[go-diff] GO update 09/06/2007

Thu Sep 6 21:30:39 PDT 2007

OBODIFF of gene_ontology_edit.obo version 5.471 by 5.474

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0032576
* Created object of type obo:TERM with id GO:0032577
* Populated new object GO:0032576 (macro)
  * Changed name of GO:0032576 from "<new term>" to "O-linoleoyltransferase activity"
  * Set definition of GO:0032576 to "Catalysis of the transfer of a linoleoyl ((9Z,12Z)-octadeca-9,12-dienoyl) group to an oxygen atom on the acceptor molecule."
  * Added definition dbxref GOC:cb to GO:0032576
  * Copied GO:0032576 to GO:0008374 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0032576
* Populated new object GO:0032577 (macro)
  * Changed name of GO:0032577 from "<new term>" to "phosphatidylcholine:cardiolipin O-linoleoyltransferase"
  * Set definition of GO:0032577 to "Catalysis of the transfer of a linoleoyl ((9Z,12Z)-octadeca-9,12-dienoyl) group from phosphatidylcholine to an oxygen atom on a cardiolipin molecule."
  * Added definition dbxref GOC:cb to GO:0032577
  * Added definition dbxref GOC:mah to GO:0032577
  * Added synonym "phosphatidylcholine:cardiolipin linoleoyltransferase" to GO:0032577
  * Changed synonym scope of GO:0032577 from "Related" to "Exact"
  * Copied GO:0032577 to GO:0032576 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0032577
* Deleted synonym "activation of MAPK (mating sensu Fungi)" from GO:0000750
* Deleted synonym "activation of MAPK (mating sensu Saccharomyces)" from GO:0000750
* Deleted synonym "activation of MAPKK (mating sensu Fungi)" from GO:0000750
* Deleted synonym "activation of MAPKK (mating sensu Saccharomyces)" from GO:0000750
* Deleted synonym "activation of MAPKKK (mating sensu Fungi)" from GO:0000750
* Deleted synonym "activation of MAPKKK (mating sensu Saccharomyces)" from GO:0000750
* Deleted synonym "inactivation of MAPK (mating sensu Fungi)" from GO:0000750
* Deleted synonym "inactivation of MAPK (mating sensu Saccharomyces)" from GO:0000750
* Deleted synonym "nuclear translocation of MAPK (mating sensu Fungi)" from GO:0000750
* Deleted synonym "nuclear translocation of MAPK (mating sensu Saccharomyces)" from GO:0000750
* Deleted synonym "activation of MAPK (pseudohyphal growth)" from GO:0001402
* Deleted synonym "activation of MAPKK (pseudohyphal growth)" from GO:0001402
* Deleted synonym "activation of MAPKKK (pseudohyphal growth)" from GO:0001402
* Deleted synonym "inactivation of MAPK (pseudohyphal growth)" from GO:0001402
* Deleted synonym "nuclear translocation of MAPK (pseudohyphal growth)" from GO:0001402
* Deleted GO:0001560 --part_of--> GO:0009991
* Copied GO:0001560 to GO:0031668 with type part_of
* Deleted synonym "NK T cell differentiation" from GO:0001865
* Changed name of GO:0002111 from "BRAC2-BRAF35 complex" to "BRCA2-BRAF35 complex"
* Changed definition of GO:0002111 from "A heterodimeric complex of BRACA2 and BRAF35 (BRAC2-associated factor 35). The BRAF35-BRCA2 complex is often associated with condensed chromatin during mitosis." to "A heterodimeric complex of BRCA2 and BRAF35 (BRCA2-associated factor 35). The BRCA2-BRAF35 complex is often associated with condensed chromatin during mitosis."
