004701 --OBO_REL:is_a--> GO:0004697 * Destroyed object GO:0004701 * Deleted general dbxref EC:2.7.1.- from GO:0004702 * Added general dbxref EC:2.7.11.- to GO:0004702 * Deleted general dbxref EC:2.7.1.- from GO:0004703 * Added general dbxref EC:2.7.11.16 to GO:0004703 * Deleted general dbxref EC:2.7.1.- from GO:0004704 * Added general dbxref EC:2.7.11.- to GO:0004704 * Deleted general dbxref EC:2.7.1.- from GO:0004705 * Added general dbxref EC:2.7.11.- to GO:0004705 * Deleted general dbxref EC:2.7.1.- from GO:0004706 * Added general dbxref EC:2.7.11.- to GO:0004706 * Deleted general dbxref EC:2.7.1.- from GO:0004707 * Added general dbxref EC:2.7.11.24 to GO:0004707 * Deleted general dbxref EC:2.7.1.- from GO:0004708 * Added general dbxref EC:2.7.11.- to GO:0004708 * Deleted general dbxref EC:2.7.1.- from GO:0004709 * Added general dbxref EC:2.7.11.25 to GO:0004709 * Deleted general dbxref EC:2.7.1.- from GO:0004710 * Added general dbxref EC:2.7.11.- to GO:0004710 * Deleted general dbxref EC:2.7.1.- from GO:0004711 * Added general dbxref EC:2.7.11.- to GO:0004711 * Deleted general dbxref EC:2.7.1.- from GO:0004718 * Added general dbxref EC:2.7.11.- to GO:0004718 * Deleted definition dbxref EC:2.7.1.99 from GO:0004740 * Added definition dbxref EC:2.7.11.2 to GO:0004740 * Deleted general dbxref EC:2.7.1.99 from GO:0004740 * Deleted general dbxref MetaCyc:2.7.1.99-RXN from GO:0004740 * Added general dbxref EC:2.7.11.2 to GO:0004740 * Added general dbxref MetaCyc:2.7.11.2-RXN to GO:0004740 * Deleted definition dbxref EC:2.7.1.37 from GO:0005952 * Added definition dbxref EC:2.7.11.11 to GO:0005952 * Deleted definition dbxref EC:2.7.1.37 from GO:0005956 * Deleted definition dbxref EC:2.7.1.38 from GO:0005964 * Added definition dbxref EC:2.7.11.19 to GO:0005964 * Deleted general dbxref EC:2.7.13.1 from synonym protein-histidine pros-kinase activity of GO:0008256 * Deleted general dbxref EC:2.7.13.2 from synonym protein-histidine tele-kinase activity of GO:0008257 * Deleted general dbxref EC:2.7.1.- from GO:0008338 * Added general dbxref EC:2.7.11.- to GO:0008338 * Deleted general dbxref EC:2.7.1.- from GO:0008339 * Added general dbxref EC:2.7.11.- to GO:0008339 * Deleted general dbxref EC:2.7.1.- from GO:0008349 * Added general dbxref EC:2.7.11.- to GO:0008349 * Deleted general dbxref EC:2.7.1.- from GO:0008384 * Added general dbxref EC:2.7.11.10 to GO:0008384 * Deleted general dbxref EC:2.7.1.- from GO:0008545 * Added general dbxref EC:2.7.11.- to GO:0008545 * Deleted definition dbxref EC:2.7.1.37 from GO:0008603 * Deleted definition dbxref EC:2.7.1.37 from GO:0008605 * Deleted definition dbxref EC:2.7.1.38 from GO:0008607 * Added definition dbxref EC:2.7.11.19 to GO:0008607 * Deleted definition dbxref EC:2.7.1.116 from GO:0008772 * Added definition dbxref EC:2.7.11.5 to GO:0008772 * Deleted general dbxref EC:2.7.1.116 from GO:0008772 * Added general dbxref EC:2.7.11.5 to GO:0008772 * Deleted general dbxref PMID:9680965 from synonym ADP-glucose pyrophosphorylase activity of GO:0008878 * Deleted definition dbxref EC:2.7.1.129 from GO:0016905 * Added definition dbxref EC:2.7.11.7 to GO:0016905 * Deleted general dbxref EC:2.7.1.129 from GO:0016905 * Added general dbxref EC:2.7.11.7 to GO:0016905 * Deleted general dbxref EC:2.7.1.- from GO:0016908 * Added general dbxref EC:2.7.11.- to GO:0016908 * Deleted general dbxref EC:2.7.1.- from GO:0016909 * Added general dbxref EC:2.7.11.- to GO:0016909 * Deleted general dbxref EC:2.7.1.- from GO:0019199 * Added general dbxref EC:2.7.11.- to GO:0019199 * Deleted general dbxref EC:2.7.1.- from GO:0019912 * Added general dbxref EC:2.7.11.- to GO:0019912 * Changed definition of GO:0047321 from "Catalysis of the reaction: microsomal-membrane protein + pyrophosphate = phosphate + O-phospho-microsomal-membrane protein." to "Catalysis of the reaction: microsomal-membrane protein + diphosphate = pyrophosphate + O-phospho-microsomal-membrane protein." * Deleted definition dbxref EC:2.7.1.104 from GO:0047321 * Deleted definition dbxref MetaCyc:2.7.1.104-RXN from GO:0047321 * Added definition dbxref EC:2.7.99.1 to GO:0047321 * Added definition dbxref MetaCyc:2.7.99.1-RXN to GO:0047321 * Deleted general dbxref EC:2.7.1.104 from GO:0047321 * Deleted general dbxref MetaCyc:2.7.1.104-RXN from GO:0047321 * Added general dbxref EC:2.7.99.1 to GO:0047321 * Added general dbxref MetaCyc:2.7.99.1-RXN to GO:0047321 * Deleted definition dbxref