[go-diff] GO update 09/10/2007

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_edit.obo version 5.475 by 5.476

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Changed definition of GO:0001932 from "Any process that modulates the frequency, rate or extent of addition of phosphoric groups into an amino acid in a protein." to "Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein."
* Changed definition of GO:0001933 from "Any process that stops, prevents or decreases the rate of addition of phosphoric groups to amino acids within a protein." to "Any process that stops, prevents or decreases the rate of addition of phosphate groups to amino acids within a protein."
* Changed definition of GO:0001934 from "Any process that activates or increases the frequency, rate or extent of addition of phosphoric groups to amino acids within a protein." to "Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein."
* Changed definition of GO:0002030 from "The process that inhibits the signaling function of a G-protein coupled receptor by addition of a phosphoric group to its third intracellular loop consensu thes site." to "The process that inhibits the signaling function of a G-protein coupled receptor by addition of a phosphate group to its third intracellular loop consensu thes site."
* Changed name of GO:0004198 from "calpain activity" to "calcium-dependent cysteine-type endopeptidase activity"
* Changed definition of GO:0004198 from "Catalysis of the preferential cleavage of Tyr-Xaa, Met-Xaa or Arg-Xaa with Leu or Val as the P2 residue." to "Catalysis of the hydrolysis of nonterminal peptide linkages in oligopeptides or polypeptides by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium."
* Deleted definition dbxref EC:3.4.22.17 from GO:0004198
* Added definition dbxref GOC:mah to GO:0004198
* Deleted general dbxref EC:3.4.22.17 from GO:0004198
* Deleted general dbxref MetaCyc:3.4.22.17-RXN from GO:0004198
* Added synonym "calpain activity" to GO:0004198
* Changed synonym scope of GO:0004198 from "Related" to "Narrow"
* Deleted definition dbxref EC:2.7.1.117 from GO:0004687
* Added definition dbxref EC:2.7.11.18 to GO:0004687
* Deleted general dbxref EC:2.7.1.117 from GO:0004687
* Added general dbxref EC:2.7.11.18 to GO:0004687
* Deleted definition dbxref EC:2.7.1.112 from GO:0004713
* Added definition dbxref EC:2.7.10 to GO:0004713
* Deleted general dbxref EC:2.7.1.112 from GO:0004713
* Added general dbxref EC:2.7.10 to GO:0004713
* Deleted general dbxref EC:2.7.1.- from GO:0004714
* Added general dbxref EC:2.7.10.1 to GO:0004714
* Deleted general dbxref EC:2.7.1.- from GO:0004715
* Added general dbxref EC:2.7.10.2 to GO:0004715
* Changed definition of GO:0006009 from "The process of introducing a phosphoric group into glucose 1-phosphate to produce glucose bisphosphate." to "The process of introducing a phosphate group into glucose 1-phosphate to produce glucose bisphosphate."
* Changed definition of GO:0006019 from "The process of introducing a phosphoric group into deoxyribose 5-phosphate to produce deoxyribose bisphosphate." to "The process of introducing a phosphate group into deoxyribose 5-phosphate to produce deoxyribose bisphosphate."
* Changed definition of GO:0006165 from "The process of introducing a phosphoric group into a nucleoside diphosphate to produce a nucleoside triphosphate." to "The process of introducing a phosphate group into a nucleoside diphosphate to produce a nucleoside triphosphate."
* Changed definition of GO:0006174 from "The process of introducing a phosphoric group into dADP, deoxyadenosine diphosphate, to produce dATP." to "The process of introducing a phosphate group into dADP, deoxyadenosine diphosphate, to produce dATP."
* Changed definition of GO:0006186 from "The process of introducing a phosphoric group into dGDP, deoxyguanosine diphosphate, to produce dGTP." to "The process of introducing a phosphate group into dGDP, deoxyguanosine diphosphate, to produce dGTP."
* Changed definition of GO:0006192 from "The process of introducing a phosphoric group into IDP, inosine (5'-)diphosphate, to produce ITP." to "The process of introducing a phosphate group into IDP, inosine (5'-)diphosphate, to produce ITP."
* Changed definition of GO:0006194 from "The process of introducing a phosphoric group into dIDP, deoxyinosine diphosphate, to produce dITP." to "The process of introducing a phosphate group into dIDP, deoxyinosine diphosphate, to produce dITP."
* Changed definition of GO:0006468 from "The process of introducing a phosphoric group on to a protein." to "The process of introducing a phosphate group on to a protein."
