[Go-diff] GO update 04/18/2008
Remote CVS for Gene Ontology
gocvs at genome.stanford.edu
Fri Apr 18 21:30:45 PDT 2008
OBODIFF of gene_ontology_write.obo version 1.38 by 1.41
Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0000956
* Created object of type obo:TERM with id GO:0000957
* Created object of type obo:TERM with id GO:0000958
* Created object of type obo:TERM with id GO:0000959
* Created object of type obo:TERM with id GO:0000960
* Created object of type obo:TERM with id GO:0000961
* Created object of type obo:TERM with id GO:0000962
* Created object of type obo:TERM with id GO:0000963
* Created object of type obo:TERM with id GO:0000964
* Created object of type obo:TERM with id GO:0000965
* Created object of type obo:TERM with id GO:0000966
* Created object of type obo:TERM with id GO:0000967
* Created object of type obo:TERM with id GO:0010568
* Created object of type obo:TERM with id GO:0010569
* Created object of type obo:TERM with id GO:0010570
* Created object of type obo:TERM with id GO:0010571
* Created object of type obo:TERM with id GO:0010572
* Created object of type obo:TERM with id GO:0010573
* Created object of type obo:TERM with id GO:0010574
* Created object of type obo:TERM with id GO:0010575
* Created object of type obo:TERM with id GO:0034414
* Created object of type obo:TERM with id GO:0034415
* Populated new object GO:0000956 (macro)
* Changed name of GO:0000956 from "<new term>" to "nuclear-transcribed mRNA catabolic process"
* Set definition of GO:0000956 to "The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells."
* Added definition dbxref GOC:krc to GO:0000956
* Added synonym "nuclear mRNA breakdown" to GO:0000956
* Changed synonym scope of GO:0000956 from "Related" to "Exact"
* Added synonym "nuclear mRNA catabolism" to GO:0000956
* Changed synonym scope of GO:0000956 from "Related" to "Exact"
* Added synonym "nuclear mRNA degradation" to GO:0000956
* Changed synonym scope of GO:0000956 from "Related" to "Exact"
* Copied GO:0000956 to GO:0006402 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0000956
* Populated new object GO:0000957 (macro)
* Changed name of GO:0000957 from "<new term>" to "mitochondrial RNA catabolic process"
* Set definition of GO:0000957 to "The chemical reactions and pathways resulting in the breakdown of RNA within the mitochondrion."
* Added definition dbxref GOC:krc to GO:0000957
* Copied GO:0000957 to GO:0000959 with type OBO_REL:is_a
* Copied GO:0000957 to GO:0006401 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0000957
* Populated new object GO:0000958 (macro)
* Changed name of GO:0000958 from "<new term>" to "mitochondrial mRNA catabolic process"
* Set definition of GO:0000958 to "The chemical reactions and pathways resulting in the breakdown of mRNA within the mitochondrion."
* Added definition dbxref GOC:krc to GO:0000958
* Copied GO:0000958 to GO:0000957 with type OBO_REL:is_a
* Copied GO:0000958 to GO:0006402 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0000958
* Populated new object GO:0000959 (macro)
* Changed name of GO:0000959 from "<new term>" to "mitochondrial RNA metabolic process"
* Set definition of GO:0000959 to "The chemical reactions and pathways involving RNA in the mitochondrion."
* Added definition dbxref GOC:krc to GO:0000959
* Copied GO:0000959 to GO:0016070 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0000959
* Populated new object GO:0000960 (macro)
* Changed name of GO:0000960 from "<new term>" to "regulation of mitochondrial RNA catabolic process"
* Set definition of GO:0000960 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving catabolism of RNA within the mitochondrion."
* Added definition dbxref GOC:krc to GO:0000960
* Copied GO:0000960 to GO:0000957 with type regulates
* Copied GO:0000960 to GO:0051252 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0000960
* Populated new object GO:0000961 (macro)
* Changed name of GO:0000961 from "<new term>" to "negative regulation of mitochondrial RNA catabolic process"
* Set definition of GO:0000961 to "Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways involving catabolism of RNA within the mitochondrion."
