[Go-diff] GO update 08/04/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.148 by 1.149

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034637
* Created object of type obo:TERM with id GO:0034638
* Populated new object GO:0034637 (macro)
  * Changed name of GO:0034637 from "<new term>" to "cellular carbohydrate biosynthetic process"
  * Set definition of GO:0034637 to "The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, carried out by individual cells."
  * Added definition dbxref GOC:mah to GO:0034637
  * Copied GO:0034637 to GO:0016051 with type OBO_REL:is_a
  * Copied GO:0034637 to GO:0044249 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034637
* Populated new object GO:0034638 (macro)
  * Changed name of GO:0034638 from "<new term>" to "phosphatidylcholine catabolic process"
  * Set definition of GO:0034638 to "The chemical reactions and pathways resulting in the breakdown of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline."
  * Added definition dbxref GOC:jp to GO:0034638
  * Added GO:0034638 to category gosubset_prok
  * Added synonym "phosphatidylcholine breakdown" to GO:0034638
  * Changed synonym scope of GO:0034638 from "Related" to "Exact"
  * Added synonym "phosphatidylcholine catabolism" to GO:0034638
  * Changed synonym scope of GO:0034638 from "Related" to "Exact"
  * Added synonym "phosphatidylcholine degradation" to GO:0034638
  * Changed synonym scope of GO:0034638 from "Related" to "Exact"
  * Copied GO:0034638 to GO:0046475 with type OBO_REL:is_a
  * Copied GO:0034638 to GO:0046470 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034638
* Deleted GO:0000747 --OBO_REL:is_a--> GO:0022413
* Copied GO:0000747 to GO:0022413 with type part_of
* Deleted GO:0006023 --OBO_REL:is_a--> GO:0016051
* Copied GO:0006023 to GO:0034637 with type OBO_REL:is_a
* Deleted GO:0006506 --OBO_REL:is_a--> GO:0044249
* Copied GO:0008202 to GO:0044249 with type OBO_REL:is_a
* Copied GO:0009313 to GO:0016052 with type OBO_REL:is_a
* Changed definition of GO:0009579 from "A membraneous cellular structure that bears the photosynthetic pigments in photosynthetic organisms. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation." to "A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation."
* Deleted GO:0016138 --OBO_REL:is_a--> GO:0016051
* Copied GO:0016138 to GO:0034637 with type OBO_REL:is_a
* Deleted GO:0019390 --OBO_REL:is_a--> GO:0016051
* Copied GO:0019390 to GO:0034637 with type OBO_REL:is_a
* Deleted GO:0019401 --OBO_REL:is_a--> GO:0016051
* Copied GO:0019401 to GO:0034637 with type OBO_REL:is_a
* Deleted GO:0030166 --OBO_REL:is_a--> GO:0016051
* Copied GO:0030166 to GO:0034637 with type OBO_REL:is_a
* Deleted GO:0033692 --OBO_REL:is_a--> GO:0044249
* Copied GO:0033692 to GO:0034637 with type OBO_REL:is_a
* Changed name of GO:0034628 from "CLONE OF de novo NAD biosynthetic process from tryptophan" to "de novo NAD biosynthetic process from aspartate"
* Changed definition of GO:0034628 from "The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide (NAD), beginning with the synthesis of tryptophan from simpler precursors; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH." to "The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide (NAD), beginning with the synthesis of aspartate from simpler precursors; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH."
* Deleted definition dbxref PMID:17161604 from GO:0034628
* Added definition dbxref GOC:imk to GO:0034628
* Deleted GO:0046175 --OBO_REL:is_a--> GO:0016051
* Copied GO:0046175 to GO:0034637 with type OBO_REL:is_a
* Deleted GO:0046349 --OBO_REL:is_a--> GO:0016051
* Copied GO:0046349 to GO:0034637 with type OBO_REL:is_a
* Deleted GO:0046351 --OBO_REL:is_a--> GO:0016051
* Copied GO:0046351 to GO:0034637 with type OBO_REL:is_a
* Deleted GO:0046364 --OBO_REL:is_a--> GO:0016051
* Copied GO:0046364 to GO:0034637 with type OBO_REL:is_a
* Copied GO:0046467 to GO:0044249 with type OBO_REL:is_a
* Deleted GO:0051479 --OBO_REL:is_a--> GO:0016051
* Copied GO:0051479 to GO:0034637 with type OBO_REL:is_a