[Go-diff] GO update 04/16/2008

Wed Apr 16 21:30:46 PDT 2008

OBODIFF of gene_ontology_write.obo version 1.33 by 1.37

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034405
* Created object of type obo:TERM with id GO:0055117
* Created object of type obo:TERM with id GO:0055118
* Created object of type obo:TERM with id GO:0055119
* Populated new object GO:0034405 (macro)
  * Changed name of GO:0034405 from "<new term>" to "response to fluid shear stress"
  * Set definition of GO:0034405 to "A change in state or activity of a cell or an organism
(in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluid shear stress stimulus. Fluid shear stress is the force acting on an object in a system where the fluid is moving across a solid surface."
  * Added definition dbxref GOC:sl to GO:0034405
  * Copied GO:0034405 to GO:0006950 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034405
* Populated new object GO:0055117 (macro)
  * Changed name of GO:0055117 from "<new term>" to "regulation of cardiac muscle contraction"
  * Set definition of GO:0055117 to "Any process that modulates the frequency, rate or extent of cardiac muscle contraction."
  * Added definition dbxref GOC:ed to GO:0055117
  * Copied GO:0055117 to GO:0006937 with type OBO_REL:is_a
  * Copied GO:0055117 to GO:0060048 with type part_of
  * Assigned namespace "biological_process" to GO:0055117
* Populated new object GO:0055118 (macro)
  * Changed name of GO:0055118 from "<new term>" to "negative regulation of cardiac muscle contraction"
  * Set definition of GO:0055118 to "Any process that stops, prevents or reduces the frequency, rate or extent of cardiac muscle contraction."
  * Added definition dbxref GOC:ed to GO:0055118
  * Copied GO:0055118 to GO:0045932 with type OBO_REL:is_a
  * Copied GO:0055118 to GO:0055117 with type OBO_REL:is_a
  * Copied GO:0055118 to GO:0060048 with type negatively_regulates
  * Assigned namespace "biological_process" to GO:0055118
* Populated new object GO:0055119 (macro)
  * Changed name of GO:0055119 from "<new term>" to "relaxation of cardiac muscle"
  * Set definition of GO:0055119 to "The process whereby the extent of cardiac muscle contraction is reduced."
  * Added definition dbxref GOC:ed to GO:0055119
  * Copied GO:0055119 to GO:0055118 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0055119
* Deleted GO:0000384 --OBO_REL:is_a--> GO:0000385
* Copied GO:0000384 to GO:0031202 with type OBO_REL:is_a
* Deleted GO:0000385 --OBO_REL:is_a--> GO:0003824
* Deleted GO:0000384 --OBO_REL:is_a--> GO:0000385
* Deleted GO:0000386 --OBO_REL:is_a--> GO:0000385
* Destroyed object GO:0000385
* Deleted GO:0000386 --OBO_REL:is_a--> GO:0000385
* Copied GO:0000386 to GO:0031202 with type OBO_REL:is_a
* Deleted synonym "AATK" from GO:0004714
* Deleted synonym "AATYK" from GO:0004714
* Deleted synonym "AATYK2" from GO:0004714
* Deleted synonym "AATYK3" from GO:0004714
* Deleted synonym "ACH" from GO:0004714
* Deleted synonym "ALK" from GO:0004714
* Deleted synonym "ARK" from GO:0004714
* Deleted synonym "AXL" from GO:0004714
* Deleted synonym "Bek" from GO:0004714
* Deleted synonym "bfgfr" from GO:0004714
* Deleted synonym "BRT" from GO:0004714
* Deleted synonym "Bsk" from GO:0004714
* Deleted synonym "C-FMS" from GO:0004714
* Deleted synonym "CAK" from GO:0004714