* Added definition dbxref GOC:krc to GO:0000961
* Copied GO:0000961 to GO:0000960 with type OBO_REL:is_a
* Copied GO:0000961 to GO:0000957 with type negatively_regulates
* Assigned namespace "biological_process" to GO:0000961
* Populated new object GO:0000962 (macro)
* Changed name of GO:0000962 from "<new term>" to "positive regulation of mitochondrial RNA catabolic process"
* Set definition of GO:0000962 to "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving catabolism of RNA within the mitochondrion."
* Added definition dbxref GOC:krc to GO:0000962
* Copied GO:0000962 to GO:0000957 with type positively_regulates
* Copied GO:0000962 to GO:0000960 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0000962
* Populated new object GO:0000963 (macro)
* Changed name of GO:0000963 from "<new term>" to "mitochondrial RNA processing"
* Set definition of GO:0000963 to "The conversion of a primary RNA molecule transcribed from a mitochondrial genome into one or more mature RNA molecules."
* Added definition dbxref GOC:krc to GO:0000963
* Copied GO:0000963 to GO:0000959 with type OBO_REL:is_a
* Copied GO:0000963 to GO:0006396 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0000963
* Populated new object GO:0000964 (macro)
* Changed name of GO:0000964 from "<new term>" to "mitochondrial RNA 5'-end processing"
* Set definition of GO:0000964 to "Any process involved in forming the mature 5' end of an RNA molecule transcribed from a mitochondrial genome."
* Added definition dbxref GOC:krc to GO:0000964
* Added synonym "mitochondrial RNA 5' end processing" to GO:0000964
* Copied GO:0000964 to GO:0000963 with type OBO_REL:is_a
* Copied GO:0000964 to GO:0000966 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0000964
* Populated new object GO:0000965 (macro)
* Changed name of GO:0000965 from "<new term>" to "mitochondrial RNA 3'-end processing"
* Set definition of GO:0000965 to "Any process involved in forming the mature 3' end of an RNA molecule transcribed from a mitochondrial genome."
* Added definition dbxref GOC:krc to GO:0000965
* Added synonym "mitochondrial RNA 3' end processing" to GO:0000965
* Copied GO:0000965 to GO:0031123 with type OBO_REL:is_a
* Copied GO:0000965 to GO:0000963 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0000965
* Populated new object GO:0000966 (macro)
* Changed name of GO:0000966 from "<new term>" to "RNA 5'-end processing"
* Set definition of GO:0000966 to "Any process involved in forming the mature 5' end of an RNA molecule."
* Added definition dbxref GOC:krc to GO:0000966
* Added synonym "RNA 5' end processing" to GO:0000966
* Changed synonym scope of GO:0000966 from "Related" to "Exact"
* Copied GO:0000966 to GO:0006396 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0000966
* Populated new object GO:0000967 (macro)
* Changed name of GO:0000967 from "<new term>" to "rRNA 5'-end processing"
* Set definition of GO:0000967 to "Any process involved in forming the mature 5' end of an rRNA molecule."
* Added definition dbxref GOC:krc to GO:0000967
* Added synonym "rRNA 5'-end processing" to GO:0000967
* Changed synonym scope of GO:0000967 from "Related" to "Exact"
* Copied GO:0000967 to GO:0000966 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0000967
* Populated new object GO:0010568 (macro)
* Changed name of GO:0010568 from "<new term>" to "regulation of budding cell apical growth"
* Set definition of GO:0010568 to "Any process that modulates the frequency, rate or extent of growth at the tip of a bud, in a cell that reproduces by budding."
* Added definition dbxref GOC:dph to GO:0010568
* Added definition dbxref GOC:jp to GO:0010568
* Added definition dbxref GOC:tb to GO:0010568
* Added definition dbxref PMID:17417630 to GO:0010568
* Added general dbxref GOC:tb to GO:0010568
* Copied GO:0010568 to GO:0040008 with type OBO_REL:is_a
* Copied GO:0010568 to GO:0007118 with type regulates
* Copied GO:0010568 to GO:0050794 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0010568
* Populated new object GO:0010569 (macro)
* Changed name of GO:0010569 from "<new term>" to "regulation of double-strand break repair via homologous recombination"
* Set definition of GO:0010569 to "Any process that modulates the frequency, rate or extent of the error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences."