EC:2.7.1.109 from GO:0047322 * Added definition dbxref EC:2.7.11.31 to GO:0047322 * Deleted general dbxref EC:2.7.1.109 from GO:0047322 * Added general dbxref EC:2.7.11.31 to GO:0047322 * Deleted definition dbxref EC:2.7.1.115 from GO:0047323 * Deleted definition dbxref MetaCyc:2.7.1.115-RXN from GO:0047323 * Added definition dbxref EC:2.7.11.4 to GO:0047323 * Added definition dbxref MetaCyc:2.7.11.4-RXN to GO:0047323 * Deleted general dbxref EC:2.7.1.115 from GO:0047323 * Deleted general dbxref MetaCyc:2.7.1.115-RXN from GO:0047323 * Added general dbxref EC:2.7.11.4 to GO:0047323 * Added general dbxref MetaCyc:2.7.11.4-RXN to GO:0047323 * Deleted definition dbxref EC:2.7.1.126 from GO:0047696 * Added definition dbxref EC:2.7.11.15 to GO:0047696 * Deleted general dbxref EC:2.7.1.126 from GO:0047696 * Added general dbxref EC:2.7.11.15 to GO:0047696 * Deleted definition dbxref EC:2.7.1.120 from GO:0047764 * Deleted definition dbxref MetaCyc:CALDESMON-KINASE-RXN from GO:0047764 * Added definition dbxref GOC:curators to GO:0047764 * Deleted general dbxref EC:2.7.1.120 from GO:0047764 * Deleted general dbxref MetaCyc:CALDESMON-KINASE-RXN from GO:0047764 * Deleted definition dbxref EC:2.7.1.110 from GO:0047848 * Added definition dbxref EC:2.7.11.3 to GO:0047848 * Deleted general dbxref EC:2.7.1.110 from GO:0047848 * Added general dbxref EC:2.7.11.3 to GO:0047848 * Deleted definition dbxref EC:2.7.1.131 from GO:0050063 * Added definition dbxref EC:2.7.11.29 to GO:0050063 * Deleted general dbxref EC:2.7.1.131 from GO:0050063 * Added general dbxref EC:2.7.11.29 to GO:0050063 * Deleted definition dbxref EC:2.7.1.125 from GO:0050254 * Added definition dbxref EC:2.7.11.14 to GO:0050254 * Deleted general dbxref EC:2.7.1.125 from GO:0050254 * Added general dbxref EC:2.7.11.14 to GO:0050254 * Deleted definition dbxref EC:2.7.1.135 from GO:0050321 * Added definition dbxref EC:2.7.11.26 to GO:0050321 * Deleted general dbxref EC:2.7.1.135 from GO:0050321 * Added general dbxref EC:2.7.11.26 to GO:0050321 * Deleted definition dbxref EC:2.7.1.132 from GO:0050359 * Added definition dbxref EC:2.7.11.28 to GO:0050359 * Deleted general dbxref EC:2.7.1.132 from GO:0050359 * Added general dbxref EC:2.7.11.28 to GO:0050359 * Deleted definition dbxref EC:2.7.1.124 from GO:0050369 * Added definition dbxref EC:2.7.11.6 to GO:0050369 * Deleted general dbxref EC:2.7.1.124 from GO:0050369 * Added general dbxref EC:2.7.11.6 to GO:0050369 * Deleted definition dbxref EC:2.7.1.128 from GO:0050405 * Added definition dbxref EC:2.7.11.27 to GO:0050405 * Deleted general dbxref EC:2.7.1.128 from GO:0050405 * Added general dbxref EC:2.7.11.27 to GO:0050405 * Deleted definition dbxref MetaCyc:2.7.1.152-RXN from GO:0050517 * Added definition dbxref MetaCyc:2.7.4.21-RXN to GO:0050517 From gocvs at genome.Stanford.EDU Tue Sep 18 21:30:43 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Tue, 18 Sep 2007 21:30:43 -0700 (PDT) Subject: [go-diff] GO update 09/18/2007 Message-ID: <200709190430.VAA14158@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.478 by 5.480 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Created object of type obo:TERM with id GO:0032578 * Created object of type obo:TERM with id GO:0032579 * Created object of type obo:TERM with id GO:0032580 * Populated new object GO:0032578 (macro) * Changed name of GO:0032578 from "" to "aleurone grain membrane" * Set definition of GO:0032578 to "The lipid bilayer surrounding an aleurone grain." * Added definition dbxref GOC:ecd to GO:0032578 * Copied GO:0032578 to GO:0033095 with type part_of * Copied GO:0032578 to GO:0030659 with type OBO_REL:is_a * Assigned namespace "cellular_component" to GO:0032578 * Populated new object GO:0032579 (macro) * Changed name of GO:0032579 from "" to "apical lamina of hyaline layer" * Set definition of GO:0032579 to "A fibrous network that is part of the hyalin layer extracellular matrix. The apical lamina is thought to be principally composed of the glycoproteins fibropellins. This matrix has been found in echinoderms." * Added definition dbxref GOC:ecd to GO:0032579 * Added definition dbxref PMID:2060714 to GO:0032579 * Added definition dbxref PMID:7608987 to GO:0032579 * Added definition dbxref PMID:9638331 to GO:0032579 * Copied GO:0032579 to GO:0033166 with type part_of * Copied GO:0032579 to GO:0044420 with type OBO_REL:is_a * Assigned namespace "cellular_component" to GO:0032579 * Populated