* Deleted synonym "CCK4" from GO:0004714
* Deleted synonym "CD115" from GO:0004714
* Deleted synonym "CD135" from GO:0004714
* Deleted synonym "CDw135" from GO:0004714
* Deleted synonym "Cek1" from GO:0004714
* Deleted synonym "Cek10" from GO:0004714
* Deleted synonym "Cek11" from GO:0004714
* Deleted synonym "Cek2" from GO:0004714
* Deleted synonym "Cek3" from GO:0004714
* Deleted synonym "Cek5" from GO:0004714
* Deleted synonym "Cek6" from GO:0004714
* Deleted synonym "Cek7" from GO:0004714
* Deleted synonym "CFD1" from GO:0004714
* Deleted synonym "CKIT" from GO:0004714
* Deleted synonym "CSF1R" from GO:0004714
* Deleted synonym "DAlk" from GO:0004714
* Deleted synonym "DDR1" from GO:0004714
* Deleted synonym "DDR2" from GO:0004714
* Deleted synonym "Dek" from GO:0004714
* Deleted synonym "DKFZp434C1418" from GO:0004714
* Deleted synonym "DRT" from GO:0004714
* Deleted synonym "DTK" from GO:0004714
* Deleted synonym "Ebk" from GO:0004714
* Deleted synonym "ECK" from GO:0004714
* Deleted synonym "EDDR1" from GO:0004714
* Deleted synonym "Eek" from GO:0004714
* Deleted synonym "EGFR" from GO:0004714
* Deleted synonym "Ehk2" from GO:0004714
* Deleted synonym "Ehk3" from GO:0004714
* Deleted synonym "Elk" from GO:0004714
* Deleted synonym "EPH" from GO:0004714
* Deleted synonym "EPHA1" from GO:0004714
* Deleted synonym "EPHA2" from GO:0004714
* Deleted synonym "EPHA6" from GO:0004714
* Deleted synonym "EPHA7" from GO:0004714
* Deleted synonym "EPHA8" from GO:0004714
* Deleted synonym "EPHB1" from GO:0004714
* Deleted synonym "EPHB2" from GO:0004714
* Deleted synonym "EPHB3" from GO:0004714
* Deleted synonym "EPHB4" from GO:0004714
* Deleted synonym "EphB5" from GO:0004714
* Deleted synonym "EPHT" from GO:0004714
* Deleted synonym "EPHT2" from GO:0004714
* Deleted synonym "EPHT3" from GO:0004714
* Deleted synonym "EPHX" from GO:0004714
* Deleted synonym "ERBB" from GO:0004714
* Deleted synonym "ERBB1" from GO:0004714
* Deleted synonym "ERBB2" from GO:0004714
* Deleted synonym "ERBB3" from GO:0004714
* Deleted synonym "ERBB4" from GO:0004714
* Deleted synonym "ERK" from GO:0004714
* Deleted synonym "Eyk" from GO:0004714
* Deleted synonym "FGFR1" from GO:0004714
* Deleted synonym "FGFR2" from GO:0004714
* Deleted synonym "FGFR3" from GO:0004714
* Deleted synonym "FGFR4" from GO:0004714
* Deleted synonym "FLG" from GO:0004714
* Deleted synonym "FLK1" from GO:0004714
* Deleted synonym "FLK2" from GO:0004714
* Deleted synonym "FLT1" from GO:0004714
* Deleted synonym "FLT2" from GO:0004714
* Deleted synonym "FLT3" from GO:0004714
* Deleted synonym "FLT4" from GO:0004714
* Deleted synonym "FMS" from GO:0004714
* Deleted synonym "Fv2" from GO:0004714
* Deleted synonym "HBGFR" from GO:0004714
* Deleted synonym "HEK11" from GO:0004714
* Deleted synonym "HEK2" from GO:0004714
* Deleted synonym "HEK3" from GO:0004714
* Deleted synonym "HEK5" from GO:0004714
* Deleted synonym "HEK6" from GO:0004714
* Deleted synonym "HEP" from GO:0004714
* Deleted synonym "HER2" from GO:0004714
* Deleted synonym "HER3" from GO:0004714
* Deleted synonym "HER4" from GO:0004714
* Deleted synonym "HGFR" from GO:0004714
* Deleted synonym "HSCR1" from GO:0004714
* Deleted synonym "HTK" from GO:0004714
* Deleted synonym "IGF1R" from GO:0004714
* Deleted synonym "INSR" from GO:0004714
* Deleted synonym "INSRR" from GO:0004714