* Added definition dbxref GOC:dph to GO:0010569
* Added definition dbxref GOC:jp to GO:0010569
* Added definition dbxref GOC:tb to GO:0010569
* Copied GO:0010569 to GO:0006282 with type OBO_REL:is_a
* Copied GO:0010569 to GO:0000724 with type regulates
* Copied GO:0010569 to GO:0000018 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0010569
* Populated new object GO:0010570 (macro)
* Changed name of GO:0010570 from "<new term>" to "regulation of filamentous growth"
* Set definition of GO:0010570 to "Any process that modulates the frequency, rate or extent of the process by which a multicellular organism or a group of unicellular organisms grow in a threadlike, filamentous shape."
* Added definition dbxref GOC:dph to GO:0010570
* Added definition dbxref GOC:jp to GO:0010570
* Added definition dbxref GOC:tb to GO:0010570
* Copied GO:0010570 to GO:0030447 with type regulates
* Copied GO:0010570 to GO:0040008 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0010570
* Populated new object GO:0010571 (macro)
* Changed name of GO:0010571 from "<new term>" to "positive regulation of DNA replication during S phase"
* Set definition of GO:0010571 to "Any process that activates or increases the frequency, rate or extent of DNA replication during progression through S phase of the cell cycle."
* Added definition dbxref GOC:dph to GO:0010571
* Added definition dbxref GOC:jp to GO:0010571
* Added definition dbxref GOC:tb to GO:0010571
* Copied GO:0010571 to GO:0033260 with type positively_regulates
* Copied GO:0010571 to GO:0033262 with type OBO_REL:is_a
* Copied GO:0010571 to GO:0045740 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0010571
* Populated new object GO:0010572 (macro)
* Changed name of GO:0010572 from "<new term>" to "positive regulation of platelet activation"
* Set definition of GO:0010572 to "Any process that increases the rate or frequency of platelet activation. Platelet activation is a series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue."
* Added definition dbxref GOC:dph to GO:0010572
* Added definition dbxref GOC:sl to GO:0010572
* Added definition dbxref GOC:tb to GO:0010572
* Copied GO:0010572 to GO:0010543 with type OBO_REL:is_a
* Copied GO:0010572 to GO:0030168 with type positively_regulates
* Copied GO:0010572 to GO:0050867 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0010572
* Populated new object GO:0010573 (macro)
* Changed name of GO:0010573 from "<new term>" to "vascular endothelial growth factor production"
* Set definition of GO:0010573 to "The appearance of vascular endothelial growth factor production due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels."
* Added definition dbxref GOC:rl to GO:0010573
* Copied GO:0010573 to GO:0001816 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0010573
* Populated new object GO:0010574 (macro)
* Changed name of GO:0010574 from "<new term>" to "regulation of vascular endothelial growth factor production"
* Set definition of GO:0010574 to "Any process that modulates the frequency, rate, or extent of production of vascular endothelial growth factor."
* Added definition dbxref GOC:rl to GO:0010574
* Copied GO:0010574 to GO:0010573 with type regulates
* Assigned namespace "biological_process" to GO:0010574
* Populated new object GO:0010575 (macro)
* Changed name of GO:0010575 from "<new term>" to "positive regulation vascular endothelial growth factor production"
* Set definition of GO:0010575 to "Any process that increases or activates the frequency, rate, or extent of production of vascular endothelial growth factor."
* Added definition dbxref GOC:rl to GO:0010575
* Copied GO:0010575 to GO:0001819 with type OBO_REL:is_a
* Copied GO:0010575 to GO:0010574 with type OBO_REL:is_a
* Copied GO:0010575 to GO:0010573 with type positively_regulates
* Assigned namespace "biological_process" to GO:0010575
* Populated new object GO:0034414 (macro)
* Changed name of GO:0034414 from "<new term>" to "tRNA 3'-end cleavage, endonucleolytic"
* Set definition of GO:0034414 to "Endonucleolytic cleavage of the 3'-end of the pre-tRNA as part of the process of generating the mature 3'-end of the tRNA."
* Added definition dbxref GOC:mah to GO:0034414
* Added synonym "endonucleolytic tRNA 3'-end cleavage" to GO:0034414
* Changed synonym scope of GO:0034414 from "Related" to "Exact"
* Copied GO:0034414 to GO:0042779 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034414
* Populated new object GO:0034415 (macro)
* Changed name of GO:0034415 from "<new term>" to "tRNA 3'-end cleavage, exonucleolytic"
* Set definition of GO:0034415 to "Exonucleolytic cleavage of the 3'-end of the pre-tRNA as part of the process of generating the mature 3'-end of the tRNA."