new object GO:0032580 (macro) * Changed name of GO:0032580 from "" to "Golgi cisterna membrane" * Set definition of GO:0032580 to "The lipid bilayer surrounding any of the thin, flattened compartments that form the central portion of the Golgi complex." * Added definition dbxref GOC:ecd to GO:0032580 * Added definition dbxref GOC:mah to GO:0032580 * Added synonym "Golgi stack membrane" to GO:0032580 * Changed synonym scope of GO:0032580 from "Related" to "Exact" * Copied GO:0032580 to GO:0000139 with type OBO_REL:is_a * Copied GO:0032580 to GO:0031985 with type part_of * Assigned namespace "cellular_component" to GO:0032580 * Deleted GO:0000282 --OBO_REL:is_a--> GO:0030468 * Copied GO:0000282 to GO:0030010 with type OBO_REL:is_a * Changed synonym scope of GO:0005794 from "Exact" to "Broad" * Added comment "Note that 'electron transport ; GO:0006118' is not a child of transport because electron transport is not a type of directed movement of substances." * added secondary id GO:0030012 to GO:0007163 * added secondary id GO:0030467 to GO:0007163 * Added synonym "establishment and/or maintenance of cell polarity (sensu Fungi)" to GO:0007163 * Changed synonym scope of GO:0007163 from "Related" to "Narrow" * Added synonym "establishment and/or maintenance of cell polarity (sensu Saccharomyces)" to GO:0007163 * Changed synonym scope of GO:0007163 from "Related" to "Narrow" * Added general dbxref EC:2.7.13.1 to synonym protein-histidine pros-kinase activity of GO:0008256 * Deleted general dbxref EC:2.7.13.2 from synonym protein-histidine tele-kinase activity of GO:0008257 * Deleted synonym "sulfatase" from GO:0008484 * Added synonym "sulfatase activity" to GO:0008484 * Changed synonym scope of GO:0008484 from "Related" to "Exact" * Deleted general dbxref PMID:9680965 from synonym ADP-glucose pyrophosphorylase activity of GO:0008878 * Deleted general dbxref :e from synonym NADH-nitrate reductase activity of GO:0009703 * added secondary id GO:0000283 to GO:0030010 * added secondary id GO:0030468 to GO:0030010 * Added synonym "bud site selection/establishment of cell polarity (sensu Saccharomyces)" to GO:0030010 * Changed synonym scope of GO:0030010 from "Related" to "Narrow" * Added synonym "establishment of cell polarity (sensu Fungi)" to GO:0030010 * Changed synonym scope of GO:0030010 from "Related" to "Narrow" * Added synonym "establishment of cell polarity (sensu Saccharomyces)" to GO:0030010 * Changed synonym scope of GO:0030010 from "Related" to "Narrow" * added secondary id GO:0030013 to GO:0030011 * added secondary id GO:0030469 to GO:0030011 * Added synonym "maintenance of cell polarity (sensu Fungi)" to GO:0030011 * Changed synonym scope of GO:0030011 from "Related" to "Narrow" * Added synonym "maintenance of cell polarity (sensu Saccharomyces)" to GO:0030011 * Changed synonym scope of GO:0030011 from "Related" to "Narrow" * Deleted GO:0030467 --OBO_REL:is_a--> GO:0007163 * Deleted GO:0030469 --OBO_REL:is_a--> GO:0030467 * Deleted GO:0030468 --OBO_REL:is_a--> GO:0030467 * Destroyed object GO:0030467 * Deleted GO:0030468 --OBO_REL:is_a--> GO:0030010 * Deleted GO:0030468 --OBO_REL:is_a--> GO:0030467 * Deleted GO:0000282 --OBO_REL:is_a--> GO:0030468 * Destroyed object GO:0030468 * Deleted GO:0030469 --OBO_REL:is_a--> GO:0030467 * Deleted GO:0030469 --OBO_REL:is_a--> GO:0030011 * Destroyed object GO:0030469 From gocvs at genome.Stanford.EDU Wed Sep 19 21:30:40 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Wed, 19 Sep 2007 21:30:40 -0700 (PDT) Subject: [go-diff] GO update 09/19/2007 Message-ID: <200709200430.VAA24320@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.480 by 5.482 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Created object of type obo:TERM with id GO:0032581 * Populated new object GO:0032581 (macro) * Changed name of GO:0032581 from "" to "ER-dependent peroxisome biogenesis" * Set definition of GO:0032581 to "The de novo formation of peroxisomes from the endoplasmic reticulum." * Added definition dbxref PMID:16717127 to GO:0032581 * Added definition dbxref PMID:17646399 to GO:0032581 * Added synonym "endoplasmic reticulum-dependent peroxisome biogenesis" to GO:0032581 * Changed synonym scope of GO:0032581 from "Related" to "Exact" * Copied GO:0032581 to GO:0007031 with type OBO_REL:is_a * Assigned namespace "biological_process" to GO:0032581 * Added general dbxref EC:2.7.13.2 to synonym protein-histidine tele-kinase