* Deleted synonym "inhibitory C-type lectin receptor signaling pathway" from GO:0002769
* Deleted synonym "farnesyl-diphosphate farnesyl transferase complex" from GO:0004310
* Deleted synonym "farnesyl-diphosphate farnesyltransferase activity" from GO:0004310
* Deleted synonym "phospholipase A2 activity" from GO:0004623
* Deleted synonym "cell adhesion molecule activity" from GO:0005102
* Deleted synonym "selectin" from GO:0005102
* Deleted synonym "colicin" from GO:0005198
* Deleted synonym "pore-forming toxin activity" from GO:0005198
* Deleted synonym "puparial glue (sensu Diptera)" from GO:0005198
* Deleted synonym "yolk protein" from GO:0005198
* Deleted synonym "calcium-dependent cell adhesion molecule activity" from GO:0005515
* Deleted synonym "calcium-independent cell adhesion molecule activity" from GO:0005515
* Deleted synonym "cell adhesion molecule activity" from GO:0005515
* Deleted synonym "receptor-associated protein activity" from GO:0005515
* Deleted synonym "lectin" from GO:0005529
* Deleted synonym "metaxin" from GO:0005741
* Deleted synonym "negative regulation of transcription of homeotic gene (Polycomb group)" from GO:0006342
* Deleted synonym "negative regulation of transcription of homeotic gene (trithorax group)" from GO:0006342
* Deleted synonym "positive regulation of transcription of homeotic gene (Polycomb group)" from GO:0006342
* Deleted synonym "positive regulation of transcription of homeotic gene (trithorax group)" from GO:0006342
* Deleted synonym "regulation of transcription of homeotic gene (Polycomb group)" from GO:0006342
* Deleted synonym "regulation of transcription of homeotic gene (trithorax group)" from GO:0006342
* Changed synonym scope of GO:0006378 from "Related" to "Narrow"
* Deleted synonym "selectin" from GO:0007155
* Deleted synonym "galactose binding lectin" from GO:0007157
* Deleted synonym "galectin" from GO:0007157
* Deleted synonym "lectin" from GO:0007157
* Deleted synonym "mannose binding lectin" from GO:0007157
* Deleted synonym "N-acetylgalactosamine lectin" from GO:0007157
* Deleted synonym "blue-sensitive opsin" from GO:0007603
* Deleted synonym "green-sensitive opsin" from GO:0007603
* Deleted synonym "long-wave-sensitive opsin" from GO:0007603
* Deleted synonym "red-sensitive opsin" from GO:0007603
* Deleted synonym "short-wave-sensitive opsin" from GO:0007603
* Deleted synonym "violet-sensitive opsin" from GO:0007603
* Deleted GO:0008137 --OBO_REL:is_a--> GO:0016655
* Deleted synonym "metabolic process" from GO:0008152
* Deleted synonym "vitamin B6 metabolic process" from GO:0008614
* Deleted synonym "vitamin B6 metabolism" from GO:0008614
* Deleted general dbxref PMID:9680965 from synonym ADP-glucose pyrophosphorylase activity of GO:0008878
* Deleted synonym "ice nucleation activity" from GO:0009405
* Deleted GO:0009991 --OBO_REL:is_a--> GO:0007154
* Deleted synonym "L-glutamine transmembrane transporter activity" from GO:0015186
* Deleted synonym "glycine-, glutamate-, thienylcyclohexylpiperidine binding" from GO:0016594
* Deleted synonym "glycine-, glutamate-, thienylcyclohexylpiperidine binding" from GO:0016595
* Deleted synonym "glycine-, glutamate-, thienylcyclohexylpiperidine binding" from GO:0016596
* Deleted synonym "SUMO-dependent protein catabolic process" from GO:0016925
* Deleted synonym "SUMO-dependent protein catabolism" from GO:0016925
* Deleted synonym "SUMO-dependent protein catabolic process" from GO:0016926
* Deleted synonym "SUMO-dependent protein catabolism" from GO:0016926
* Deleted synonym "galectin" from GO:0016936
* Deleted synonym "Rho GTPase binding" from GO:0017048
* Deleted synonym "iron incorporation into iron-sulfur cluster via hexakis-L-cysteinyl hexairon hexasulfide" from GO:0018198
* Deleted synonym "iron incorporation into iron-sulfur cluster via hexakis-L-cysteinyl triiron trisulfide" from GO:0018198
* Deleted synonym "iron incorporation into iron-sulfur cluster via hexakis-L-cysteinyl hexairon hexasulfide" from GO:0018283
* Deleted synonym "iron incorporation into iron-sulfur cluster via hexakis-L-cysteinyl triiron trisulfide" from GO:0018283
* Deleted synonym "carbon phosphorus lyase activity" from GO:0018835