* Added definition dbxref GOC:mah to GO:0034415
* Added synonym "exonucleolytic tRNA 3'-end cleavage" to GO:0034415
* Changed synonym scope of GO:0034415 from "Related" to "Exact"
* Copied GO:0034415 to GO:0042779 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034415
* Changed name of GO:0000184 from "mRNA catabolic process, nonsense-mediated decay" to "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay"
* Changed definition of GO:0000184 from "The nonsense-mediated mRNA decay pathway degrades mRNAs transcribed from genes in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins." to "The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins."
* Added definition dbxref GOC:krc to GO:0000184
* Removed GO:0000184 from category gosubset_prok
* Added synonym "nuclear mRNA catabolic process, nonsense-mediated decay" to GO:0000184
* Changed synonym scope of GO:0000184 from "Related" to "Exact"
* Deleted GO:0000184 --OBO_REL:is_a--> GO:0006402
* Copied GO:0000184 to GO:0000956 with type OBO_REL:is_a
* Changed name of GO:0000288 from "mRNA catabolic process, deadenylation-dependent decay" to "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay"
* Changed definition of GO:0000288 from "A major pathway of mRNA degradation, that proceeds through a series of ordered steps: poly(A) tail shortening, deadenylylation-dependent decapping, and decay of the transcript body, and that can regulate mRNA stability." to "A major pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of ordered steps: poly(A) tail shortening, deadenylylation-dependent decapping, and decay of the transcript body, and that can regulate mRNA stability."
* Removed GO:0000288 from category gosubset_prok
* Added synonym "nuclear mRNA catabolic process, deadenylation-dependent decay" to GO:0000288
* Changed synonym scope of GO:0000288 from "Related" to "Exact"
* Deleted GO:0000288 --OBO_REL:is_a--> GO:0006402
* Copied GO:0000288 to GO:0000956 with type OBO_REL:is_a
* Changed name of GO:0000289 from "poly(A) tail shortening" to "nuclear-transcribed mRNA poly(A) tail shortening"
* Changed definition of GO:0000289 from "Shortening of the poly(A) tail of an mRNA from full length to an oligo(A) length." to "Shortening of the poly(A) tail of a nuclear-transcribed mRNA from full length to an oligo(A) length."
* Added synonym "nuclear mRNA poly(A) tail shortening" to GO:0000289
* Deleted GO:0000289 --OBO_REL:is_a--> GO:0006402
* Copied GO:0000289 to GO:0000956 with type OBO_REL:is_a
* Changed name of GO:0000290 from "deadenylation-dependent decapping" to "deadenylation-dependent decapping of nuclear-transcribed mRNA"
* Changed definition of GO:0000290 from "Cleavage of the 5'-cap of an mRNA triggered by shortening of the poly(A) tail to below a minimum functional length." to "Cleavage of the 5'-cap of a nuclear mRNA triggered by shortening of the poly(A) tail to below a minimum functional length."
* Added synonym "deadenylation-dependent decapping of nuclear mRNA" to GO:0000290
* Changed synonym scope of GO:0000290 from "Related" to "Exact"
* Deleted GO:0000290 --OBO_REL:is_a--> GO:0006402
* Copied GO:0000290 to GO:0000956 with type OBO_REL:is_a
* Changed name of GO:0000291 from "mRNA catabolic process, exonucleolytic" to "nuclear-transcribed mRNA catabolic process, exonucleolytic"
* Changed definition of GO:0000291 from "The chemical reactions and pathways resulting in the breakdown of the mRNA transcript body that occurs when the ends are not protected by the 5'-cap or the 3'-poly(A) tail." to "The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that occurs when the ends are not protected by the 5'-cap or the 3'-poly(A) tail."
