[go-diff] GO update 09/29/2007

Sat Sep 29 21:30:41 PDT 2007

OBODIFF of gene_ontology_edit.obo version 5.485 by 5.487

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0032584
* Created object of type obo:TERM with id GO:0032585
* Created object of type obo:TERM with id GO:0032586
* Created object of type obo:TERM with id GO:0032587
* Created object of type obo:TERM with id GO:0032588
* Created object of type obo:TERM with id GO:0032589
* Created object of type obo:TERM with id GO:0032590
* Created object of type obo:TERM with id GO:0032591
* Created object of type obo:TERM with id GO:0032592
* Populated new object GO:0032584 (macro)
  * Changed name of GO:0032584 from "<new term>" to "growth cone membrane"
  * Set definition of GO:0032584 to "The portion of the plasma membrane surrounding a growth cone."
  * Added definition dbxref GOC:mah to GO:0032584
  * Copied GO:0032584 to GO:0044459 with type OBO_REL:is_a
  * Copied GO:0032584 to GO:0030426 with type part_of
  * Assigned namespace "cellular_component" to GO:0032584
* Populated new object GO:0032585 (macro)
  * Changed name of GO:0032585 from "<new term>" to "multivesicular body membrane"
  * Set definition of GO:0032585 to "The lipid bilayer surrounding a multivesicular body."
  * Added definition dbxref GOC:mah to GO:0032585
  * Added synonym "multivesicular endosome membrane" to GO:0032585
  * Changed synonym scope of GO:0032585 from "Related" to "Exact"
  * Added synonym "MVB membrane" to GO:0032585
  * Changed synonym scope of GO:0032585 from "Related" to "Exact"
  * Added synonym "MVE membrane" to GO:0032585
  * Changed synonym scope of GO:0032585 from "Related" to "Exact"
  * Copied GO:0032585 to GO:0005771 with type part_of
  * Copied GO:0032585 to GO:0031902 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0032585
* Populated new object GO:0032586 (macro)
  * Changed name of GO:0032586 from "<new term>" to "protein storage vacuole membrane"
  * Set definition of GO:0032586 to "The lipid bilayer surrounding a protein storage vacuole."
  * Added definition dbxref GOC:mah to GO:0032586
  * Copied GO:0032586 to GO:0009705 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0032586
* Populated new object GO:0032587 (macro)
  * Changed name of GO:0032587 from "<new term>" to "ruffle membrane"
  * Set definition of GO:0032587 to "The portion of the plasma membrane surrounding a ruffle."
  * Added definition dbxref GOC:mah to GO:0032587
  * Added synonym "membrane ruffle" to GO:0032587
  * Copied GO:0032587 to GO:0031253 with type OBO_REL:is_a
  * Copied GO:0032587 to GO:0031256 with type OBO_REL:is_a
  * Copied GO:0032587 to GO:0001726 with type part_of
  * Assigned namespace "cellular_component" to GO:0032587
* Populated new object GO:0032588 (macro)
  * Changed name of GO:0032588 from "<new term>" to "trans-Golgi network membrane"
  * Set definition of GO:0032588 to "The lipid bilayer surrounding any of the compartments that make up the trans-Golgi network."
  * Added definition dbxref GOC:mah to GO:0032588
  * Added synonym "Golgi trans face membrane" to GO:0032588
  * Added synonym "trans Golgi network membrane" to GO:0032588
  * Changed synonym scope of GO:0032588 from "Related" to "Exact"
  * Copied GO:0032588 to GO:0000139 with type OBO_REL:is_a
  * Copied GO:0032588 to GO:0005802 with type part_of
  * Assigned namespace "cellular_component" to GO:0032588
* Populated new object GO:0032589 (macro)
  * Changed name of GO:0032589 from "<new term>" to "neuron projection membrane"
  * Set definition of GO:0032589 to "The portion of the plasma membrane surrounding a neuron projection."
  * Added definition dbxref GOC:mah to GO:0032589
  * Copied GO:0032589 to GO:0031253 with type OBO_REL:is_a
  * Copied GO:0032589 to GO:0031256 with type OBO_REL:is_a
  * Copied GO:0032589 to GO:0043005 with type part_of
  * Assigned namespace "cellular_component" to GO:0032589
* Populated new object GO:0032590 (macro)
  * Changed name of GO:0032590 from "<new term>" to "dendrite membrane"
  * Set definition of GO:0032590 to "The portion of the plasma membrane surrounding a dendrite."
  * Added definition dbxref GOC:mah to GO:0032590
  * Copied GO:0032590 to GO:0032589 with type OBO_REL:is_a
  * Copied GO:0032590 to GO:0031256 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0032590
* Populated new object GO:0032591 (macro)
  * Changed name of GO:0032591 from "<new term>" to "dendritic spine membrane"
  * Set definition of GO:0032591 to "The portion of the plasma membrane surrounding a dendritic spine."
  * Added definition dbxref GOC:mah to GO:0032591
  * Copied GO:0032591 to GO:0031256 with type OBO_REL:is_a
  * Copied GO:0032591 to GO:0043197 with type part_of
  * Copied GO:0032591 to GO:0032589 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0032591
* Populated new object GO:0032592 (macro)
  * Changed name of GO:0032592 from "<new term>" to "integral to mitochodrial membrane"
  * Set definition of GO:0032592 to "Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the mitochondrial membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer."
  * Added definition dbxref GOC:mah to GO:0032592
  * Copied GO:0032592 to GO:0031301 with type OBO_REL:is_a
  * Copied GO:0032592 to GO:0031228 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0032592
* Added synonym "uropodium" to GO:0001931
* Changed synonym scope of GO:0001931 from "Related" to "Exact"
* Changed definition of GO:0005639 from "Penetrating at least one phospholipid bilayer of the nuclear inner membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer." to "Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the nuclear inner membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer."
* Added synonym "plasmalogen biosynthetic process" to GO:0008611
* Changed synonym scope of GO:0008611 from "Related" to "Narrow"
* Changed definition of GO:0009288 from "A 20 nm diameter filament composed of subunits of flagellin driven passively at its base by a motor powered by the transmembrane proton potential." to "A motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope."
* Deleted definition dbxref GOC:ma from GO:0009288
* Deleted definition dbxref ISBN:0914826859 from GO:0009288
* Added definition dbxref GOC:jh2 to GO:0009288
* Added definition dbxref PMID:7787060 to GO:0009288
* Changed definition of GO:0030173 from "Penetrating at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer." to "Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer."
* Changed synonym scope of GO:0030173 from "Exact" to "Related"
* Copied GO:0030673 to GO:0032589 with type OBO_REL:is_a
* Changed definition of GO:0031165 from "Penetrating at least one phospholipid bilayer of the contractile vacuolar membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer." to "Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the contractile vacuolar membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer."
* Changed definition of GO:0031166 from "Penetrating at least one phospholipid bilayer of the vacuolar membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer." to "Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the vacuolar membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer."