* Deleted synonym "IR" from GO:0004714
* Deleted synonym "IRR" from GO:0004714
* Deleted synonym "JTK12" from GO:0004714
* Deleted synonym "JTK13" from GO:0004714
* Deleted synonym "JTK14" from GO:0004714
* Deleted synonym "JWS" from GO:0004714
* Deleted synonym "K-SAM" from GO:0004714
* Deleted synonym "KDR" from GO:0004714
* Deleted synonym "KGFR" from GO:0004714
* Deleted synonym "KIA0641" from GO:0004714
* Deleted synonym "KIAA1079" from GO:0004714
* Deleted synonym "KIAA1459" from GO:0004714
* Deleted synonym "Kil" from GO:0004714
* Deleted synonym "Kin15" from GO:0004714
* Deleted synonym "Kin16" from GO:0004714
* Deleted synonym "KIT" from GO:0004714
* Deleted synonym "KLG" from GO:0004714
* Deleted synonym "LTK" from GO:0004714
* Deleted synonym "MCF3" from GO:0004714
* Deleted synonym "Mdk1" from GO:0004714
* Deleted synonym "Mdk2" from GO:0004714
* Deleted synonym "Mdk5" from GO:0004714
* Deleted synonym "MEhk1" from GO:0004714
* Deleted synonym "MEN2A/B" from GO:0004714
* Deleted synonym "Mep" from GO:0004714
* Deleted synonym "MER" from GO:0004714
* Deleted synonym "MERTK" from GO:0004714
* Deleted synonym "MET" from GO:0004714
* Deleted synonym "Mlk1" from GO:0004714
* Deleted synonym "Mlk2" from GO:0004714
* Deleted synonym "Mrk" from GO:0004714
* Deleted synonym "MST1R" from GO:0004714
* Deleted synonym "MTC1" from GO:0004714
* Deleted synonym "MUSK" from GO:0004714
* Deleted synonym "Myk1" from GO:0004714
* Deleted synonym "N-SAM" from GO:0004714
* Deleted synonym "NEP" from GO:0004714
* Deleted synonym "NET" from GO:0004714
* Deleted synonym "Neu" from GO:0004714
* Deleted synonym "NGL" from GO:0004714
* Deleted synonym "NOK" from GO:0004714
* Deleted synonym "nork" from GO:0004714
* Deleted synonym "Nsk2" from GO:0004714
* Deleted synonym "NTRK1" from GO:0004714
* Deleted synonym "NTRK2" from GO:0004714
* Deleted synonym "NTRK3" from GO:0004714
* Deleted synonym "NTRK4" from GO:0004714
* Deleted synonym "NTRKR1" from GO:0004714
* Deleted synonym "NTRKR2" from GO:0004714
* Deleted synonym "NTRKR3" from GO:0004714
* Deleted synonym "Nuk" from GO:0004714
* Deleted synonym "NYK" from GO:0004714
* Deleted synonym "PCL" from GO:0004714
* Deleted synonym "PDGFR" from GO:0004714
* Deleted synonym "PDGFRA" from GO:0004714
* Deleted synonym "PDGFRB" from GO:0004714
* Deleted synonym "PHB6" from GO:0004714
* Deleted synonym "PTK" from GO:0004714
* Deleted synonym "PTK3" from GO:0004714
* Deleted synonym "PTK7" from GO:0004714
* Deleted synonym "RET" from GO:0004714
* Deleted synonym "RON" from GO:0004714
* Deleted synonym "ROR1" from GO:0004714
* Deleted synonym "ROR2" from GO:0004714
* Deleted synonym "ROS1" from GO:0004714
* Deleted synonym "RSE" from GO:0004714
* Deleted synonym "RTK" from GO:0004714
* Deleted synonym "RYK" from GO:0004714
* Deleted synonym "SEA" from GO:0004714
* Deleted synonym "Sek2" from GO:0004714
* Deleted synonym "Sek3" from GO:0004714
* Deleted synonym "Sek4" from GO:0004714
* Deleted synonym "Sfr" from GO:0004714
* Deleted synonym "SKY" from GO:0004714
* Deleted synonym "STK" from GO:0004714
* Deleted synonym "STK1" from GO:0004714
* Deleted synonym "TEK" from GO:0004714
* Deleted synonym "TIE" from GO:0004714
* Deleted synonym "TIE1" from GO:0004714
* Deleted synonym "TIE2" from GO:0004714
* Deleted synonym "TIF" from GO:0004714