* Removed GO:0000291 from category gosubset_prok
* Added synonym "nuclear mRNA catabolic process, exonucleolytic" to GO:0000291
* Changed synonym scope of GO:0000291 from "Related" to "Exact"
* Deleted GO:0000291 --OBO_REL:is_a--> GO:0006402
* Copied GO:0000291 to GO:0000956 with type OBO_REL:is_a
* Changed name of GO:0000294 from "mRNA catabolic process, endonucleolytic cleavage-dependent decay" to "nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay"
* Changed definition of GO:0000294 from "A minor mRNA degradation pathway that begins with an endonucleolytic cleavage to generate unprotected ends." to "A minor degradation pathway nuclear-transcribed mRNAs that begins with an endonucleolytic cleavage to generate unprotected ends."
* Removed GO:0000294 from category gosubset_prok
* Added synonym "nuclear mRNA catabolic process, endonucleolytic cleavage-dependent decay" to GO:0000294
* Changed synonym scope of GO:0000294 from "Related" to "Exact"
* Deleted GO:0000294 --OBO_REL:is_a--> GO:0006402
* Copied GO:0000294 to GO:0000956 with type OBO_REL:is_a
* Copied GO:0000465 to GO:0000967 with type OBO_REL:is_a
* Copied GO:0000472 to GO:0000967 with type OBO_REL:is_a
* Copied GO:0000477 to GO:0000967 with type OBO_REL:is_a
* Copied GO:0005351 to GO:0005402 with type OBO_REL:is_a
* Deleted GO:0005366 --OBO_REL:is_a--> GO:0005402
* Copied GO:0005366 to GO:0015295 with type OBO_REL:is_a
* Added synonym "sugar:cation symporter activity" to GO:0005402
* Changed synonym scope of GO:0005402 from "Related" to "Exact"
* Deleted GO:0005402 --OBO_REL:is_a--> GO:0005351
* Copied GO:0005402 to GO:0015294 with type OBO_REL:is_a
* Deleted GO:0006020 --OBO_REL:is_a--> GO:0019318
* Copied GO:0006020 to GO:0019751 with type OBO_REL:is_a
* Deleted GO:0006021 --OBO_REL:is_a--> GO:0019319
* Copied GO:0006021 to GO:0046173 with type OBO_REL:is_a
* Deleted GO:0006887 --part_of--> GO:0045045
* Copied GO:0006887 to GO:0032940 with type part_of
* Deleted GO:0006888 --part_of--> GO:0045045
* Deleted GO:0006890 --part_of--> GO:0045045
* Deleted GO:0006891 --part_of--> GO:0045045
* Deleted GO:0006892 --part_of--> GO:0045045
* Deleted GO:0006974 --OBO_REL:is_a--> GO:0009719
* Copied GO:0006974 to GO:0050896 with type OBO_REL:is_a
* Deleted GO:0009751 --OBO_REL:is_a--> GO:0009719
* Deleted GO:0019310 --OBO_REL:is_a--> GO:0019320
* Copied GO:0019310 to GO:0046174 with type OBO_REL:is_a
* Changed name of GO:0031086 from "mRNA catabolic process, deadenylation-independent decay" to "nuclear-transcribed mRNA catabolic process, deadenylation-independent decay"
* Changed definition of GO:0031086 from "A pathway of mRNA degradation that proceeds through a series of steps that is independent of deadenylation, but requires decapping followed by transcript decay, and that can regulate mRNA stability." to "A pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of steps that is independent of deadenylation, but requires decapping followed by transcript decay, and that can regulate mRNA stability."
* Added definition dbxref GOC:krc to GO:0031086
* Removed GO:0031086 from category gosubset_prok
* Added synonym "nuclear mRNA catabolic process, deadenylation-independent decay" to GO:0031086
* Changed synonym scope of GO:0031086 from "Related" to "Exact"
* Deleted GO:0031086 --OBO_REL:is_a--> GO:0006402
* Copied GO:0031086 to GO:0000956 with type OBO_REL:is_a
* Changed name of GO:0031087 from "deadenylation-independent decapping" to "deadenylation-independent decapping of nuclear-transcribed mRNA"
* Changed definition of GO:0031087 from "Cleavage of the 5'-cap of an mRNA that is independent of poly(A) tail shortening." to "Cleavage of the 5'-cap of a nuclear-transcribed mRNA that is independent of poly(A) tail shortening."