activity of GO:0008257 * Added general dbxref PMID:9680965 to synonym ADP-glucose pyrophosphorylase activity of GO:0008878 * Deleted GO:0032539 --OBO_REL:is_a--> GO:0048519 * Deleted GO:0032540 --OBO_REL:is_a--> GO:0048518 * Deleted GO:0050587 --OBO_REL:is_a--> GO:0016491 From gocvs at genome.Stanford.EDU Thu Sep 20 21:30:40 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Thu, 20 Sep 2007 21:30:40 -0700 (PDT) Subject: [go-diff] GO update 09/20/2007 Message-ID: <200709210430.VAA04294@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.482 by 5.483 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Created object of type obo:TERM with id GO:0032582 * Created object of type obo:TERM with id GO:0032583 * Populated new object GO:0032582 (macro) * Changed name of GO:0032582 from "" to "negative regulation of gene-specific transcription" * Set definition of GO:0032582 to "Any process that stops, prevents or reduces the DNA-dependent transcription of a specific gene or genes." * Added definition dbxref GOC:mah to GO:0032582 * Added synonym "down regulation of gene-specific transcription" to GO:0032582 * Changed synonym scope of GO:0032582 from "Related" to "Exact" * Added synonym "down-regulation of gene-specific transcription" to GO:0032582 * Changed synonym scope of GO:0032582 from "Related" to "Exact" * Added synonym "downregulation of gene-specific transcription" to GO:0032582 * Changed synonym scope of GO:0032582 from "Related" to "Exact" * Added synonym "inhibition of gene-specific transcription" to GO:0032582 * Changed synonym scope of GO:0032582 from "Related" to "Narrow" * Copied GO:0032582 to GO:0032583 with type OBO_REL:is_a * Copied GO:0032582 to GO:0045892 with type OBO_REL:is_a * Assigned namespace "biological_process" to GO:0032582 * Populated new object GO:0032583 (macro) * Changed name of GO:0032583 from "" to "regulation of gene-specific transcription" * Set definition of GO:0032583 to "Any process that modulates the DNA-dependent transcription of a specific gene or genes." * Added definition dbxref GOC:mah to GO:0032583 * Copied GO:0032583 to GO:0006355 with type OBO_REL:is_a * Assigned namespace "biological_process" to GO:0032583 * Copied GO:0015663 to GO:0022891 with type OBO_REL:is_a * Changed definition of GO:0019836 from "The processes by which an organism effects hemolysis, the lytic destruction of red blood cells with the release of intracellular hemoglobin, in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." to "The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in the host organism by a symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:add to GO:0019836 * Copied GO:0031926 to GO:0022891 with type OBO_REL:is_a * Copied GO:0031927 to GO:0022891 with type OBO_REL:is_a * Copied GO:0043193 to GO:0032583 with type OBO_REL:is_a * Changed definition of GO:0052331 from "The processes by which an organism effects hemolysis, the lytic destruction of red blood cells with the release of intracellular hemoglobin, in a second organism, where the two organisms are in a symbiotic interaction." to "The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in one organism by another, where two organisms are in a symbiotic interaction." * Added definition dbxref GOC:add to GO:0052331 From gocvs at genome.Stanford.EDU Fri Sep 21 21:31:30 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Fri, 21 Sep 2007 21:31:30 -0700 (PDT) Subject: [go-diff] GO update 09/21/2007 Message-ID: <200709220431.VAA11781@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.483 by 5.484 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Deleted synonym "regulation of blood pressure by hormones" from GO:0001990 * Deleted synonym "endonuclease VIII activity" from GO:0003684 * Deleted synonym "leukotriene-A4 hydrolase activity" from GO:0004463 * Deleted synonym "unfolded protein response, cleavage of primary transcript encoding UFP-specific transcription factor" from GO:0004521 * Deleted synonym "shikimate 5-dehydrogenase activity" from GO:0004764 * Deleted synonym "serpin" from GO:0004867 * Changed synonym scope of GO:0004867 from "Exact" to "Narrow" * Deleted synonym "plasmid binding" from GO:0005727 * Deleted synonym "axonemal motor activity" from GO:0005930 * Deleted synonym "effector caspase activity" from GO:0006915 * Deleted synonym "cyanate hydratase activity" from GO:0008824 * Deleted synonym "phospholipase A1 activity" from GO:0008970 * Changed synonym scope of GO:0015810 from "Narrow" to "Related" * Changed synonym scope of GO:0015813 from "Narrow" to "Related" * Deleted synonym "iron-iron nitrogenase activity" from GO:0016611 * Deleted synonym "asparagine/glutamine permease activity" from GO:0022857 * Deleted synonym "activation of MAPK during sporulation (sensu Fungi)" from GO:0030437 * Deleted synonym "activation of MAPK during sporulation (sensu Saccharomyces)" from GO:0030437 * Deleted synonym "activation of MAPKK during sporulation (sensu Fungi)" from GO:0030437 * Deleted synonym "activation of MAPKK during sporulation (sensu Saccharomyces)" from GO:0030437 * Deleted synonym "activation of MAPKKK during sporulation (sensu Fungi)" from GO:0030437 * Deleted synonym "activation of MAPKKK during sporulation (sensu Saccharomyces)" from GO:0030437 * Deleted synonym "inactivation of MAPK during sporulation (sensu Fungi)" from GO:0030437 * Deleted synonym "inactivation of MAPK during sporulation (sensu Saccharomyces)" from GO:0030437 * Deleted synonym "MAPKKK cascade during sporulation (sensu Fungi)" from GO:0030437 * Deleted synonym "MAPKKK cascade during sporulation (sensu Saccharomyces)" from GO:0030437 * Deleted synonym "L-phenylalanine biosynthetic process from chorismate via phenylpyruvate" from GO:0033585 * Added synonym "L-phenylalanine biosynthesis from chorismate via phenylpyruvate" to GO:0033585 * Changed synonym scope of GO:0033585 from "Related" to "Exact" * Deleted synonym "positive regulation of T cell proliferation" from GO:0042102 * Deleted synonym "cyclohexadienyl dehydrogenase activity" from GO:0047794 * Deleted synonym "spindle midzone assembly involved in mitosis" from GO:0051256 * Deleted synonym "regulation of adrenocorticotropic hormone secretion" from GO:0051459 * Added synonym "regulation of adrenocorticotropin secretion" to GO:0051459 * Changed synonym scope of GO:0051459 from "Related" to "Exact" * Changed name of GO:0051460 from "negative regulation of adrenocorticotropin hormone secretion" to "negative regulation of adrenocorticotropic hormone secretion" * Deleted synonym "negative regulation of adrenocorticotropic hormone secretion" from GO:0051460 * Added synonym "negative regulation of adrenocorticotropin secretion" to GO:0051460 * Changed synonym scope of GO:0051460 from "Related" to "Exact" * Changed name of GO:0051461 from "positive regulation of adrenocorticotropin hormone secretion" to "positive regulation of adrenocorticotropic hormone secretion" * Deleted synonym "positive regulation of adrenocorticotropic hormone secretion" from GO:0051461 * Added synonym "positive regulation of adrenocorticotropin secretion" to GO:0051461 * Changed synonym scope of GO:0051461 from "Related" to "Exact" From gocvs at genome.Stanford.EDU Fri Sep 28 21:30:45 2007 From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology) Date: Fri, 28 Sep 2007 21:30:45 -0700 (PDT) Subject: [go-diff] GO update 09/28/2007 Message-ID: <200709290430.VAA06160@bread.Stanford.EDU> OBODIFF of gene_ontology_edit.obo version 5.484 by 5.485 Starting obodiff at /share/go/bin/oboedit/current using 256M of memory * Added general dbxref EC:2.5.1.30 to synonym all-trans-heptaprenyl-diphosphate synthase activity of GO:0000010 * Added general dbxref EC:2.5.1.30 to synonym heptaprenyl diphosphate synthase activity of GO:0000010 * Added general dbxref EC:2.5.1.30 to synonym heptaprenyl pyrophosphate synthetase activity of GO:0000010 * Added general dbxref EC:3.5.4.2 to synonym adenase activity of GO:0000034 * Added general dbxref EC:3.5.4.2 to synonym adenine aminase activity of GO:0000034 * Added general dbxref EC:1.3.99.1 to synonym fumarate dehydrogenase activity of GO:0000104 * Added general dbxref EC:1.3.99.1 to synonym fumarate reductase activity of GO:0000104 * Added general dbxref EC:1.3.99.1 to synonym fumaric hydrogenase activity of GO:0000104 * Added general dbxref EC:1.3.99.1 to synonym succinic dehydrogenase activity of GO:0000104 * Added general dbxref EC:1.1.1.101 to synonym palmitoyldihydroxyacetone-phosphate reductase activity of GO:0000140 * Added general dbxref EC:3.6.1.22 to synonym NAD(+) pyrophosphatase activity of GO:0000210 * Added general dbxref EC:3.6.1.22 to synonym NAD+ pyrophosphatase activity of GO:0000210 * Added general dbxref EC:3.6.1.22 to synonym NADH pyrophosphatase activity of GO:0000210 * Added general dbxref EC:3.6.1.22 to synonym NADP pyrophosphatase