* Deleted synonym "TKT" from GO:0004714
* Deleted synonym "TRK" from GO:0004714
* Deleted synonym "TRKA" from GO:0004714
* Deleted synonym "TRKB" from GO:0004714
* Deleted synonym "TRKC" from GO:0004714
* Deleted synonym "TRKE" from GO:0004714
* Deleted synonym "TYK1" from GO:0004714
* Deleted synonym "TYRO10" from GO:0004714
* Deleted synonym "tyro11" from GO:0004714
* Deleted synonym "TYRO3" from GO:0004714
* Deleted synonym "tyro5" from GO:0004714
* Deleted synonym "tyro6" from GO:0004714
* Deleted synonym "TYRO7" from GO:0004714
* Deleted synonym "UFO" from GO:0004714
* Deleted synonym "VEGFR1" from GO:0004714
* Deleted synonym "VEGFR2" from GO:0004714
* Deleted synonym "VEGFR3" from GO:0004714
* Deleted synonym "Vik" from GO:0004714
* Deleted synonym "YK1" from GO:0004714
* Deleted synonym "Yrk" from GO:0004714
* Deleted synonym "ABL" from GO:0004715
* Deleted synonym "ABL1" from GO:0004715
* Deleted synonym "ABL2" from GO:0004715
* Deleted synonym "ABLL" from GO:0004715
* Deleted synonym "ACK1" from GO:0004715
* Deleted synonym "ACK2" from GO:0004715
* Deleted synonym "AGMX1" from GO:0004715
* Deleted synonym "ARG" from GO:0004715
* Deleted synonym "ATK" from GO:0004715
* Deleted synonym "BLK" from GO:0004715
* Deleted synonym "Bmk" from GO:0004715
* Deleted synonym "BMX" from GO:0004715
* Deleted synonym "BRK" from GO:0004715
* Deleted synonym "Bsk" from GO:0004715
* Deleted synonym "BTK" from GO:0004715
* Deleted synonym "BTKL" from GO:0004715
* Deleted synonym "CAKb" from GO:0004715
* Deleted synonym "cdgip" from GO:0004715
* Deleted synonym "CHK" from GO:0004715
* Deleted synonym "CSK" from GO:0004715
* Deleted synonym "CTK" from GO:0004715
* Deleted synonym "CYL" from GO:0004715
* Deleted synonym "EMT" from GO:0004715
* Deleted synonym "ETK" from GO:0004715
* Deleted synonym "fadk" from GO:0004715
* Deleted synonym "FAK" from GO:0004715
* Deleted synonym "FAK2" from GO:0004715
* Deleted synonym "FER" from GO:0004715
* Deleted synonym "fert1/2" from GO:0004715
* Deleted synonym "FES" from GO:0004715
* Deleted synonym "FGR" from GO:0004715
* Deleted synonym "FPS" from GO:0004715
* Deleted synonym "FRK" from GO:0004715
* Deleted synonym "FYN" from GO:0004715
* Deleted synonym "HCK" from GO:0004715
* Deleted synonym "HCTK" from GO:0004715
* Deleted synonym "HYL" from GO:0004715
* Deleted synonym "IMD1" from GO:0004715
* Deleted synonym "ITK" from GO:0004715
* Deleted synonym "IYK" from GO:0004715
* Deleted synonym "JAK1" from GO:0004715
* Deleted synonym "JAK2" from GO:0004715
* Deleted synonym "JAK3" from GO:0004715
* Deleted synonym "JTK1" from GO:0004715
* Deleted synonym "JTK9" from GO:0004715
* Deleted synonym "L-JAK" from GO:0004715
* Deleted synonym "LCK" from GO:0004715
* Deleted synonym "LSK" from GO:0004715
* Deleted synonym "LYN" from GO:0004715
* Deleted synonym "MATK" from GO:0004715
* Deleted synonym "Ntk" from GO:0004715
* Deleted synonym "PKB" from GO:0004715
* Deleted synonym "PSCTK" from GO:0004715
* Deleted synonym "PSCTK1" from GO:0004715
* Deleted synonym "PSCTK2" from GO:0004715
* Deleted synonym "PSCTK4" from GO:0004715
* Deleted synonym "PSCTK5" from GO:0004715
* Deleted synonym "PTK2" from GO:0004715
* Deleted synonym "PTK2B" from GO:0004715
* Deleted synonym "PTK6" from GO:0004715
* Deleted synonym "PYK2" from GO:0004715