* Added definition dbxref GOC:krc to GO:0031087
* Added synonym "deadenylation-independent decapping of nuclear mRNA" to GO:0031087
* Changed name of GO:0033621 from "mRNA catabolic process, meiosis-specific transcripts" to "nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts"
* Removed GO:0033621 from category gosubset_prok
* Added synonym "nuclear mRNA catabolic process, meiosis-specific transcripts" to GO:0033621
* Changed synonym scope of GO:0033621 from "Related" to "Exact"
* Deleted GO:0033621 --OBO_REL:is_a--> GO:0006402
* Copied GO:0033621 to GO:0000956 with type OBO_REL:is_a
* Changed name of GO:0042779 from "removal of tRNA 3'-trailer sequence" to "tRNA 3'-end cleavage"
* Changed definition of GO:0042779 from "Endonucleolytic or exonucleolytic cleavage of the 3'-end of the pre-tRNA as part of the process of generating the mature 3'-end of the tRNA." to "Cleavage of the 3'-end of the pre-tRNA as part of the process of generating the mature 3'-end of the tRNA; may involve endonucleolytic or exonucleolytic cleavage, or both."
* Added synonym "removal of tRNA 3'-trailer sequence" to GO:0042779
* Changed synonym scope of GO:0042779 from "Related" to "Exact"
* Changed name of GO:0043145 from "snoRNA 3' end cleavage" to "snoRNA 3'-end cleavage"
* Added synonym "snoRNA 3' end cleavage" to GO:0043145
* Changed synonym scope of GO:0043145 from "Related" to "Exact"
* Added comment "This term was made obsolete because it artificially groups a number of other terms, leading to path problems, its definition is unclear (and lacks genus-differentia features), and it has probably been used incorrectly in annotations."
* Changed definition of GO:0045045 from "The pathway along which proteins and other substances are moved around and out of the cell. After synthesis on the ribosomes of the endoplasmic reticulum (ER), completed polypeptide chains are moved to the Golgi complex and subsequently sorted to various destinations. Proteins synthesized and sorted in the secretory pathway include not only those that are secreted from the cell but also enzymes and other resident proteins in the lumen of the ER, Golgi, and lysosomes as well as integral proteins in the membranes of these organelles and the plasma membrane." to "OBSOLETE. The pathway along which proteins and other substances are moved around and out of the cell. After synthesis on the ribosomes of the endoplasmic reticulum (ER), completed polypeptide chains are moved to the Golgi complex and subsequently sorted to various destinations. Proteins synthesized and sorted in the secretory pathway include not only those that are secreted from the cell but also enzymes and other resident proteins in the lumen of the ER, Golgi, and lysosomes as well as integral proteins in the membranes of these organelles and the plasma membrane."
* Deleted GO:0045045 --OBO_REL:is_a--> GO:0006810
* Deleted GO:0045045 --part_of--> GO:0032940
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 13afe05
* Deleted GO:0045047 --part_of--> GO:0045045
* Deleted GO:0045054 --OBO_REL:is_a--> GO:0045045
* Copied GO:0045054 to GO:0032940 with type OBO_REL:is_a
* Deleted GO:0045055 --OBO_REL:is_a--> GO:0045045
* Copied GO:0045055 to GO:0032940 with type OBO_REL:is_a
* Changed name of GO:0060211 from "regulation of poly(A) tail shortening" to "regulation of nuclear-transcribed mRNA poly(A) tail shortening"
* Changed definition of GO:0060211 from "Any process that modulates the frequency, rate or extent of poly(A) tail shortening. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length." to "Any process that modulates the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length."
* Added synonym "regulation of nuclear mRNA poly(A) tail shortening" to GO:0060211
* Changed name of GO:0060212 from "negative regulation of poly(A) tail shortening" to "negative regulation of nuclear-transcribed mRNA poly(A) tail shortening"
* Changed definition of GO:0060212 from "Any process that decreases the frequency, rate or extent of poly(A) tail shortening. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length." to "Any process that decreases the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length."
* Added synonym "negative regulation of nuclear mRNA poly(A) tail shortening" to GO:0060212
* Changed name of GO:0060213 from "positive regulation of poly(A) tail shortening" to "positive regulation of nuclear-transcribed mRNA poly(A) tail shortening"
* Changed definition of GO:0060213 from "Any process that increases the frequency, rate or extent of poly(A) tail shortening. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length." to "Any process that increases the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length."
* Added synonym "positive regulation of nuclear mRNA poly(A) tail shortening" to GO:0060213
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