* Deleted synonym "conotoxin activity" from GO:0019855
* Deleted synonym "cell adhesion molecule activity" from GO:0030246
* Deleted synonym "cell adhesion receptor activity" from GO:0030246
* Deleted synonym "3-methylquercitin 7-O-methyltransferase activity" from GO:0030757
* Added synonym "positive regulation of actin polymerization and/or depolymerization" to GO:0030838
* Changed synonym scope of GO:0030838 from "Related" to "Broad"
* Deleted synonym "small nuclear RNA" from GO:0031202
* Copied GO:0031668 to GO:0007154 with type OBO_REL:is_a
* Deleted GO:0031679 --OBO_REL:is_a--> GO:0016655
* Copied GO:0042262 to GO:0031668 with type OBO_REL:is_a
* Deleted synonym "vitamin A biosynthesis" from GO:0042904
* Deleted synonym "vitamin A biosynthetic process" from GO:0042904
* Changed synonym scope of GO:0043190 from "Narrow" to "Related"
* Deleted synonym "avoidance of host defenses" from GO:0044413
* Added synonym "avoidance of host defences" to GO:0044413
* Changed synonym scope of GO:0044413 from "Related" to "Exact"
* Changed synonym scope of GO:0045098 from "Related" to "Narrow"
* Changed synonym scope of GO:0045098 from "Related" to "Narrow"
* Changed synonym scope of GO:0045098 from "Related" to "Narrow"
* Changed synonym scope of GO:0045098 from "Related" to "Narrow"
* Changed synonym scope of GO:0045098 from "Related" to "Narrow"
* Deleted synonym "positive regulation of Notch signaling pathway" from GO:0045747
* Added synonym "positive regulation of Notch signalling pathway" to GO:0045747
* Changed synonym scope of GO:0045747 from "Related" to "Exact"
* Deleted synonym "1-acylglycerophosphocholine O-acyltransferase activity" from GO:0047184
* Deleted synonym "[citrate-(pro-3S)-lyase] thiolesterase activity" from GO:0047778
* Deleted synonym "negative regulation of transcription of homeotic gene (Polycomb group)" from GO:0048096
* Deleted synonym "negative regulation of transcription of homeotic gene (trithorax group)" from GO:0048096
* Deleted synonym "positive regulation of transcription of homeotic gene (Polycomb group)" from GO:0048096
* Deleted synonym "positive regulation of transcription of homeotic gene (trithorax group)" from GO:0048096
* Deleted synonym "regulation of transcription of homeotic gene (Polycomb group)" from GO:0048096
* Deleted synonym "regulation of transcription of homeotic gene (trithorax group)" from GO:0048096
* Copied GO:0050136 to GO:0016655 with type OBO_REL:is_a
* Changed synonym scope of GO:0050488 from "Narrow" to "Related"
* Changed synonym scope of GO:0050489 from "Narrow" to "Related"
* Deleted synonym "selectin" from GO:0050839
* Deleted definition dbxref GOC:ecd from GO:0051074
* Added definition dbxref GOC:ecd< to GO:0051074
* Deleted synonym "regulation of NK T cell differentiation" from GO:0051136
* Deleted synonym "negative regulation of NK T cell differentiation" from GO:0051137
* Deleted synonym "positive regulation of NK T cell differentiation" from GO:0051138
* Deleted synonym "anaphase promoting complex activation" from GO:0051443
* Deleted synonym "anaphase-promoting complex activation" from GO:0051443
* Deleted synonym "anaphase-promoting complex activation" from GO:0051488
* Added synonym "anaphase promoting complex activation" to GO:0051488
* Changed synonym scope of GO:0051488 from "Related" to "Exact"
* Deleted synonym "activation of bipolar cell growth" from GO:0051518
* Deleted synonym "oocyte nucleus localization during oocyte axis determination" from GO:0051663
* Added synonym "oocyte nucleus localisation during oocyte axis determination" to GO:0051663
* Changed synonym scope of GO:0051663 from "Related" to "Exact"
* Changed synonym scope of GO:0051693 from "Exact" to "Related"
* Changed synonym scope of GO:0051693 from "Exact" to "Related"
* Changed name of GO:0052548 from "regulation of protease activity" to "regulation of endopeptidase activity"
* Changed definition of GO:0052548 from "Any process that modulates the frequency, rate or extent of nuclease activity, the endohydrolysis of peptide linkages within proteins." to "Any process that modulates the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide linkages within proteins."
* Added definition dbxref GOC:hjd to GO:0052548