[Go-diff] GO update 04/15/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Tue Apr 15 21:30:46 PDT 2008


OBODIFF of gene_ontology_write.obo version 1.32 by 1.33

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034404
* Populated new object GO:0034404 (macro)
  * Changed name of GO:0034404 from "<new term>" to "nucleobase, nucleoside and nucleotide biosynthetic process"
  * Set definition of GO:0034404 to "The chemical reactions and pathways resulting in the formation of nucleobases, nucleosides and nucleotides."
  * Added definition dbxref GOC:mah to GO:0034404
  * Added synonym "nucleobase, nucleoside and nucleotide anabolism" to GO:0034404
  * Changed synonym scope of GO:0034404 from "Related" to "Exact"
  * Added synonym "nucleobase, nucleoside and nucleotide biosynthesis" to GO:0034404
  * Changed synonym scope of GO:0034404 from "Related" to "Exact"
  * Added synonym "nucleobase, nucleoside and nucleotide formation" to GO:0034404
  * Changed synonym scope of GO:0034404 from "Related" to "Exact"
  * Added synonym "nucleobase, nucleoside and nucleotide synthesis" to GO:0034404
  * Changed synonym scope of GO:0034404 from "Related" to "Exact"
  * Copied GO:0034404 to GO:0055086 with type OBO_REL:is_a
  * Copied GO:0034404 to GO:0044249 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034404
* Added synonym "MAPK signaling" to GO:0000165
* Added synonym "MAPK signalling" to GO:0000165
* Added synonym "MAPK activation" to GO:0000187
* Changed synonym scope of GO:0000187 from "Related" to "Exact"
* Copied GO:0006350 to GO:0043284 with type OBO_REL:is_a
* Added synonym "signaling cascade" to GO:0007165
* Changed synonym scope of GO:0007165 from "Related" to "Exact"
* Added synonym "signalling cascade" to GO:0007165
* Changed synonym scope of GO:0007165 from "Related" to "Exact"
* Copied GO:0009117 to GO:0034404 with type OBO_REL:is_a
* Copied GO:0009163 to GO:0034404 with type OBO_REL:is_a
* Changed definition of GO:0031214 from "Formation of hard tissues that consist mainly of norganic compounds, and also contain a small amounts of organic matrices that are believed to play important roles in their formation." to "Formation of hard tissues that consist mainly of inorganic compounds, and also contain a small amounts of organic matrices that are believed to play important roles in their formation."
* Added synonym "mineralization" to GO:0031214
* Changed synonym scope of GO:0031214 from "Related" to "Exact"
* Deleted definition dbxref PUBMED:15355794 from GO:0042475
* Added definition dbxref PMID:15355794 to GO:0042475
* Deleted definition dbxref PUBMED:15355794 from GO:0042487
* Added definition dbxref PMID:15355794 to GO:0042487
* Deleted definition dbxref PUBMED:15355794 from GO:0042488
* Added definition dbxref PMID:15355794 to GO:0042488
* Deleted definition dbxref PUBMED:15355794 from GO:0042489
* Added definition dbxref PMID:15355794 to GO:0042489
* Copied GO:0046112 to GO:0034404 with type OBO_REL:is_a
* Added synonym "NF-kappaB activation" to GO:0051092
* Changed synonym scope of GO:0051092 from "Related" to "Exact"
* Added synonym "nucleobase, nucleoside and nucleotide metabolism" to GO:0055086
* Changed synonym scope of GO:0055086 from "Related" to "Exact"


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