* Changed definition of GO:0006756 from "The process of introducing a phosphoric group into AMP, adenosine monophosphate, to produce ADP. Addition of two phosphoric groups produces ATP." to "The process of introducing a phosphate group into AMP, adenosine monophosphate, to produce ADP. Addition of two phosphate groups produces ATP."
* Changed definition of GO:0006757 from "The process of introducing a phosphoric group into ADP, adenosine diphosphate, to produce ATP." to "The process of introducing a phosphate group into ADP, adenosine diphosphate, to produce ATP."
* Changed definition of GO:0007252 from "The process of introducing a phosphoric group into an I-kappaB protein." to "The process of introducing a phosphate group into an I-kappaB protein."
* Changed definition of GO:0007258 from "The process of introducing a phosphoric group into a JUN protein." to "The process of introducing a phosphate group into a JUN protein."
* Changed definition of GO:0007260 from "The process of introducing a phosphoric group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein." to "The process of introducing a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein."
* Deleted definition dbxref EC:2.7.1.141 from GO:0008353
* Added definition dbxref EC:2.7.11.23 to GO:0008353
* Deleted general dbxref EC:2.7.1.141 from GO:0008353
* Added general dbxref EC:2.7.11.23 to GO:0008353
* Deleted general dbxref PMID:9680965 from synonym ADP-glucose pyrophosphorylase activity of GO:0008878
* Changed definition of GO:0016310 from "The process of introducing a phosphoric group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide." to "The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide."
* Changed definition of GO:0016462 from "Catalysis of the hydrolysis of a pyrophosphate bond between two phosphoric groups, leaving one phosphate on each of the two fragments." to "Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments."
* Changed definition of GO:0016572 from "The modification of histones by addition of phosphoric groups." to "The modification of histones by addition of phosphate groups."
* Changed definition of GO:0016576 from "The modification of histones by removal of phosphoric groups." to "The modification of histones by removal of phosphate groups."
* Changed definition of GO:0031388 from "The process of introducing one or more phosphoric groups into an organic acid." to "The process of introducing one or more phosphate groups into an organic acid."
* Changed definition of GO:0033136 from "The process of introducing a phosphoric group to a serine residue of the STAT3 protein." to "The process of introducing a phosphate group to a serine residue of the STAT3 protein."
* Changed definition of GO:0035303 from "Any process that modulates the frequency, rate or extent of removal of phosphoric groups from a molecule." to "Any process that modulates the frequency, rate or extent of removal of phosphate groups from a molecule."
* Changed definition of GO:0035304 from "Any process that modulates the frequency, rate or extent of removal of phosphoric groups from a protein." to "Any process that modulates the frequency, rate or extent of removal of phosphate groups from a protein."
* Changed definition of GO:0035305 from "Any process the stops, prevents or reduces the frequency, rate or extent of removal of phosphoric groups from a molecule." to "Any process the stops, prevents or reduces the frequency, rate or extent of removal of phosphate groups from a molecule."
* Changed definition of GO:0035306 from "Any process that activates or increases the frequency, rate or extent of removal of phosphoric groups from a molecule." to "Any process that activates or increases the frequency, rate or extent of removal of phosphate groups from a molecule."
* Changed definition of GO:0035307 from "Any process that activates or increases the frequency, rate or extent of removal of phosphoric groups from a protein." to "Any process that activates or increases the frequency, rate or extent of removal of phosphate groups from a protein."
* Changed definition of GO:0035308 from "Any process the stops, prevents or reduces the frequency, rate or extent of removal of phosphoric groups from a protein." to "Any process the stops, prevents or reduces the frequency, rate or extent of removal of phosphate groups from a protein."
* Changed definition of GO:0042325 from "Any process that modulates the frequency, rate or extent of addition of phosphoric groups into a molecule." to "Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule."
* Changed definition of GO:0042326 from "Any process that stops, prevents or decreases the rate of addition of phosphoric groups to a molecule." to "Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule."
* Changed definition of GO:0042327 from "Any process that activates or increases the frequency, rate or extent of addition of phosphoric groups to a molecule." to "Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule."
* Changed definition of GO:0042370 from "The removal of one or more phosphoric groups from thiamin diphosphate, a derivative of thiamin (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle." to "The removal of one or more phosphate groups from thiamin diphosphate, a derivative of thiamin (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle."
* Changed definition of GO:0042501 from "The process of introducing a phosphoric group to a serine residue of a STAT (Signal Transducer and Activator of Transcription) protein." to "The process of introducing a phosphate group to a serine residue of a STAT (Signal Transducer and Activator of Transcription) protein."