* Changed definition of GO:0031224 from "Located in a membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in a membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031226 from "Located in the plasma membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in the plasma membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031227 from "Located in the endoplasmic reticulum membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in the endoplasmic reticulum membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031228 from "Located in the Golgi membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in the Golgi membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031229 from "Located in the nuclear inner membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in the nuclear inner membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031230 from "Located in the cell outer membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in the cell outer membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031231 from "Located in the peroxisomal membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in the peroxisomal membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031233 from "Located in the plasma membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane, with the bulk of the gene product located on the side opposite to the side that faces the cytoplasm." to "Located in the plasma membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane, with the bulk of the gene product located on the side opposite to the side that faces the cytoplasm."
* Changed definition of GO:0031235 from "Located in the plasma membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane, with the bulk of the gene product located on the side that faces the cytoplasm." to "Located in the plasma membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane, with the bulk of the gene product located on the side that faces the cytoplasm."
* Changed definition of GO:0031237 from "Located in the plasma membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane, with the bulk of the gene product located in the periplasmic space." to "Located in the plasma membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane, with the bulk of the gene product located in the periplasmic space."
* Changed definition of GO:0031243 from "Located in the outer membrane of the cell such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane, with the bulk of the gene product located on the side opposite to the side that faces the periplasm." to "Located in the outer membrane of the cell such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane, with the bulk of the gene product located on the side opposite to the side that faces the periplasm."
* Changed definition of GO:0031246 from "Located in the outer membrane of the cell such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane, with the bulk of the gene product located on the side that faces the periplasm." to "Located in the outer membrane of the cell such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane, with the bulk of the gene product located on the side that faces the periplasm."
* Added synonym "uropodium membrane" to GO:0031259
* Changed synonym scope of GO:0031259 from "Related" to "Exact"
* Changed definition of GO:0031300 from "Located in an organelle membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in an organelle membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031302 from "Located in the endosome membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in the endosome membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031303 from "Penetrating at least one phospholipid bilayer of the endosome membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer." to "Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the endosome membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer."
* Changed definition of GO:0031304 from "Located in the mitochondrial inner membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in the mitochondrial inner membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031305 from "Penetrating at least one phospholipid bilayer of the mitochondrial inner membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer." to "Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the mitochondrial inner membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer."
* Deleted GO:0031305 --OBO_REL:is_a--> GO:0031301
* Copied GO:0031305 to GO:0032592 with type OBO_REL:is_a
* Changed definition of GO:0031306 from "Located in the mitochondrial outer membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in the mitochondrial outer membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Copied GO:0031306 to GO:0005741 with type part_of
* Changed definition of GO:0031307 from "Penetrating at least one phospholipid bilayer of the mitochondrial outer membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer." to "Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the mitochondrial outer membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer."
* Deleted GO:0031307 --OBO_REL:is_a--> GO:0031301
* Copied GO:0031307 to GO:0032592 with type OBO_REL:is_a
* Changed definition of GO:0031308 from "Located in the nuclear outer membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in the nuclear outer membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031309 from "Penetrating at least one phospholipid bilayer of the nuclear outer membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer." to "Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the nuclear outer membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer."
* Changed definition of GO:0031310 from "Located in the vacuolar membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in the vacuolar membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031311 from "Located in the contractile vacuolar membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in the contractile vacuolar membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031350 from "Located in a plastid membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in a plastid membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031352 from "Located in a plastid inner membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in a plastid inner membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031354 from "Located in a plastid outer membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in a plastid outer membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031356 from "Located in the chloroplast inner membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in the chloroplast inner membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031357 from "Penetrating at least one phospholipid bilayer of the chloroplast inner membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer." to "Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the chloroplast inner membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer."
* Changed definition of GO:0031358 from "Located in the chloroplast outer membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in the chloroplast outer membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Changed definition of GO:0031359 from "Penetrating at least one phospholipid bilayer of the chloroplast outer membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer." to "Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the chloroplast outer membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer."
* Changed definition of GO:0031360 from "Located in a thylakoid membrane such that some covalently attached portion of the gene product spans or is embedded in one or both leaflets of the membrane." to "Located in a thylakoid membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane."
* Copied GO:0033108 to GO:0007005 with type part_of
* Deleted synonym "<new synonym>" from GO:0043842
* Changed definition of GO:0045203 from "Penetrating at least one phospholipid bilayer of the external outer membrane of the cell. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer." to "Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the external outer membrane of the cell. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer."
* Added synonym "plasmalogen metabolic process" to GO:0046485
* Changed synonym scope of GO:0046485 from "Related" to "Narrow"