* Deleted synonym "RAFTK" from GO:0004715
* Deleted synonym "RAK" from GO:0004715
* Deleted synonym "Rlk" from GO:0004715
* Deleted synonym "Sik" from GO:0004715
* Deleted synonym "SLK" from GO:0004715
* Deleted synonym "SRC" from GO:0004715
* Deleted synonym "SRC2" from GO:0004715
* Deleted synonym "SRK" from GO:0004715
* Deleted synonym "SRM" from GO:0004715
* Deleted synonym "SRMS" from GO:0004715
* Deleted synonym "STD" from GO:0004715
* Deleted synonym "SYK" from GO:0004715
* Deleted synonym "SYN" from GO:0004715
* Deleted synonym "Tck" from GO:0004715
* Deleted synonym "TEC" from GO:0004715
* Deleted synonym "TNK1" from GO:0004715
* Deleted synonym "Tsk" from GO:0004715
* Deleted synonym "TXK" from GO:0004715
* Deleted synonym "TYK2" from GO:0004715
* Deleted synonym "TYK3" from GO:0004715
* Deleted synonym "YES1" from GO:0004715
* Deleted synonym "YK2" from GO:0004715
* Deleted synonym "ZAP70" from GO:0004715
* Copied GO:0006313 to GO:0006310 with type OBO_REL:is_a
* Deleted GO:0007041 --part_of--> GO:0007034
* Changed definition of GO:0008262 from "Interacting selectively with importin-alpha to mediate its transfer across the nuclear membrane to the cytoplasm." to "Interacting selectively with importin-alpha to mediate its transfer through the nuclear pore to the cytoplasm."
* Added definition dbxref GOC:vw to GO:0008262
* Copied GO:0008262 to GO:0008565 with type OBO_REL:is_a
* Changed name of GO:0010495 from "long-distance propagation of post-transcriptional gene silencing" to "long-distance posttranscriptional gene silencing"
* Changed definition of GO:0010495 from "Any process that leads to the transmission of post-transcriptional gene silencing from one tissue to another within an organism, or the transmission of post-transcriptional gene silencing between tissues of two organisms." to "A posttranscriptional gene silencing process in which the silencing signal originates in a tissue separate from the tissue in which the silencing takes place."
* Added definition dbxref GOC:dph to GO:0010495
* Added definition dbxref GOC:tb to GO:0010495
* Added synonym "long-distance propagation of posttranscriptional gene silencing" to GO:0010495
* Added general dbxref GOC:tb to synonym long-distance propagation of posttranscriptional gene silencing of GO:0010495
* Added general dbxref GOC:dph to synonym long-distance propagation of posttranscriptional gene silencing of GO:0010495
* Changed synonym scope of GO:0010495 from "Related" to "Exact"
* Deleted GO:0010495 --OBO_REL:is_a--> GO:0016458
* Deleted GO:0010495 --part_of--> GO:0016441
* Copied GO:0010495 to GO:0016441 with type OBO_REL:is_a
* Deleted GO:0016458 --OBO_REL:is_a--> GO:0006139
* Changed definition of GO:0030159 from "Functions to provide a physical suport for the assembly of a multiprotein receptor signaling complex." to "Functions to provide a physical support for the assembly of a multiprotein receptor signaling complex."
* added secondary id GO:0000385 to GO:0031202
* Added synonym "spliceosomal catalysis" to GO:0031202
* Changed synonym scope of GO:0031202 from "Related" to "Exact"
* Deleted GO:0031202 --OBO_REL:is_a--> GO:0003723
* Copied GO:0031202 to GO:0003824 with type OBO_REL:is_a
* Deleted GO:0032196 --OBO_REL:is_a--> GO:0006310
* Copied GO:0032196 to GO:0009987 with type OBO_REL:is_a