* Changed definition of GO:0042502 from "The process of introducing a phosphoric group to a tyrosine residue of a Stat2 protein." to "The process of introducing a phosphate group to a tyrosine residue of a Stat2 protein."
* Changed definition of GO:0042503 from "The process of introducing a phosphoric group to a tyrosine residue of a Stat3 protein." to "The process of introducing a phosphate group to a tyrosine residue of a Stat3 protein."
* Changed definition of GO:0042504 from "The process of introducing a phosphoric group to a tyrosine residue of a Stat4 protein." to "The process of introducing a phosphate group to a tyrosine residue of a Stat4 protein."
* Changed definition of GO:0042505 from "The process of introducing a phosphoric group to a tyrosine residue of a Stat6 protein." to "The process of introducing a phosphate group to a tyrosine residue of a Stat6 protein."
* Changed definition of GO:0042506 from "The process of introducing a phosphoric group to a tyrosine residue of a Stat5 protein." to "The process of introducing a phosphate group to a tyrosine residue of a Stat5 protein."
* Changed definition of GO:0042507 from "The process of introducing a phosphoric group to a tyrosine residue of a Stat7 protein." to "The process of introducing a phosphate group to a tyrosine residue of a Stat7 protein."
* Changed definition of GO:0042508 from "The process of introducing a phosphoric group to a tyrosine residue of a Stat1 protein." to "The process of introducing a phosphate group to a tyrosine residue of a Stat1 protein."
* Changed definition of GO:0042509 from "Any process that modulates the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein." to "Any process that modulates the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein."
* Changed definition of GO:0042510 from "Any process that modulates the frequency, rate or extent of introducing a phosphoric group to a tyrosine residue of a Stat1 protein." to "Any process that modulates the frequency, rate or extent of introducing a phosphate group to a tyrosine residue of a Stat1 protein."
* Changed definition of GO:0042511 from "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat1 protein." to "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat1 protein."
* Changed definition of GO:0042512 from "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat1 protein." to "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat1 protein."
* Changed definition of GO:0042513 from "Any process that modulates the frequency, rate or extent of introducing a phosphoric group to a tyrosine residue of a Stat2 protein." to "Any process that modulates the frequency, rate or extent of introducing a phosphate group to a tyrosine residue of a Stat2 protein."
* Changed definition of GO:0042514 from "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat2 protein." to "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat2 protein."
* Changed definition of GO:0042515 from "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat2 protein." to "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat2 protein."
* Changed definition of GO:0042516 from "Any process that modulates the frequency, rate or extent of introducing a phosphoric group to a tyrosine residue of a Stat3 protein." to "Any process that modulates the frequency, rate or extent of introducing a phosphate group to a tyrosine residue of a Stat3 protein."
* Changed definition of GO:0042517 from "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat3 protein." to "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat3 protein."
* Changed definition of GO:0042518 from "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat3 protein." to "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat3 protein."
* Changed definition of GO:0042519 from "Any process that modulates the frequency, rate or extent of introducing a phosphoric group to a tyrosine residue of a Stat4 protein." to "Any process that modulates the frequency, rate or extent of introducing a phosphate group to a tyrosine residue of a Stat4 protein."
* Changed definition of GO:0042520 from "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat4 protein." to "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat4 protein."
* Changed definition of GO:0042521 from "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat4 protein." to "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat4 protein."
* Changed definition of GO:0042522 from "Any process that modulates the frequency, rate or extent of introducing a phosphoric group to a tyrosine residue of a Stat5 protein." to "Any process that modulates the frequency, rate or extent of introducing a phosphate group to a tyrosine residue of a Stat5 protein."
* Changed definition of GO:0042523 from "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat5 protein." to "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat5 protein."
* Changed definition of GO:0042524 from "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat5 protein." to "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat5 protein."
* Changed definition of GO:0042525 from "Any process that modulates the frequency, rate or extent of introducing a phosphoric group to a tyrosine residue of a Stat6 protein." to "Any process that modulates the frequency, rate or extent of introducing a phosphate group to a tyrosine residue of a Stat6 protein."
* Changed definition of GO:0042526 from "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat6 protein." to "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat6 protein."
* Changed definition of GO:0042527 from "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat6 protein." to "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat6 protein."
* Changed definition of GO:0042528 from "Any process that modulates the frequency, rate or extent of introducing a phosphoric group to a tyrosine residue of a Stat7 protein." to "Any process that modulates the frequency, rate or extent of introducing a phosphate group to a tyrosine residue of a Stat7 protein."
