[Go-diff] GO update 04/04/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_edit.obo version 5.750 by 5.751

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0060231
* Populated new object GO:0060231 (macro)
  * Changed name of GO:0060231 from "<new term>" to "mesenchymal to epithelial transition"
  * Set definition of GO:0060231 to "A transition where a mesenchymal cell establishes apical/basolateral polarity,forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell."
  * Added definition dbxref GOC:dph to GO:0060231
  * Added synonym "mesenchymal-epithelial transition" to GO:0060231
  * Added general dbxref GOC:dph to synonym mesenchymal-epithelial transition of GO:0060231
  * Changed synonym scope of GO:0060231 from "Related" to "Exact"
  * Copied GO:0060231 to GO:0002064 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060231
* Changed definition of GO:0003008 from "A biological process, occurring at the level of an organ system pertinent to the function of the organism. An organ system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process." to "A multicellular organismal process carried out by any of the organs or tissues in an organ system. An organ system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a biological objective."
* Changed definition of GO:0003013 from "The biological processes, occurring at the level of the circulatory system. The circulatory system is an organ system that moves extracellular fluids to and from tissue within a multicellular organism." to "A organ system process carried out by any of the organs or tissues of the circulatory system. The circulatory system is an organ system that moves extracellular fluids to and from tissue within a multicellular organism."
* Changed definition of GO:0003014 from "The biological processes, occurring at the level of the renal system. The renal system is responsible for fluid volume regulation and detoxification in an organism." to "A organ system process carried out by any of the organs or tissues of the renal system. The renal system is responsible for fluid volume regulation and detoxification in an organism."
* Changed definition of GO:0003015 from "The biological processes, occurring at the level of the heart. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood." to "A circulatory system process carried out by the heart. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood."
* Changed definition of GO:0003016 from "The biological processes, occurring at the level of the resiratory system. The respiratory system is an organ system responsible for respiratory gasseous exchange." to "A organ system process carried out by any of the organs or tissues of the respiratory system. The respiratory system is an organ system responsible for respiratory gasseous exchange."
* Copied GO:0007611 to GO:0032501 with type OBO_REL:is_a
* Copied GO:0007632 to GO:0032501 with type OBO_REL:is_a
* Deleted GO:0010467 --OBO_REL:is_a--> GO:0008150
* Copied GO:0010467 to GO:0009987 with type OBO_REL:is_a
* Deleted GO:0010468 --OBO_REL:is_a--> GO:0050789
* Copied GO:0010468 to GO:0050794 with type OBO_REL:is_a
* Changed name of GO:0010531 from "activation of JAK1 protein" to "activation of JAK1 kinase activity"
* Added synonym "activation of JAK1 protein" to GO:0010531
* Added general dbxref GOC:tb to synonym activation of JAK1 protein of GO:0010531
* Added general dbxref GOC:dph to synonym activation of JAK1 protein of GO:0010531
* Changed synonym scope of GO:0010531 from "Related" to "Exact"
* Changed name of GO:0010532 from "regulation of activation of JAK1 protein" to "regulation of activation of JAK1 kinase activity"
* Added synonym "regulation of activation of JAK1 protein" to GO:0010532
* Added general dbxref GOC:tb to synonym regulation of activation of JAK1 protein of GO:0010532
* Added general dbxref GOC:dph to synonym regulation of activation of JAK1 protein of GO:0010532
* Changed synonym scope of GO:0010532 from "Related" to "Exact"
* Changed name of GO:0010533 from "regulation of activation of JAK protein" to "regulation of activation of Janus kinase activity"
* Added synonym "regulation of activation of JAK protein" to GO:0010533
* Added general dbxref GOC:tb to synonym regulation of activation of JAK protein of GO:0010533
* Added general dbxref GOC:dph to synonym regulation of activation of JAK protein of GO:0010533
* Changed synonym scope of GO:0010533 from "Related" to "Exact"
* Changed name of GO:0010534 from "regulation of activation of JAK2 protein" to "regulation of activation of JAK2 kinase activity"
* Added synonym "regulation of activation of JAK2 protein" to GO:0010534
* Added general dbxref GOC:tb to synonym regulation of activation of JAK2 protein of GO:0010534
* Added general dbxref GOC:dph to synonym regulation of activation of JAK2 protein of GO:0010534
* Changed synonym scope of GO:0010534 from "Related" to "Exact"
* Changed name of GO:0010535 from "positive regulation of activation of JAK2 protein" to "positive regulation of activation of JAK2 kinase activity"
* Added synonym "positive regulation of activation of JAK2 protein" to GO:0010535
* Added general dbxref GOC:tb to synonym positive regulation of activation of JAK2 protein of GO:0010535
* Added general dbxref GOC:dph to synonym positive regulation of activation of JAK2 protein of GO:0010535
* Changed synonym scope of GO:0010535 from "Related" to "Exact"
* Deleted GO:0010535 --OBO_REL:is_a--> GO:0050731
* Changed name of GO:0010536 from "positive regulation of activation of JAK protein" to "positive regulation of activation of Janus kinase activity"
* Added synonym "positive regulation of activation of JAK protein" to GO:0010536
* Added general dbxref GOC:tb to synonym positive regulation of activation of JAK protein of GO:0010536
* Added general dbxref GOC:dph to synonym positive regulation of activation of JAK protein of GO:0010536
* Changed synonym scope of GO:0010536 from "Related" to "Exact"
* Changed name of GO:0010537 from "positive regulation of activation of JAK1 protein" to "positive regulation of activation of JAK1 kinase activity"
* Added synonym "positive regulation of activation of JAK1 protein" to GO:0010537
* Added general dbxref GOC:tb to synonym positive regulation of activation of JAK1 protein of GO:0010537
* Added general dbxref GOC:dph to synonym positive regulation of activation of JAK1 protein of GO:0010537
* Changed synonym scope of GO:0010537 from "Related" to "Exact"
* Copied GO:0030534 to GO:0032501 with type OBO_REL:is_a
* Copied GO:0030537 to GO:0032501 with type OBO_REL:is_a
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"
* Copied GO:0035187 to GO:0032501 with type OBO_REL:is_a
* Changed name of GO:0042976 from "activation of JAK protein" to "activation of Janus kinase activity"
* Added synonym "activation of JAK protein" to GO:0042976
* Added general dbxref GOC:tb to synonym activation of JAK protein of GO:0042976
* Added general dbxref GOC:dph to synonym activation of JAK protein of GO:0042976
* Changed synonym scope of GO:0042976 from "Related" to "Exact"
* Changed name of GO:0042977 from "activation of JAK2 protein" to "activation of JAK2 kinase activity"
* Added synonym "activation of JAK2 protein" to GO:0042977
* Added general dbxref GOC:tb to synonym activation of JAK2 protein of GO:0042977
* Added general dbxref GOC:dph to synonym activation of JAK2 protein of GO:0042977
* Changed synonym scope of GO:0042977 from "Related" to "Exact"
* Changed definition of GO:0050877 from "The processes pertaining to the functions of the nervous system of an organism." to "A organ system process carried out by any of the organs or tissues of neurological system."