[Go-diff] GO update 04/29/2008

Tue Apr 29 21:30:45 PDT 2008

OBODIFF of gene_ontology_write.obo version 1.44 by 1.46

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034419
* Created object of type obo:TERM with id GO:0034420
* Created object of type obo:TERM with id GO:0034421
* Created object of type obo:TERM with id GO:0034422
* Created object of type obo:TERM with id GO:0034423
* Populated new object GO:0034419 (macro)
  * Changed name of GO:0034419 from "<new term>" to "L-2-hydroxyglutarate oxidase activity"
  * Set definition of GO:0034419 to "Catalysis of the reaction: L-2-hydroxyglutarate + O2 = 2-oxoglutarate + H2O2."
  * Added definition dbxref PMID:18390652 to GO:0034419
  * Copied GO:0034419 to GO:0003973 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034419
* Populated new object GO:0034420 (macro)
  * Changed name of GO:0034420 from "<new term>" to "co-translational protein amino acid acetylation"
  * Set definition of GO:0034420 to "The addition of an acetyl group to one or more amino acids in a protein, occurring before the protein has been completely translated and released from the ribosome."
  * Added definition dbxref GOC:mah to GO:0034420
  * Added synonym "cotranslational protein amino acid acetylation" to GO:0034420
  * Changed synonym scope of GO:0034420 from "Related" to "Exact"
  * Copied GO:0034420 to GO:0043686 with type OBO_REL:is_a
  * Copied GO:0034420 to GO:0006473 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034420
* Populated new object GO:0034421 (macro)
  * Changed name of GO:0034421 from "<new term>" to "post-translational protein amino acid acetylation"
  * Set definition of GO:0034421 to "The addition of an acetyl group to one or more amino acids in a protein, occurring after the protein has been completely translated and released from the ribosome."
  * Added definition dbxref GOC:mah to GO:0034421
  * Added synonym "posttranslational protein amino acid acetylation" to GO:0034421
  * Changed synonym scope of GO:0034421 from "Related" to "Exact"
  * Copied GO:0034421 to GO:0006473 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034421
* Populated new object GO:0034422 (macro)
  * Changed name of GO:0034422 from "<new term>" to "aleurone grain lumen"
  * Set definition of GO:0034422 to "The volume enclosed by the membrane of an aleurone grain."
  * Added definition dbxref GOC:rph to GO:0034422
  * Copied GO:0034422 to GO:0033095 with type part_of
  * Copied GO:0034422 to GO:0060205 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034422
* Populated new object GO:0034423 (macro)
  * Changed name of GO:0034423 from "<new term>" to "autophagic vacuole lumen"
  * Set definition of GO:0034423 to "The volume enclosed within the autophagic vacuole membrane."
  * Added definition dbxref GOC:rph to GO:0034423
  * Copied GO:0034423 to GO:0005776 with type part_of
  * Copied GO:0034423 to GO:0005775 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034423
* Changed definition of GO:0000118 from "Complex that possesses histone deacetylase activity." to "A protein complex that possesses histone deacetylase activity."
* Deleted GO:0000118 --OBO_REL:is_a--> GO:0005667
* Copied GO:0000118 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0000118 to GO:0044451 with type OBO_REL:is_a
* Changed definition of GO:0000123 from "Complex that possesses histone acetyltransferase activity." to "A protein complex that possesses histone acetyltransferase activity."
* Deleted GO:0000123 --OBO_REL:is_a--> GO:0005667
* Copied GO:0000123 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0000123 to GO:0044451 with type OBO_REL:is_a
* Changed definition of GO:0000124 from "A large multiprotein complex that possesses histone acetyltransferase and in involved in regulation of transcription. The budding yeast complex includes Gcn5p, several proteins of the Spt and Ada families, and several TBP-associate proteins (TAFs); analogous complexes in other species have analogous compositions, and usually contain homologs of the yeast proteins." to "A large multiprotein complex that possesses histone acetyltransferase activity and is involved in regulation of transcription. The budding yeast complex includes Gcn5p, several proteins of the Spt and Ada families, and several TBP-associate proteins (TAFs); analogous complexes in other species have analogous compositions, and usually contain homologs of the yeast proteins."
* Changed name of GO:0004713 from "protein-tyrosine kinase activity" to "protein tyrosine kinase activity"
* Deleted synonym "protein tyrosine kinase activity" from GO:0004713
* Added synonym "protein-tyrosine kinase activity" to GO:0004713
* Changed synonym scope of GO:0004713 from "Related" to "Exact"
* Deleted GO:0004861 --OBO_REL:is_a--> GO:0004860
* Copied GO:0004861 to GO:0030291 with type OBO_REL:is_a
* Deleted GO:0004862 --OBO_REL:is_a--> GO:0004860
* Copied GO:0004862 to GO:0030291 with type OBO_REL:is_a
* Deleted GO:0008426 --OBO_REL:is_a--> GO:0004860
* Copied GO:0008426 to GO:0030291 with type OBO_REL:is_a
* Deleted GO:0010307 --OBO_REL:is_a--> GO:0030234
* Copied GO:0010307 to GO:0019207 with type OBO_REL:is_a
* Deleted GO:0016230 --OBO_REL:is_a--> GO:0008047
* Copied GO:0016230 to GO:0016004 with type OBO_REL:is_a
* Copied GO:0030293 to GO:0030547 with type OBO_REL:is_a
* Copied GO:0030297 to GO:0030546 with type OBO_REL:is_a
* Changed name of GO:0034414 from "tRNA 3'-end cleavage, endonucleolytic" to "tRNA 3'-trailer cleavage, endonucleolytic"
* Added synonym "endonucleolytic tRNA 3'-trailer cleavage" to GO:0034414
* Added synonym "tRNA 3'-end cleavage, endonucleolytic" to GO:0034414
* Changed synonym scope of GO:0034414 from "Related" to "Exact"
* Changed name of GO:0034415 from "tRNA 3'-end cleavage, exonucleolytic" to "tRNA 3'-trailer cleavage, exonucleolytic"
* Added synonym "exonucleolytic tRNA 3'-trailer cleavage" to GO:0034415
* Changed synonym scope of GO:0034415 from "Related" to "Exact"
* Added synonym "tRNA 3'-end cleavage, exonucleolytic" to GO:0034415
* Changed synonym scope of GO:0034415 from "Related" to "Exact"
* Changed name of GO:0042779 from "tRNA 3'-end cleavage" to "tRNA 3'-trailer cleavage"
* Added synonym "tRNA 3'-end cleavage" to GO:0042779
* Changed synonym scope of GO:0042779 from "Related" to "Exact"
* Deleted GO:0043027 --OBO_REL:is_a--> GO:0004857
* Copied GO:0043027 to GO:0004866 with type OBO_REL:is_a