[Go-diff] GO update 04/14/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.29 by 1.32

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0060235
* Populated new object GO:0060235 (macro)
  * Changed name of GO:0060235 from "<new term>" to "lens induction in camera-type eye"
  * Set definition of GO:0060235 to "Signaling at short range between the head ectoderm and the optic vesicle that results in the head ectoderm forming a lens."
  * Added definition dbxref GOC:dph to GO:0060235
  * Added definition dbxref ISBN:0878932437 to GO:0060235
  * Copied GO:0060235 to GO:0002089 with type part_of
  * Copied GO:0060235 to GO:0031128 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060235
* Deleted GO:0000335 --OBO_REL:is_a--> GO:0045910
* Deleted GO:0000336 --OBO_REL:is_a--> GO:0045911
* Deleted GO:0002652 --OBO_REL:is_a--> GO:0002819
* Changed definition of GO:0006099 from "A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two C02 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle." to "A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle."
* Deleted GO:0007096 --OBO_REL:is_a--> GO:0010564
* Changed definition of GO:0007292 from "The complete process of formation and maturation of an ovum or female gamete from a primordial female germ cell." to "Generation of the female gamete; specialised haploid cells produced by meiosis and along with a male gamete takes part in sexual reproduction."
* Added definition dbxref GOC:dph to GO:0007292
* Deleted GO:0010503 --OBO_REL:is_a--> GO:0032108
* Deleted GO:0010520 --OBO_REL:is_a--> GO:0010564
* Deleted GO:0019787 --OBO_REL:is_a--> GO:0003824
* Deleted GO:0030071 --OBO_REL:is_a--> GO:0010564
* Deleted GO:0032430 --OBO_REL:is_a--> GO:0060193
* Deleted GO:0032884 --OBO_REL:is_a--> GO:0051128
* Deleted synonym "cyclohexadienyl dehydrogenase activity" from GO:0033731
* Deleted synonym "ribonuclease U2 activity" from GO:0033899
* Deleted GO:0034091 --OBO_REL:is_a--> GO:0010564
* Changed definition of GO:0034400 from "A plastid found in senescing, formerly green tissues that is derived from a chloroplast that undergoes an organized developmental  program of senescence." to "A plastid found in senescing, formerly green tissues that is derived from a chloroplast that undergoes an organized developmental program of senescence."
* Changed definition of GO:0034403 from "Recognition of both the 5' and 3'-splice sites and
positioning them in the correct alignment with respect to each other so that the second catalytic step of nuclear mRNA splicing can occur." to "Recognition of both the 5' and 3'-splice sites and positioning them in the correct alignment with respect to each other so that the second catalytic step of nuclear mRNA splicing can occur."
* Deleted GO:0042627 --part_of--> GO:0005615
* Deleted synonym "vitamin B6 metabolic process" from GO:0042818
* Deleted synonym "vitamin B6 metabolism" from GO:0042818
* Deleted GO:0043286 --OBO_REL:is_a--> GO:0009889
* Deleted GO:0043504 --part_of--> GO:0000002
* Deleted GO:0045212 --OBO_REL:is_a--> GO:0009059
* Deleted GO:0045936 --OBO_REL:is_a--> GO:0031324
* Deleted GO:0045937 --OBO_REL:is_a--> GO:0031325
* Deleted GO:0046017 --OBO_REL:is_a--> GO:0022402
* Deleted GO:0046020 --OBO_REL:is_a--> GO:0000122
* Deleted GO:0046021 --OBO_REL:is_a--> GO:0022402
* Deleted GO:0046023 --OBO_REL:is_a--> GO:0022402
* Deleted GO:0046599 --OBO_REL:is_a--> GO:0010564
* Deleted GO:0048135 --part_of--> GO:0007292
* Copied GO:0048135 to GO:0048477 with type part_of
* Changed definition of GO:0048232 from "Generation of the male gamete; specialised haploid cells produced by meiosis and involved in sexual reproduction." to "Generation of the male gamete; specialised haploid cells produced by meiosis and along with a female gamete takes part in sexual reproduction."
* Added definition dbxref GOC:dph to GO:0048232