* Changed definition of GO:0042529 from "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat7 protein." to "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat7 protein."
* Changed definition of GO:0042530 from "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a Stat7 protein." to "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a Stat7 protein."
* Changed definition of GO:0042531 from "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein." to "Any process that activates or increases the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein."
* Changed definition of GO:0042532 from "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphoric group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein." to "Any process that stops, prevents or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein."
* Changed definition of GO:0042801 from "Catalysis of the addition of a phosphoric group onto a serine or threonine residue in any member of the polo kinase class of proteins." to "Catalysis of the addition of a phosphate group onto a serine or threonine residue in any member of the polo kinase class of proteins."
* Deleted GO:0042936 --OBO_REL:is_a--> GO:0015197
* Copied GO:0042936 to GO:0015198 with type OBO_REL:is_a
* Deleted GO:0042937 --OBO_REL:is_a--> GO:0015197
* Copied GO:0042937 to GO:0015198 with type OBO_REL:is_a
* Deleted GO:0042938 --OBO_REL:is_a--> GO:0015833
* Copied GO:0042938 to GO:0006857 with type OBO_REL:is_a
* Deleted GO:0042939 --OBO_REL:is_a--> GO:0015833
* Copied GO:0042939 to GO:0006857 with type OBO_REL:is_a
* Changed definition of GO:0042976 from "The process of introducing a phosphoric group to a tyrosine residue of a JAK (Janus Activated Kinase) protein, thereby activating it." to "The process of introducing a phosphate group to a tyrosine residue of a JAK (Janus Activated Kinase) protein, thereby activating it."
* Changed definition of GO:0042977 from "The process of introducing a phosphoric group to a tyrosine residue of a JAK2 (Janus Activated Kinase 2) protein, thereby activating it." to "The process of introducing a phosphate group to a tyrosine residue of a JAK2 (Janus Activated Kinase 2) protein, thereby activating it."
* Changed definition of GO:0046834 from "The process of introducing one or more phosphoric groups into a lipid, any member of a group of substances soluble in lipid solvents but only sparingly soluble in aqueous solvents." to "The process of introducing one or more phosphate groups into a lipid, any member of a group of substances soluble in lipid solvents but only sparingly soluble in aqueous solvents."
* Changed definition of GO:0046835 from "The process of introducing a phosphoric group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y." to "The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y."
* Changed definition of GO:0046838 from "The process of removing a phosphoric group from a phosphorylated carbohydrate, any organic compound based on the general formula Cx(H2O)y with a phosphate moiety attached to it." to "The process of removing a phosphate group from a phosphorylated carbohydrate, any organic compound based on the general formula Cx(H2O)y with a phosphate moiety attached to it."
* Changed definition of GO:0046839 from "The process of removing one or more phosphoric groups from a phosphorylated lipid, any member of a group of substances soluble in lipid solvents but only sparingly soluble in aqueous solvents." to "The process of removing one or more phosphate groups from a phosphorylated lipid, any member of a group of substances soluble in lipid solvents but only sparingly soluble in aqueous solvents."
* Changed definition of GO:0046853 from "The process of introducing a phosphoric group into inositol or an inositol derivative. Inositol is the cyclic alcohol 1,2,3,4,5,6-cyclohexanehexol, which is widely distributed in nature and acts as a growth factor in animals and microorganisms." to "The process of introducing a phosphate group into inositol or an inositol derivative. Inositol is the cyclic alcohol 1,2,3,4,5,6-cyclohexanehexol, which is widely distributed in nature and acts as a growth factor in animals and microorganisms."
* Changed definition of GO:0046854 from "The process of introducing one or more phosphoric groups into a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives." to "The process of introducing one or more phosphate groups into a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives."
* Changed definition of GO:0046855 from "The process of removing a phosphoric group from any mono- or polyphosphorylated inositol." to "The process of removing a phosphate group from any mono- or polyphosphorylated inositol."
* Changed definition of GO:0046856 from "The process of removing one or more phosphoric groups from a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives." to "The process of removing one or more phosphate groups from a phosphoinositide, a class of substances comprising phosphatidylinositol and its derivatives."
* Changed definition of GO:0046939 from "The process of introducing one or more phosphoric groups into a nucleotide to produce a phosphorylated nucleoside." to "The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside."
* Changed definition of GO:0046940 from "The process of introducing one or more phosphoric groups into a nucleoside monophosphate to produce a polyphosphorylated nucleoside." to "The process of introducing one or more phosphate groups into a nucleoside monophosphate to produce a polyphosphorylated nucleoside."