activity of GO:0000210 * Added general dbxref EC:3.1.27.9 to synonym tRNA-splicing endonuclease activity of GO:0000213 * Added general dbxref EC:3.5.1.52 to synonym glycopeptidase activity of GO:0000224 * Added general dbxref EC:3.5.1.52 to synonym glycopeptide N-glycosidase activity of GO:0000224 * Added general dbxref EC:3.5.1.52 to synonym N-glycanase activity of GO:0000224 * Added general dbxref EC:3.5.1.52 to synonym N-oligosaccharide glycopeptidase activity of GO:0000224 * Added general dbxref EC:3.5.1.89 to synonym acetylglucosaminylphosphatidylinositol deacetylase activity of GO:0000225 * Added general dbxref EC:3.5.1.89 to synonym GlcNAc-PI de-N-acetylase activity of GO:0000225 * Added general dbxref EC:3.5.1.89 to synonym GlcNAc-PI deacetylase activity of GO:0000225 * Added general dbxref EC:3.5.1.89 to synonym N-acetyl-D-glucosaminylphosphatidylinositol acetylhydrolase activity of GO:0000225 * Added general dbxref EC:3.5.1.89 to synonym N-acetylglucosaminylphosphatidylinositol de-N-acetylase activity of GO:0000225 * Added general dbxref EC:1.3.1.71 to synonym C-24(28) sterol reductase activity of GO:0000246 * Added general dbxref EC:1.3.1.71 to synonym sterol Delta(24(28))-methylene reductase activity of GO:0000246 * Added general dbxref EC:1.3.1.71 to synonym sterol Delta(24(28))-reductase activity of GO:0000246 * Added general dbxref EC:5.4.99.7 to synonym 2,3-epoxysqualene--lanosterol cyclase activity of GO:0000250 * Added general dbxref EC:5.4.99.7 to synonym oxidosqualene--lanosterol cyclase activity of GO:0000250 * Added general dbxref EC:5.4.99.7 to synonym squalene-2,3-oxide-lanosterol cyclase activity of GO:0000250 * Added general dbxref EC:2.1.1.59 to synonym cytochrome c (lysine) methyltransferase activity of GO:0000277 * Added general dbxref EC:2.1.1.59 to synonym cytochrome c methyltransferase activity of GO:0000277 * Added general dbxref EC:2.1.1.59 to synonym cytochrome c-specific protein methylase III activity of GO:0000277 * Added general dbxref EC:2.1.1.59 to synonym cytochrome c-specific protein-lysine methyltransferase activity of GO:0000277 * Added general dbxref EC:2.7.1.150 to synonym type III PIP kinase activity of GO:0000285 * Added general dbxref EC:1.16.1.7 to synonym ferric chelate reductase activity of GO:0000293 * Added general dbxref EC:1.16.1.7 to synonym iron chelate reductase activity of GO:0000293 * Added general dbxref EC:1.16.1.7 to synonym NADH:Fe(3+) oxidoreductase activity of GO:0000293 * Added general dbxref EC:1.16.1.7 to synonym NADH:Fe(3+)-EDTA reductase activity of GO:0000293 * Added general dbxref EC:3.6.1.10 to synonym metaphosphatase activity of GO:0000298 * Added general dbxref EC:3.6.1.10 to synonym polyphosphatase activity of GO:0000298 * Added general dbxref EC:3.6.1.10 to synonym polyphosphate depolymerase activity of GO:0000298 * Added general dbxref EC:2.7.7.1 to synonym adenosine triphosphate-nicotinamide mononucleotide transadenylase activity of GO:0000309 * Added general dbxref EC:2.7.7.1 to synonym diphosphopyridine nucleotide pyrophosphorylase activity of GO:0000309 * Added general dbxref EC:2.7.7.1 to synonym NAD(+) diphosphorylase activity of GO:0000309 * Added general dbxref EC:2.7.7.1 to synonym NAD(+) pyrophosphorylase activity of GO:0000309 * Added general dbxref EC:2.7.7.1 to synonym nicotinamide adenine dinucleotide pyrophosphorylase activity of GO:0000309 * Added general dbxref EC:2.7.7.1 to synonym nicotinamide mononucleotide adenylyltransferase activity of GO:0000309 * Added general dbxref EC:2.7.7.1 to synonym NMN adenylyltransferase activity of GO:0000309 * Added general dbxref EC:2.7.7.1 to synonym NMNAT activity of GO:0000309 * Added general dbxref EC:2.4.2.22 to synonym Xan phosphoribosyltransferase activity of GO:0000310 * Added general dbxref EC:2.4.2.22 to synonym xanthosine 5'-phosphate pyrophosphorylase activity of GO:0000310 * Added general dbxref EC:2.4.2.22 to synonym xanthylate pyrophosphorylase activity of GO:0000310 * Added general dbxref EC:2.4.2.22 to synonym xanthylic pyrophosphorylase activity of GO:0000310 * Added general dbxref EC:2.4.2.22 to synonym XMP pyrophosphorylase activity of GO:0000310 * Added general dbxref EC:1.13.11.6 to synonym 3-hydroxyanthranilic acid dioxygenase activity of GO:0000334 * Added general dbxref EC:1.1.1.4 to synonym (R)-2,3-butanediol dehydrogenase activity of GO:0000721 * Added general dbxref EC:1.1.1.4 to synonym (R)-diacetyl reductase activity of GO:0000721 * Added general dbxref EC:1.1.1.4 to synonym 1-amino-2-propanol dehydrogenase activity of GO:0000721 * Added general dbxref EC:1.1.1.4 to synonym 1-amino-2-propanol oxidoreductase activity of GO:0000721 * Added general dbxref EC:1.1.1.4 to synonym 2,3-butanediol dehydrogenase activity of GO:0000721 * Added general dbxref EC:1.1.1.4 to synonym aminopropanol oxidoreductase activity of GO:0000721 * Added general dbxref EC:1.1.1.4 to synonym butylene glycol dehydrogenase activity of GO:0000721 * Added general dbxref EC:1.1.1.4 to synonym butyleneglycol dehydrogenase activity of GO:0000721 * Added general dbxref EC:1.1.1.4 to synonym D-(-)-butanediol dehydrogenase activity of GO:0000721 * Added general dbxref EC:1.1.1.4 to synonym D-1-amino-2-propanol dehydrogenase activity of GO:0000721 * Added general dbxref EC:1.1.1.4 to synonym D-1-amino-2-propanol:NAD(2) oxidoreductase activity of GO:0000721 * Added general dbxref EC:1.1.1.4 to synonym D-aminopropanol dehydrogenase activity of GO:0000721 * Added general dbxref EC:1.1.1.4 to synonym D-butanediol dehydrogenase activity of GO:0000721 * Added general dbxref EC:1.1.1.4 to synonym diacetyl (acetoin) reductase activity of GO:0000721 * Added general dbxref EC:1.14.11.17 to synonym 2-aminoethanesulfonate dioxygenase activity of GO:0000908 * Added general dbxref EC:1.14.11.17 to synonym alpha-ketoglutarate-dependent taurine dioxygenase activity of GO:0000908 * Added general dbxref EC:3.4.22.34 to synonym asparaginyl endopeptidase activity of GO:0001509 * Added general dbxref EC:3.4.22.34 to synonym bean endopeptidase activity of GO:0001509 * Added general dbxref EC:3.4.22.34 to synonym hemoglobinase activity of GO:0001509 * Added general dbxref EC:3.4.22.34 to synonym phaseolin activity of GO:0001509 * Added general dbxref EC:3.4.22.34 to synonym vicilin peptidohydrolase activity of GO:0001509 * Added general dbxref EC:1.10.99.2 to synonym N-ribosyldihydronicotinamide dehydrogenase (quinone) activity of GO:0001512 * Added general dbxref EC:1.10.99.2 to synonym NAD(P)H:quinone oxidoreductase 2 activity of GO:0001512 * Added general dbxref EC:1.10.99.2 to synonym NQO(2) activity of GO:0001512 * Added general dbxref EC:1.10.99.2 to synonym NRH:quinone oxidoreductase 2 activity of GO:0001512 * Added general dbxref EC:1.10.99.2 to synonym QR2 activity of GO:0001512 * Added general dbxref EC:1.10.99.2 to synonym quinone reductase 2 activity of GO:0001512 * Added general dbxref EC:2.4.99.3 to synonym GalNAc alpha-2,6-sialyltransferase I activity of GO:0001665 * Added general dbxref EC:1.4.3.2 to synonym ophio-amino-acid oxidase activity of GO:0001716 * Added general dbxref EC:2.7.1.138 to synonym acylsphingosine kinase activity of GO:0001729 * Added general dbxref EC:1.8.3.5 to synonym prenylcysteine lyase activity of GO:0001735 * Added general dbxref EC:4.1.1.45 to synonym picolinic acid decarboxylase activity of GO:0001760 * Added general dbxref EC:2.4.1.223 to synonym alpha-1,4-N-acetylglucosaminyltransferase activity of GO:0001888 * Added general dbxref EC:2.4.1.223 to synonym alpha-N-acetylglucosaminyltransferase I activity of GO:0001888 * Added general dbxref EC:2.4.1.223 to synonym glucuronosylgalactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity of GO:0001888 * Added general dbxref EC:5.2.1.8 to synonym cyclophilin activity of GO:0003755 * Added general dbxref EC:5.2.1.8 to synonym peptidylprolyl cis-trans isomerase activity of GO:0003755 * Added general dbxref EC:5.2.1.8 to synonym PPIase activity of GO:0003755 * Added general dbxref EC:5.2.1.8 to synonym rotamase activity of GO:0003755 * Added general dbxref EC:5.3.4.1 to synonym protein disulfide-isomerase reaction of GO:0003756 * Added general dbxref EC:5.3.4.1 to synonym S-S rearrangase activity of GO:0003756 * Added general dbxref EC:3.4.21.22 to synonym Christmas factor activity of GO:0003803 * Added general dbxref EC:3.4.21.6 to synonym prothrombase activity of GO:0003804 * Added general dbxref EC:3.4.21.6 to synonym prothrombinase activity of GO:0003804 * Added general dbxref EC:3.4.21.6 to synonym Stuart factor activity of GO:0003804 * Added general dbxref EC:3.4.21.6 to synonym thrombokinase activity of GO:0003804 * Added general dbxref EC:3.4.21.27 to synonym plasma thromboplastin antecedent activity of GO:0003805 * Added general dbxref EC:3.4.21.38 to synonym hageman factor activity of GO:0003806 * Added general dbxref EC:3.4.21.34 to synonym kininogenin activity of GO:0003807 * Added general dbxref EC:3.4.21.34 to synonym serum kallikrein activity of GO:0003807 * Added general dbxref EC:3.4.21.69 to synonym activated blood coagulation factor XIV activity of GO:0003808 * Added general dbxref EC:3.4.21.69 to synonym autoprothrombin IIA activity of GO:0003808 * Added general dbxref EC:3.4.21.5 to synonym fibrinogenase activity of GO:0003809 * Added general dbxref EC:2.3.2.13 to synonym glutaminylpeptide gamma-glutamyltransferase activity of GO:0003810 * Added general dbxref EC:2.3.2.13 to synonym polyamine transglutaminase activity of GO:0003810 * Added general dbxref EC:3.4.21.47 to synonym C3 convertase activity of GO:0003812 * Added general dbxref EC:3.4.21.47 to synonym C3 proactivator of GO:0003812 * Added general dbxref EC:3.4.21.47 to synonym C5 convertase activity of GO:0003812 * Added general dbxref EC:3.4.21.47 to synonym complement component C3/C5 convertase (alternative) activity of GO:0003812 * Added general dbxref EC:3.4.21.47 to synonym complement factor B activity of GO:0003812 * Added general dbxref EC:3.4.21.47 to synonym properdin factor B activity of GO:0003812 * Added general dbxref EC:3.4.21.43 to synonym C3 convertase activity of GO:0003813 * Added general dbxref EC:3.4.21.43 to synonym C5 convertase activity of GO:0003813 * Added general dbxref EC:3.4.21.43 to synonym complement C2 activity of GO:0003813 * Added general dbxref EC:3.4.21.42 to synonym C1s esterase activity of GO:0003816 * Added general dbxref EC:3.4.21.46 to synonym C3 convertase activator activity of GO:0003817 * Added general dbxref EC:3.4.21.46 to synonym C3 proactivator convertase activity of GO:0003817 * Added general dbxref EC:3.4.21.45 to synonym C3b inactivator activity of GO:0003818 * Added general dbxref EC:3.4.21.45 to synonym C3b/C4b inactivator activity of GO:0003818 * Added general dbxref EC:3.4.21.45 to synonym complement component C3b inactivator activity of GO:0003818 * Added general dbxref EC:2.4.1.15 to synonym trehalose phosphate synthase activity of GO:0003825 * Added general dbxref EC:2.4.1.15 to synonym trehalose phosphate synthetase activity of GO:0003825 * Added general dbxref EC:2.4.1.15 to synonym UDP-glucose-glucosephosphate glucosyltransferase activity of GO:0003825 * Added general dbxref EC:2.4.1.101 to synonym alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase activity of GO:0003827 * Added general dbxref EC:2.4.1.101 to synonym GNTI activity of GO:0003827 * Added general dbxref EC:2.4.1.101 to synonym N-acetylglucosaminyltransferase I activity of GO:0003827 * Added general dbxref EC:2.4.1.101 to synonym N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase I activity of GO:0003827 * Added general dbxref EC:2.4.1.101 to synonym UDP-N-acetylglucosaminyl:alpha-1,3-D-mannoside-beta-1,2-N-acetylglucosaminyltransferase I activity of GO:0003827 * Added general dbxref EC:2.4.1.101 to synonym UDP-N-acetylglucosaminyl:alpha-3-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I activity of GO:0003827 * Added general dbxref EC:2.4.1.101 to synonym uridine diphosphoacetylglucosamine-alpha-1,3-mannosylglycoprotein beta-1,2-N-acetylglucosaminyltransferase activity of GO:0003827 * Added general dbxref EC:2.4.99.8 to synonym alpha-2,8-sialyltransferase activity of GO:0003828 * Added general dbxref EC:2.4.1.102 to synonym beta(6)-N-acetylglucosaminyltransferase activity of GO:0003829 * Added general dbxref EC:2.4.1.102 to synonym O-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase I activity of GO:0003829 * Added general dbxref EC:2.4.1.144 to synonym Beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase activity of GO:0003830 * Added general dbxref EC:2.4.1.144 to synonym GnTIII activity of GO:0003830 * Added general dbxref EC:2.4.1.144 to synonym N-acetylglucosaminyltransferase III activity of GO:0003830 * Added general dbxref EC:2.4.1.144 to synonym N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase III activity of GO:0003830 * Added general dbxref EC:2.4.1.144 to synonym uridine diphosphoacetylglucosamine-glycopeptide beta-4-acetylglucosaminyltransferase III activity of GO:0003830 * Added general dbxref EC:2.4.1.38 to synonym GalT activity of GO:0003831 * Added general dbxref EC:2.4.1.38 to synonym glycoprotein 4-beta-galactosyltransferase activity of GO:0003831 * Added general dbxref EC:2.4.1.38 to